BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G48010.1 Length=2115 Score E Sequences producing significant alignments: (Bits) Value Ahg935792 jgi|Araly1|935792|scaffold_403780.1 2894 0.0 Ahg910879 jgi|Araly1|910879|Al_scaffold_0001_1133 52.8 1e-05 > Ahg935792 jgi|Araly1|935792|scaffold_403780.1 Length=1883 Score = 2894 bits (1567), Expect = 0.0 Identities = 1781/1883 (95%), Gaps = 20/1883 (1%) Strand=Plus/Plus Query 84 ATTAGATGTTGTTTCTCCGTCGAATCGCCGTCGTCTTCTTTGTCTTCACCTCTTTCTCCG 143 |||||||| ||||||||||| |||||||||||||| || || |||||||||||||||||| Sbjct 17 ATTAGATGCTGTTTCTCCGTGGAATCGCCGTCGTCCTCATTCTCTTCACCTCTTTCTCCG 76 Query 144 CCGCTCAGAACTCCACGTGTCCTCTGGACTTTTCCGTCCTTGAACCGTTCCGGCGTCCGA 203 |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 77 CCGCTCAGAACTCCACGTGTCCTCTGGACTTTTCCGTCCTCCAACCTTTCCGGCGTCCGA 136 Query 204 AACCCGATGGCGCCACCACCTGCCAGTACCTCCTCCAAGGGCTACGCCTCCTCTACTCTC 263 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 137 AACCCGATGGCGCCACCACCTGCCAGTACCTCCTCCAAGGGCTACGCCTCCTTTACTCTC 196 Query 264 ACCATCTCCGTCAGACGGGTTCCTTTCTCCCGCCACCTGAGTCTGCTGCTTCTTGCTGGG 323 |||||||||||||||||||||||||||||||||||||||| |||||| | || ||||||| Sbjct 197 ACCATCTCCGTCAGACGGGTTCCTTTCTCCCGCCACCTGACTCTGCTCCCTCCTGCTGGG 256 Query 324 CTGCTCTCCAGTCTTCCGTCGCCGGTTTCCTCCCTCGCTTTGACGTCCGATCCACCTGCG 383 ||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||| | Sbjct 257 CTGCTCTCCAGTCTTCCATCGCCGGATTCCTCCCTCGCTTCGACGTCCGGTCCACCTGTG 316 Query 384 GTTTCCAGACGCCGTGGATTTCGCAGGGGTGCATGGACATCACCACCAGGTCTCAATTCG 443 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 317 GTTTCCAGACGCCGTGGATTTCGCAGGGGTGCATGAACATCACCACCAGGTCTCAATTCG 376 Query 444 AATCCCTTATCCCTAACTCCTCCCTCGCCACCACCGCCATGCGCTGTAACACCTCTCTCG 503 ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 377 AATCCCTAATCCCTAATTCCTCCCTCACCACCACCGCCATGCGCTGTAACACCTCTCTCG 436 Query 504 AGAGCAATACCCCTTGCGCCTCCTGCACTCAGAGCCTCTCCGCGTTTCAGCCCTATCTCT 563 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 437 AGAGCAACACCCCTTGCGCCTCCTGCACTCAGAGCCTCTCCGCGTTTCAGCCCTTTCTCA 496 Query 564 CCGGTCCATCCCTCGGTAATGTCTCCGACTGTGCTTCTTTTCCCTCTATCTACGCCGCTG 623 |||| || |||||||| || |||||| |||||| ||||||||||||| |||||||||||| Sbjct 497 CCGGACCTTCCCTCGGCAACGTCTCCAACTGTGATTCTTTTCCCTCTGTCTACGCCGCTG 556 Query 624 CTTTCGCCAATTCCTTGGGCCCCACCGACAAAGGCACCGCCAAATGCTTGTTTCAGCTCG 683 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 557 CTTTCGCCAATTCCTACGGTCCCACCGACAAAGGCACCGCCAAATGCTTGTTTCAGCTCG 616 Query 684 ATTTGGCTTCTCCCACTAGCTCCGG---T-GCTAACAAAGTCAAAGTTCTAGTTTCTTCT 739 ||||||||||| | |||||||||| | || ||| | ||||| |||| | | |||| Sbjct 617 ATTTGGCTTCT--C-CTAGCTCCGGTAATGGCAAACTCA-TCAAAATTCT--TGT-TTCT 669 Query 740 TTCTCTGTTTTGCTCGTCGCCTCTGTTCTGGTTATCACCGCTTGGTTCTGGTACTGCCGG 799 || ||||| |||||||| ||||||| |||||||| ||||||||| ||||||||||||||| Sbjct 670 TTATCTGTCTTGCTCGTTGCCTCTGCTCTGGTTACCACCGCTTGCTTCTGGTACTGCCGG 729 Query 800 AGGAAGAAAAGCAAGCTTCTCAAGCCTCGGGATACTAGTTTAGAAGCTGGCACGCAGTCT 859 ||| | ||||| || ||||||||||||||| |||||||||||||||||||| ||| Sbjct 730 AGG-A-AAAAG-AA------CAAGCCTCGGGATACCAGTTTAGAAGCTGGCACGCAATCT 780 Query 860 AGACTTGATTCCATGAGCGAGAGCACCACTCTTGTCAAATTCAGCTTCGACGAGATCAAG 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGACTTGATTCCATGAGCGAGAGCACCACTCTTGTCAAATTCAGCTTCGACGAGATCAAG 840 Query 920 AAAGCCACCAACAATTTCTCACGCCACAACATCATTGGCCGGGGAGGTTACGGGAACGTC 979 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 841 AAAGCCACCAACAATTTCTCGCGCCACAACATCATTGGCAGGGGAGGTTACGGGAACGTC 900 Query 980 TTCAAGGGCGCCCTGCCCGACGGCACCCAGGTTGCCTTCAAGAGGTTCAAGAACTGTTCT 1039 