BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G48030.1 Length=1788 Score E Sequences producing significant alignments: (Bits) Value Ahg322443 jgi|Araly1|322443|fgenesh1_pm.C_scaffold_4002500 1917 0.0 > Ahg322443 jgi|Araly1|322443|fgenesh1_pm.C_scaffold_4002500 Length=1335 Score = 1917 bits (1038), Expect = 0.0 Identities = 1255/1351 (93%), Gaps = 50/1351 (4%) Strand=Plus/Plus Query 161 ATGTTGAACCTCATTGCTTTCCTCCGCCGTCGTCTCCGCCGTCCCCGGAAAGCCAGAATC 220 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGTTGAACCTCATTGCTTTCCTCCGCCGTCGTCTCCGCCGCCCCCGGAAAGCCAGAATC 60 Query 221 TCCGTCAACCACCACCACCTCTCAGTTGATTCTTCTCCTGAGACTCATCATCATCA--A- 277 |||||| | ||||||||| ||||| |||| ||||||| ||||||||||||||||| | Sbjct 61 TCCGTC-A--ACCACCACCGCTCAGGTGATACTTCTCCGGAGACTCATCATCATCATCAG 117 Query 278 AATGG---C--T---TTT-CATCGGCAGCCGCCATCCACCCAAACCCGGACAAAACCATC 328 | ||| | | ||| ||||||||||||| || |||||||||||||| ||||||||| Sbjct 118 AGTGGTACCAATGGGTTTCCATCGGCAGCCGCTATTCACCCAAACCCGGAGAAAACCATC 177 Query 329 ACAGTGGCCACCTTTAACGCTGCTATGTTCTCCATGGCTCCCGCCGTCCCTAGCAACAAG 388 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 178 ACAGTGGCCACCTTTAACGCTGCTATGTTCTCCATGGCTCCCGCCGTCCCAAACAACAAG 237 Query 389 GGCTTGCCATTCCGGTCCAAGTCTACGGTTGACCGCCCCAAGAGCATTCTCAAGCCCATG 448 || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 238 GGTTTGCCATTCCGGTCCAAGTCAACCGTTGACCGCCCCAAGAGCATTCTCAAGCCCATG 297 Query 449 AACGCCGCCG-CATCTCCTACTCACGACTCTAGAAAGCAACAGAGGTTTGCCAAATCCAG 507 |||||||||| || |||||||||| ||||| ||||| ||| |||||||||||||||| || Sbjct 298 AACGCCGCCGCCA-CTCCTACTCATGACTCCAGAAAACAAGAGAGGTTTGCCAAATCAAG 356 Query 508 GCCTAGGAGAGTCTCCATCAATCTCCCCGACAACGAGATCAGCCGCCAGCTCAGCTTCCG 567 ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GCCTA-G-G-GTCTCCATCAATCTCCCCGACAACGAGATCAGCCGCCAGCTCAGCTTCCG 413 Query 568 GGAGGATCCACAGCACTCTCCCCTCA-G---G----------C-CCGGCGAGATCGGTCT 612 ||||||||||||||||||||| |||| | | | |||||||| ||||||| Sbjct 414 GGAGGATCCACAGCACTCTCCTCTCAGGCCTGCTCTCTCTTTCTCCGGCGAGGTCGGTCT 473 Query 613 CCGGAGCACCAGAACGGCTCTGGAAGTGCTGAGTGAGCTAGACGCAGACGTGCTGGCTCT 672 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 474 CCGGAGCACCAGAACGGCTCTGGAAGTGCTGAGGGAGCTAGACGCAGACGTGCTGGCTCT 533 Query 673 TCAAGACGTCAAGGCGGACGAGGCTGACCAAATGAGACCGCTCTCCGATCTCGCTGCGGC 732 |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || || Sbjct 534 GCAAGACGTCAAGGCTGACGAGGCTGACCAAATGCGACCGCTCTCCGATCTCGCCGCCGC 593 Query 733 GCTGGGGATGAATTACGTCTTCGCCGAGAGCTGGGCGCCGGAGTACGGCAACGCCATTCT 792 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 