BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G48020.2 Length=1751 Score E Sequences producing significant alignments: (Bits) Value Ahg483991 jgi|Araly1|483991|fgenesh2_kg.4__3051__AT2G48020.1 2549 0.0 Ahg488771 jgi|Araly1|488771|fgenesh2_kg.6__1905__AT5G18840.1 117 3e-25 > Ahg483991 jgi|Araly1|483991|fgenesh2_kg.4__3051__AT2G48020.1 Length=1739 Score = 2549 bits (1380), Expect = 0.0 Identities = 1547/1623 (95%), Gaps = 29/1623 (2%) Strand=Plus/Plus Query 121 AGGCTTCGTCTCTTTTGCAATTTTTGAGTTAGCCAAGTGCTCAAGGGAGATACATAATAC 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 128 AGGCTTCGTCTCTTTTGCAA-TTTTGAGTTAGCCAAGTGCTCAAGGGAGATACATAATAC 186 Query 181 CTGAAGATGTCCAAGGC---AAGTGATGCCGTCAGAGAACCATTGGTGGACAAGAATATG 237 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 187 CTGAAGATGTCAAAGGCAAAAAGTGATGCCGTCAGAGAACCATTGGTGGACAAGAATATG 246 Query 238 GCTGGATCAAAACCAGACCAGCCGTGGATGGTTTATCTCAGCACATTCGTTGCGGTCTGT 297 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 247 GCTGGATCAAAACCAGACCAGCCGTGGATGGTTTATCTCAGCACATTTGTTGCGGTCTGT 306 Query 298 GGTTCTTTTGCGTTCGGTTCTTGTGCGGGATACTCTTCACCTGCTCAGGCTGCAATTAGG 357 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 GGTTCTTTTGCGTTTGGTTCTTGTGCGGGATACTCTTCACCTGCTCAGGCTGCAATTAGG 366 Query 358 AATGACCTTTCATTGACTATAGCTGAGTTTTCACTCTTTGGTTCTTTACTAACTTTTGGC 417 |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 367 AATGACCTTTCACTGACTATAGCTGAGTTTTCACTCTTTGGCTCTTTGCTAACTTTTGGC 426 Query 418 GCAATGATCGGTGCTATAACAAGCGGGCCTATAGCTGATTTAGTTGGAAGAAAGGGGGCG 477 |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 427 GCAATGATTGGCGCTATAACAAGCGGGCCTATAGCTGATTTGGTTGGAAGAAAGGGGGCG 486 Query 478 ATGAGAGTTTCCTCTGCATTTTGTGTAGTCGGGTGGCTAGCAATCATCTTTGCCAAGGGA 537 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 487 ATGAGAGTTTCCTCTGCATTTTGTGTAGTCGGGTGGCTAGCAATCTTCTTTGCCAAGGGA 546 Query 538 GTAGTGGCTCTGGACCTTGGAAGACTGGCAACGGGATATGGAATGGGAGCATTTTCCTAT 597 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 547 GTAGTGGCTCTGGACCTCGGAAGACTGGCAACGGGATATGGAATGGGAGCATTCTCCTAT 606 Query 598 GTGGTGCCAATCTTTATAGCAGAAATTGCACCTAAAACTTTCAGAGGGGCTCTAACCACA 657 ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 607 GTGGTACCAATCTTTATAGCCGAAATTGCACCTAAAACTTTCCGAGGGGCTCTAACCACA 666 Query 658 CTGAACCAGATTCTGATCTGCACTGGAGTGTCGGTTTCCTTCATCATAGGCACACTAGTG 717 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 CTGAACCAGATTTTGATCTGCACTGGAGTGTCGGTTTCCTTCATCATAGGCACACTAGTG 726 Query 718 ACGTGGAGAGTCTTGGCATTAATAGGAATCATCCCATGCGCTGCCTCCTTCCTTGGCCTC 777 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 727 ACGTGGAGAGTCTTAGCATTGATAGGAATCATCCCATGCGCTGCCTCCTTTCTTGGCCTC 786 Query 778 TTTTTTATCCCTGAGTCTCCAAGATGGCTGGCAAAAG-TGGGGCGTGATACGGAGTTTGA 836 ||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||| Sbjct 787 TTTTTTATCCCTGAGTCTCCAAGATGGTTGGC-AAAGATGGGGCGTGATTCGGAGTTTGA 845 Query 837 AGCTGCACTGAGGAAGCTCCGTGGGAAGAAGGCTGATATTTCGGAGGAGGCAGCAGAGAT 896 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 846 AGCTTCACTGAGGAAGCTCCGTGGGAAGAAGGCTGATATTTCGCAGGAGGCAGCAGAGAT 905 Query 897 CCAGGATTATATCGAAACTCTGGAAAGGCTACCGAAAGCCAAGATGCTGGATTTGTTTCA 956 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 906 TCAGGATTATATCGAAACTCTGGAAAGGCTACCGAAAGCCAAGATGCTGGATTTGTTTCA 965 Query 957 GAGGAGATACATACGCTCTGTTCTTATAGCTTTCGGGTTGATGGTGTTTCAGCAGTTTGG 1016 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 966 GAGGAGATACATACGCTCTGTTCTTATAGCTTTTGGGTTGATGGTGTTTCAGCAGTTTGG 