BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G48000.1 Length=1709 Score E Sequences producing significant alignments: (Bits) Value Ahg902855 jgi|Araly1|902855|Al_scaffold_0004_3505 667 0.0 > Ahg902855 jgi|Araly1|902855|Al_scaffold_0004_3505 Length=972 Score = 667 bits (361), Expect = 0.0 Identities = 530/607 (87%), Gaps = 29/607 (5%) Strand=Plus/Plus Query 1 ATGA-AGAAGCGCATGTGGAGAATCTCACTGATTTCCCAGA--TATCTGATCTGCTCTGC 57 |||| | |||||||| ||||||||||||||||||||||| | | ||||||||||||||| Sbjct 1 ATGATAAAAGCGCATCTGGAGAATCTCACTGATTTCCCAAATTTCTCTGATCTGCTCTGC 60 Query 58 CTTTCCCGTGGCTCTTCTTCAACCTTGAAGACTCTGACCCCATTCTGCTTTACCCTCTCC 117 ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 61 CTTTCTCGTGGGTCTTCTTCAACCTTGAAGACTCTGACCCCCTTCTGCTTTACCCTCTTC 120 Query 118 AGGTCTCCCT-TCCACCAATCCGGGGGCGATGATGATGCTTCGGGATTGAAAAACCAATT 176 |||||| ||| | |||| ||| | | || ||||||| ||||||| |||||| Sbjct 121 AGGTCT-CCTATACACC-CTCC--CTTC-A-AAT-CCGCTTCGGCTTTGAAAACCCAATT 173 Query 177 GTTGCGCTTCCGTAATGATTCCGGTAAAGTTGCCTCCGTTTTGGAGAG-GA--ACAAAAT 233 |||||||||| |||||||||||| |||||||||||| ||||||||||| | || |||| Sbjct 174 GTTGCGCTTCTGTAATGATTCCGATAAAGTTGCCTCTGTTTTGGAGAGTCACGACGAAAT 233 Query 234 CCAAGGAGCTGCGTTTGTTGAGCTCCTTAGGCAGTTACGTCCATGGCCCGTTTTGTCCCA 293 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 234 CCAAGGAGCTGCTTTTGTTGAGCTCCTTAGGCAGTTACGTCCTTGGCCCGTTTTGTCCCA 293 Query 294 ACTGGTGTTCGACTGGAGAAGAAACAAGGCACTATGCGATGGGTTGCCTATGACTGCTGA 353 | |||| ||||||||||||||||||||||||||||||||| || || || | | | Sbjct 294 AGTGGTCTTCGACTGGAGAAGAAACAAGGCACTATGCGAT-GG-TG----TG-C--C-CA 343 Query 354 TGAATACGCTAAGGGCATTACCATTTCTGGTAGACTGAAGAATGTCGATTTGGCCCTTTC 413 ||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 344 TGACT--GCTAAGGGCATTACAATTTCTGGTAGACTGAAGAATGTCGATTTGGCGCTTTC 401 Query 414 CTTGTTTCACGAGTCTGCAAACAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA 473 ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 402 CTTGTTTAACGAGTCCCCAAAGAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA 461 Query 474 CCTCTGCAACGGTTTGTCTCATCATTGCGAGCAGCTCTTCCTTGACTTCAATTCTCAACA 533 | | |||||||||||| | || ||||| ||||||||||||||||||||||| ||||||| Sbjct 462 CATGTGCAACGGTTTGGCAGATGATTGCAAGCAGCTCTTCCTTGACTTCAATGCTCAACA 521 Query 534 AGACGGACCCTCCTCTTCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA 593 | | || | || | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 ACAAGGGCACT-C-C-TCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA 578 Query 594 TGGCCGT 600 ||||||| Sbjct 579 TGGCCGT 585 Score = 566 bits (306), Expect = 2e-160 Identities = 334/348 (96%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 1056 AGACCAGGCTATTACAAAAGGACTCCAGATAGAGACAGATGGTATTATGAGATCAATAGT 1115 ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || Sbjct 591 AGACCAGGCTATTTCAAAAGGACTCCAGATAGAGACAGATGGTACTATGAGATCAATTGT 650 Query 1116 GGCTAGTTACTTCAGGTGCAATGCGGTTGATAAGCTTGCCAAATTCGTGCAGCGTGCAAA 1175 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 651 GGCTAGTTACTTCAGGTGCAATGCGGCTGATAAGCTTGCCAAATTCATGCAGCGTGCAAA 710 Query 1176 CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC 1235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC 770 Query 1236 TCAAAAGCGTTTTAAAGAGATGGAAAACGTCCTCTCTGAAATGGAAAGCTTTAAAATAAG 1295 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 771 TCAAAAGCGTTTTAAAGAGATGGAAGACGTCCTCTCTGAAATGGAAAGCTTTAACATAAG 830 Query 1296 CCGGTCCAAGAAGACGCTTTGTATTCTGCTTAGAGTATACGCAGCAACGCATGGACAGGA 1355 ||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||| Sbjct 831 CCGGTCCAAGAAGACTCTTTGCATTCTGCATAGAGTATACGCAGCAGCGCATGGACAGGA 890 Query 1356 GCATAAGGTTAATCAAGTCGCAGGAATGATGTTAAAGCATGGACATGA 1403 |||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 891 ACATAAGGTCAATCAAGTCGCAGGAATGATGTTAAAGAATGGACATGA 938 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64105882335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5