BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G48150.1 Length=734 Score E Sequences producing significant alignments: (Bits) Value Ahg484007 jgi|Araly1|484007|fgenesh2_kg.4__3067__AT2G48150.1 1103 0.0 Ahg324733 jgi|Araly1|324733|fgenesh1_pm.C_scaffold_5002277 394 5e-109 > Ahg484007 jgi|Araly1|484007|fgenesh2_kg.4__3067__AT2G48150.1 Length=681 Score = 1103 bits (597), Expect = 0.0 Identities = 644/666 (97%), Gaps = 6/666 (1%) Strand=Plus/Plus Query 71 AGAGATGGGTGCTTCTGCTTCGGTTCCCGAGAGATCCGTCCATCAATTCACTGTAAAGGA 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 AGAGATGGGTGCTTCTGCTTCGGTTCCCGAGAGATCCGTCCATCAATTCACTGTAAAGGA 79 Query 131 TAGCTCCGGCAAGGACCTGAATATGAGCATTTACCAAGGGAAAGTCCTCCTCATCGTCAA 190 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 80 TAGCTCCGGCAAGGACCTGAATTTGAGCATTTACCAAGGAAAAGTCCTCCTCATCGTCAA 139 Query 191 TGTTGCTTCCAAATGCGGTTTCACCGAAACAAACTATACACAGCTCACCGAACTTTACCG 250 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 140 TGTTGCTTCCAAATGCGGTTTCACCGAAACAAACTATACCCAGCTCACCGAACTTTACCG 199 Query 251 GAAATACAAGGACCAAGATTTTGAGATCTTGGCATTCCCTTGCAACCAGTTTCTATACCA 310 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 GAAATTCAAGGACCAAGATTTTGAGATCTTGGCATTCCCTTGCAACCAGTTTCTATACCA 259 Query 311 GGAGCCCGGCACAAGTCAAGAGGCTCATGAATTTGCCTGCGA-ACGCTTTAAGGCCGAAT 369 ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| Sbjct 260 GGAGCCCGGCACAAGTCAAGATGCTCATGAATTTGCCTGC-ACACGCTTTAAGGCCGAAT 318 Query 370 ACCCTGTTTTCCAAAAGGTACGCGTAAACGGTCAAAACGCAGCACCAATCTATAAATTCC 429 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 319 ACCCTGTTTTCCAAAAGGTACGCGTAAACGGTCAAAACGCAGCACCACTCTATAAATTCC 378 Query 430 TTAAGGCAAGTAAACCCACCTTTCTGGGTTCCAGAATTAAGTGGAACTTCACCAAGTTCT 489 | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 379 TGAAGGCAAGTAAACCCACCTTTCTGGGTTCCAGGATAAAGTGGAACTTCACCAAGTTCT 438 Query 490 TGGTCGGCAAAGATGGCTTAGTGATTGATCGTTATGGCACGATGGTTACACCGCTATCAA 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 439 TGGTCGGCAAAGATGGCTTAGTGATTGATCGTTATGGCACGATGGTTACACCGCTATCAA 498 Query 550 TCGAGAAAGACATCAAGAAAGCTCTTGAAGACGCTTGAAAACAACAGACGAGATTGCC-A 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 499 TCGAGAAAGACATCAAGAAAGCTCTTGAAGACGCTTGAAAACAACAGACGAGATTGCCGA 558 Query 609 ATTAACAATCACGGTTAATTTTGTAATGTAAATTGCAGCTTTTATGTCGAAATTTCTTTT 668 || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 AT-AACA-TCACAGTTAATTTTGTAATGTAAATTGCAGCTTTTATGTCGAAATTTCTTTT 616 Query 669 TGGACATGTTTCTCTGTTTAGTGTATaaaaaaaGAATTCCTTTTGGAAGAGTAGGTTGCT 728 || ||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 617 TG-ACAAGTTTCTCTGTTTAGTGTATTCGAAAAGAAGTCCTTTTGGGAGAGTAGGTTGCT 675 Query 729 GTTTTC 734 |||||| Sbjct 676 GTTTTC 681 > Ahg324733 jgi|Araly1|324733|fgenesh1_pm.C_scaffold_5002277 Length=522 Score = 394 bits (213), Expect = 5e-109 Identities = 398/487 (82%), Gaps = 14/487 (3%) Strand=Plus/Plus Query 97 CCGAGAGATCCGTCCATCAATTCACTGTAAAGGATAGCTCCGGCAAGGA-CCTGAATATG 155 |||||| ||| ||||||||||||| || |||||||||||||||||||| || | | Sbjct 29 CCGAGAAATCAATCCATCAATTCACCGTCAAGGATAGCTCCGGCAAGGAGGTTG-ACCTA 87 Query 156 AGCATTTACCAAGGGAAAGTCCTCCTCATCGTCAATGTTGCTTCCAAATGCGGTTTCACC 215 ||| | || ||||||||||| | ||| |||||||||| ||||| |||||||| ||||| Sbjct 88 AGCGTATATCAAGGGAAAGTGTTGCTCGTCGTCAATGTCGCTTCTAAATGCGGATTCACG 147 Query 216 GAAACAAACTATACACAGCTCACCGAACTTTACCGGAAATACAAGGACCAAGATTTTGAG 275 ||| | || ||||| ||||| || ||||||||||||||||| || || |||| |||| | Sbjct 148 GAATCCAATTATACCCAGCTGACGGAACTTTACCGGAAATATAAAGATCAAGGGTTTGTG 207 Query 276 ATCTTGGCATTCCCTTGCAACCAGTTTCTATACCAGGAGCCCGGCACAAGTCAAGAGGCT 335 || ||||| || ||||||||||||||||| ||||| ||||| ||||| || ||||| ||| Sbjct 208 ATATTGGCCTTTCCTTGCAACCAGTTTCTGTACCAAGAGCCTGGCACCAGCCAAGATGCT 267 Query 336 CATGAATTTGCCTGCGA-ACGCTTTAAGGCCGAATACCCTGTTTTCCAAAAGGTACGCGT 394 ||| |||||||||| | || ||||||||||||||||| |||||||||||||| || || Sbjct 268 CATCAATTTGCCTG-TACTCGGTTTAAGGCCGAATACCCCGTTTTCCAAAAGGTGCGTGT 326 Query 395 AAACGGTCAAAACGCAGCACCAATCTATAAATTCCTTAAGGC-AAGTAAACCCACCTTTC 453 || || |||||||| |||||| |||| |||||||| || | ||| |||||| | |||| Sbjct 327 CAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCTAAG-AAACCCTCTTTTC 385 Query 454 -TGG--GTTCCAGAATTAAGTGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCTTAG 510 ||| | | | | || || |||||||||||||||||||||||||||||||||||| || Sbjct 386 TTGGAAG-T-C-GTATCAAATGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCCAAG 442 Query 511 TGATTGATCGTTATGGCACGA-TGGTTACACCGCTATCAATCGAGAAAGACATCAAGAAA 569 | ||||||||||||||||| | || | | || ||||| ||| ||||||||||| ||||| Sbjct 443 TCATTGATCGTTATGGCACAACTG-TGCCTCCTCTATCCATCCAGAAAGACATCGAGAAA 501 Query 570 GCTCTTG 576 || |||| Sbjct 502 GCCCTTG 508 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27029148153 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5