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TTCAAGGGCGTCTTGCCCGACGGCACCCAGGTTGCCTTCAAGAGGTTCAAGAACTGTTCT 960 Query 1040 GCTGGAGGGGACGCCAACTTCGCTCATGAGGTCGAGGTCATCGCCAGCATCCGCCACGTC 1099 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GCTGGAGGGGACGCCAACTTCGCTCATGAGGTCGAGGTCATCGCCAGCATCCGCCACGTC 1020 Query 1100 AATCTCCTTGCCCTCAGAGGCTACTGTACTGCAACCACGCCCTATGAAGGTCACCAGAGG 1159 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1021 AATCTCCTTGCCCTCAGAGGCTACTGTACAGCAACCACGCCCTATGAAGGTCACCAGAGG 1080 Query 1160 ATCATTGTCTGTGATCTTGTCAGTAACGGTAGCCTTCATGACCATCTCTTTGGCGACTTG 1219 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1081 ATCATAGTCTGTGATCTTGTCAGCAACGGTAGCCTTCATGACCATCTCTTTGGAGACTTG 1140 Query 1220 GAGGCTCAGCTTGCCTGGCCTCTTAGGCAGAGGATCGCCCTTGGCATGGCCAGAGGACTG 1279 |||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 1141 GAGGCTCAGCTTCCCTGGCCTCTCAGGCAGAGGATCGCACTTGGCATGGCCAGAGGGCTG 1200 Query 1280 GCTTATCTACACTACGGCGCACAACCCTCCATCATCCACAGGGATATCAAGGCCAGCAAC 1339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GCTTATCTACACTACGGCGCACAACCCTCCATCATCCACAGGGATATCAAGGCCAGCAAC 1260 Query 1340 ATTCTCTTGGACGAGAGGTTTGAGGCCAAGGTTGCGGATTTCGGGCTGGCCAAGTTCAAC 1399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 ATTCTCTTGGACGAGAGGTTTGAGGCCAAGGTTGCGGATTTCGGGCTGGCCAAGTTCAAC 1320 Query 1400 CCCGAAGGAATGACTCATATGAGCACGCGGGTCGCAGGCACTATGGGATACGTTGCTCCA 1459 |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct 1321 CCCGAAGGAATGACGCATATGAGCACGCGGGTCGCAGGCACAATGGGGTACGTGGCTCCA 1380 Query 1460 GAGTACGCACTGTACGGGCAACTGACTGAGAAAAGCGACGTGTACAGCTTTGGGGTGGTG 1519 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1381 GAGTACGCACTGTACGGGAAACTGACTGAGAAAAGCGACGTCTACAGCTTTGGGGTGGTG 1440 Query 1520 CTTCTAGAGCTTCTGAGCAGGAGAAAGGCGATTGTGACAGACGAGGAGGGGCAGCCTGTG 1579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 CTTCTAGAGCTTCTGAGCAGGAGAAAGGCGATTGTGACAGACGAGGAGGGGCAGCCTGTG 1500 Query 1580 TCGGTGGCAGACTGGGCGTGGTCGCTGGTAAGAGAAGGCCAGACATTGGATGTGGTGGAA 1639 ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| Sbjct 1501 TCGGTGGCAGACTGGGCGTGGTCGCTGGTGAGGGAAGGCCAGACACTGGATGTGGTGGAG 1560 Query 1640 GACGGGATGCCAGAGAAGGGACCCCCAGAGGTTCTGGAGAAGTATGTGCTGATAGCAGTG 1699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1561 GACGGGATGCCAGAGAAGGGACCCCCAGAGGTTCTGGAGAAGTATGTGCTGATAGCAGTG 1620 Query 1700 CTGTGCTCTCACCCTCAGCTCCACGCAAGGCCAACAATGGATCAAGTGGTGAAAATGCTG 1759 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 CTGTGCTCCCACCCTCAGCTCCACGCAAGGCCAACAATGGATCAAGTGGTGAAAATGCTG 1680 Query 1760 GAGAGCAATGAGTTCACTGTTATAGCCATACCTCAACGGCCAATCCCTCTGGTGGCTTGT 1819 ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1681 GAGAGTAATGAGTTCACTGTTATATCCATACCTCAACGCCCAATCCCTCTGGTGGCTTGT 1740 Query 1820 AGGGAAGAGATTGACCGCTCTGTTAGTAGCAGCAGTGGCTCAGGGAAGCTCACTAGCCCC 1879 ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 1741 AGGGAAGAGATTGACCGCTCTGTTAGTAGCAGCAGCGGCTCCGGAAAGCTCACTAGCCCC 1800 Query 1880 ACGGGATATCAGGCCTTCTCATTCGGAGGTGATGGCCCCTCAGGGAACACGAATACCACT 1939 |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 1801 ACGGGATATCAGGCCTTCTCCTTCGGAGGTGATGGACCCTCAGGGAACACAAATACCACT 1860 Query 1940 TAGATGAGATATGTATGTTGTAG 1962 ||| ||||| ||||||||||||| Sbjct 1861 TAGCTGAGAGATGTATGTTGTAG 1883 > Ahg910879 jgi|Araly1|910879|Al_scaffold_0001_1133 Length=2469 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1328 AAGGCCAGCAACATTCTCTTGGACGAGA 1355 |||||||||||||||||||||||||||| Sbjct 1897 AAGGCCAGCAACATTCTCTTGGACGAGA 1924 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79570521805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5