BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G48000.1

Length=1709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902855 jgi|Araly1|902855|Al_scaffold_0004_3505                    667    0.0  


> Ahg902855 jgi|Araly1|902855|Al_scaffold_0004_3505
Length=972

 Score =  667 bits (361),  Expect = 0.0
 Identities = 530/607 (87%), Gaps = 29/607 (5%)
 Strand=Plus/Plus

Query  1    ATGA-AGAAGCGCATGTGGAGAATCTCACTGATTTCCCAGA--TATCTGATCTGCTCTGC  57
            |||| | |||||||| ||||||||||||||||||||||| |  | |||||||||||||||
Sbjct  1    ATGATAAAAGCGCATCTGGAGAATCTCACTGATTTCCCAAATTTCTCTGATCTGCTCTGC  60

Query  58   CTTTCCCGTGGCTCTTCTTCAACCTTGAAGACTCTGACCCCATTCTGCTTTACCCTCTCC  117
            ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct  61   CTTTCTCGTGGGTCTTCTTCAACCTTGAAGACTCTGACCCCCTTCTGCTTTACCCTCTTC  120

Query  118  AGGTCTCCCT-TCCACCAATCCGGGGGCGATGATGATGCTTCGGGATTGAAAAACCAATT  176
            |||||| ||| | ||||  |||     | |  ||   |||||||  ||||||| ||||||
Sbjct  121  AGGTCT-CCTATACACC-CTCC--CTTC-A-AAT-CCGCTTCGGCTTTGAAAACCCAATT  173

Query  177  GTTGCGCTTCCGTAATGATTCCGGTAAAGTTGCCTCCGTTTTGGAGAG-GA--ACAAAAT  233
            |||||||||| |||||||||||| |||||||||||| |||||||||||  |  || ||||
Sbjct  174  GTTGCGCTTCTGTAATGATTCCGATAAAGTTGCCTCTGTTTTGGAGAGTCACGACGAAAT  233

Query  234  CCAAGGAGCTGCGTTTGTTGAGCTCCTTAGGCAGTTACGTCCATGGCCCGTTTTGTCCCA  293
            |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  234  CCAAGGAGCTGCTTTTGTTGAGCTCCTTAGGCAGTTACGTCCTTGGCCCGTTTTGTCCCA  293

Query  294  ACTGGTGTTCGACTGGAGAAGAAACAAGGCACTATGCGATGGGTTGCCTATGACTGCTGA  353
            | |||| ||||||||||||||||||||||||||||||||| || ||    || |  |  |
Sbjct  294  AGTGGTCTTCGACTGGAGAAGAAACAAGGCACTATGCGAT-GG-TG----TG-C--C-CA  343

Query  354  TGAATACGCTAAGGGCATTACCATTTCTGGTAGACTGAAGAATGTCGATTTGGCCCTTTC  413
            ||| |  |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  344  TGACT--GCTAAGGGCATTACAATTTCTGGTAGACTGAAGAATGTCGATTTGGCGCTTTC  401

Query  414  CTTGTTTCACGAGTCTGCAAACAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA  473
            ||||||| |||||||  |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  402  CTTGTTTAACGAGTCCCCAAAGAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA  461

Query  474  CCTCTGCAACGGTTTGTCTCATCATTGCGAGCAGCTCTTCCTTGACTTCAATTCTCAACA  533
            | | |||||||||||| |  || ||||| ||||||||||||||||||||||| |||||||
Sbjct  462  CATGTGCAACGGTTTGGCAGATGATTGCAAGCAGCTCTTCCTTGACTTCAATGCTCAACA  521

Query  534  AGACGGACCCTCCTCTTCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA  593
            | | || | || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  522  ACAAGGGCACT-C-C-TCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA  578

Query  594  TGGCCGT  600
            |||||||
Sbjct  579  TGGCCGT  585


 Score =  566 bits (306),  Expect = 2e-160
 Identities = 334/348 (96%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  1056  AGACCAGGCTATTACAAAAGGACTCCAGATAGAGACAGATGGTATTATGAGATCAATAGT  1115
             ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct  591   AGACCAGGCTATTTCAAAAGGACTCCAGATAGAGACAGATGGTACTATGAGATCAATTGT  650

Query  1116  GGCTAGTTACTTCAGGTGCAATGCGGTTGATAAGCTTGCCAAATTCGTGCAGCGTGCAAA  1175
             |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct  651   GGCTAGTTACTTCAGGTGCAATGCGGCTGATAAGCTTGCCAAATTCATGCAGCGTGCAAA  710

Query  1176  CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC  1235
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711   CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC  770

Query  1236  TCAAAAGCGTTTTAAAGAGATGGAAAACGTCCTCTCTGAAATGGAAAGCTTTAAAATAAG  1295
             ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct  771   TCAAAAGCGTTTTAAAGAGATGGAAGACGTCCTCTCTGAAATGGAAAGCTTTAACATAAG  830

Query  1296  CCGGTCCAAGAAGACGCTTTGTATTCTGCTTAGAGTATACGCAGCAACGCATGGACAGGA  1355
             ||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||||
Sbjct  831   CCGGTCCAAGAAGACTCTTTGCATTCTGCATAGAGTATACGCAGCAGCGCATGGACAGGA  890

Query  1356  GCATAAGGTTAATCAAGTCGCAGGAATGATGTTAAAGCATGGACATGA  1403
              |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct  891   ACATAAGGTCAATCAAGTCGCAGGAATGATGTTAAAGAATGGACATGA  938



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 64105882335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5