1025 Query 1017 AGGAATCAACGGAATATGTTTCTACACAAGCTCGATATTTGAGCAAGCAGGTTTTCCCAC 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1026 AGGAATCAACGGAATATGTTTCTACACAAGCTCGATATTTGAGCAAGCAGGTTTTCCCAC 1085 Query 1077 AAGACTTGGGATGATAATATATGCTGTTCTTCAGGTGGTAATCACTGCGCTTAATGCACC 1136 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1086 AAGACTTGGGATGATAATATACGCTGTTCTTCAGGTGGTAATCACTGCGCTTAATGCACC 1145 Query 1137 GATAGTTGACAGAGCCGGAAGAAAACCATTGCTACTGGTTTCTGCAACAGGGTTAGTGAT 1196 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1146 GATAGTTGACAGAGCCGGAAGAAAACCGTTGCTACTGGTTTCTGCAACAGGGTTAGTGAT 1205 Query 1197 AGGCTGTTTGATAGCAGCGGTTTCTTTCTATCTCAAGGTTCACGACATGGCGCACGAAGC 1256 ||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| Sbjct 1206 AGGCTGTTTGATAGCAGCGGTCTCTTTCTATCTCAAGGTTCACGACATGGCACGCGAAGC 1265 Query 1257 AGTCCCAGTCCTGGCTGTTGTTGGTATAATGGTGTACATAGGATCGTTTTCAGCAGGAAT 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1266 AGTCCCAGTCCTGGCTGTTGTTGGTATAATGGTGTACATAGGATCGTTTTCAGCAGGAAT 1325 Query 1317 GGGAGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACATAAAAGGAGTAGC 1376 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1326 GGGGGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACATAAAAGGAGTAGC 1385 Query 1377 AGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACACTTTCAA 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1386 AGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACACTTTCAA 1445 Query 1437 CTTCCTCATGTCCTGGAGCTCTTACGGAACTTTCCTCATTTACGCTGCCATCAACGCGCT 1496 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1446 CTTCTTCATGTCCTGGAGCTCTTACGGTACTTTCCTCATTTACGCTGCCATCAACGCGCT 1505 Query 1497 GGCCATTGTCTTCGTCATTGCCATCGTGCCTGAGACAAAAGGGAAGACATTGGAGCAGAT 1556 ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 1506 GGCCATTGTCTTCGTCATTGCCATCGTACCTGAAACGAAAGGGAAGACATTGGAGCAGAT 1565 Query 1557 CCAAGCTATAGTCAATCCATAGCTCAAACAC-T-T--------CCTAGATGTT-CGTTTC 1605 |||||| ||||||||||||||||||||||| | | |||||||||| ||| || Sbjct 1566 CCAAGCCGTAGTCAATCCATAGCTCAAACACATGTTATTATTTCCTAGATGTTTCGTGTC 1625 Query 1606 TATTAGCCAGCT-GGGACATAAATT-GCAATCTTGGATCTCTTTGCTTTTATGATTCTTT 1663 |||| | | || ||||||| || | ||||||||| ||||||||||||||| |||||||| Sbjct 1626 TATT--C-A-CTTGGGACATTAAGTAGCAATCTTGAATCTCTTTGCTTTTAAGATTCTTT 1681 Query 1664 ACT-GAGTTCAATTGTTATCACTCTCTCTATTTCTAATCTCTTCTTAATGAACTTTGGAC 1722 ||| | | | ||||||||| |||||||||||||||| |||||||| ||| |||||||| Sbjct 1682 ACTTG-G---A-TTGTTATCAATCTCTCTATTTCTAATGTCTTCTTATTGAGCTTTGGAC 1736 Query 1723 TTC 1725 ||| Sbjct 1737 TTC 1739 > Ahg488771 jgi|Araly1|488771|fgenesh2_kg.6__1905__AT5G18840.1 Length=1653 Score = 117 bits (63), Expect = 3e-25 Identities = 120/148 (81%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 1312 GGAATGGGAGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACA-TAAAAGG 1370 ||||||||| | | || |||||| | ||||||||||||||||| ||||||| ||| || Sbjct 1239 GGAATGGGACCTGTTCCTTGGGTGATAATGTCTGAGATATTTCCGATAAACATTAAGGGG 1298 Query 1371 AGTAGCAGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACAC 1430 | | |||||| || | | | || ||||| |||| || || ||||||||||||||||| Sbjct 1299 A-TCGCAGGAAGCTTAGTGGTACTAGTGAATTGGTCCGGTGCTTGGGCTGTTTCTTACAC 1357 Query 1431 TTTCAACTTCCTCATGTCCTGGAGCTCT 1458 |||||||||||||||| |||||||||| Sbjct 1358 TTTCAACTTCCTCATGAGCTGGAGCTCT 1385 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65705672625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5