594 GCTGGGGATGAATTACGTCTTCGCTGAGAGCTGGGCGCCGGAGTACGGCAACGCCATTCT 653 Query 793 CTCTAAGTGGCCCATCAAAAGCTCCAATGTTCTAAGAATCTTCGACCACACTGATTTCAG 852 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 654 CTCTAAGTGGCCCATCAAAAGCTCCGATGTTCTAAGAATCTTCGACGACACTGATTTCAG 713 Query 853 GAACGTGTTGAAGGCGAGCATAGAGGTTCCCGGGAGCGGGGAAGTGGAGTTTCACTGCAC 912 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 714 GAACGTGTTGAAGGCGAGCATAGAGGTTCCGGGGAGCGGGGAAGTGGAGTTTCACTGCAC 773 Query 913 TCATCTGGATCACTTGGACGAGAAGTGGAGAATGAAGCAAGTCGATGCCATTATCCAATC 972 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 774 TCATCTTGATCACTTGGACGAGAAGTGGAGAATGAAGCAAGTCGATGCCATTATCCGATC 833 Query 973 CACCAACGTACCGCACATACTCGCTGGTGCTCTCAATTCTCTCGACGAATCCGATTATTC 1032 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CACCAACGTACCCCACATTCTCGCTGGTGCTCTCAATTCTCTCGACGAATCCGATTATTC 893 Query 1033 TCCTGAGAGATGGACCGACATCGTCAAGTATTACGAAGAGATGGGTAAGCCAATACCAAA 1092 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 894 TCCTGAGAGATGGACCGACATCGTCAAGTATTACGAAGAGATGGGTAAGCCGATACCAAA 953 Query 1093 AGCACAAGTGATGAGATTCTTAAAGAGCAAAGAATACACTGACGCTAAGGACTTTGCTGG 1152 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 954 AGCACAAGTGATGAGATTCTTAAAGAGCAAAGAATACACTGACGCTAAGGACTATGCTGG 1013 Query 1153 AGAATGCGAATCTGTGGTTGTTGTCGCCAAAGGCCAAAGTGTGCAGGGGACATGCAAGTA 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 AGAATGCGAATCTGTGGTTGTTGTCGCCAAAGGCCAAAGTGTGCAGGGGACATGCAAGTA 1073 Query 1213 CGGGACACGCGTGGACTACATACTTGCTTCCTCCGATTCACCGTACCGGTTCGTGCCAGG 1272 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1074 CGGGACACGCGTGGACTACATACTGGCTTCCTCGGATTCACCGTACCGGTTCGTGCCAGG 1133 Query 1273 GTCGTATTCCGTGTTGTCTTCCAAAGGAACCTCGGACCATCACATAGTCAAAGTCGATGT 1332 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1134 GTCGTATTCGGTGTTGTCTTCCAAAGGGACCTCGGACCATCACATAGTCAAAGTCGATGT 1193 Query 1333 TGTAAAAGCTACATCGATCAACGTCAACGAGCAGGAGCAGCGACCGATAAGATCACATAA 1392 ||||||||||| | ||||||||||| || | | ||||||||||||||||| |||| | Sbjct 1194 TGTAAAAGCTAGAGCGATCAACGTC---GA-C-G-AGCAGCGACCGATAAGA-CACA-A- 1244 Query 1393 GCTGCAGAGAATTAC---AGCGAC---TACGTATAATAATAACTCGTCTCTCACAAAGGC 1446 |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1245 GCTGCAGAGAGTTACTGCAGCGACGACTACGTATAATAATAACTCGTCTCTCACAAAGGC 1304 Query 1447 CTCGTGGAGGACACACTACTATAAAGCATGA 1477 ||||||||||||||| ||||||||||| ||| Sbjct 1305 CTCGTGGAGGACACATTACTATAAAGCGTGA 1335 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67115011690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5