BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01060.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477426 jgi|Araly1|477426|fgenesh2_kg.3__127__AT3G01060.1 2327 0.0
> Ahg477426 jgi|Araly1|477426|fgenesh2_kg.3__127__AT3G01060.1
Length=1588
Score = 2327 bits (1260), Expect = 0.0
Identities = 1400/1467 (95%), Gaps = 11/1467 (1%)
Strand=Plus/Plus
Query 1 AAAAACCTTACCTGAACTaaaaaaaaaaaaa---aaaaCGAACTGAGAAGCGAAGAAGAA 57
|||||||||||||||| ||||||||||||| || | ||||||||||||||||||||
Sbjct 1 AAAAACCTTACCTGAA--AAAAAAAAAAAAATCGAATTC-AACTGAGAAGCGAAGAAGAA 57
Query 58 AATGGCGGCAGCGGCCATGGCCGTTCATCTCCCGAAACATTCTTCGTTTCTTCCGAAACC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AATGGCGGCAGCGGCCATGGCCGTTCATCTCCCGAAACATTCTTCGTTTCTTCCGAAACC 117
Query 118 CAAACTTCCATTGGATaaaaaaaC-CAACTTTCTCGGTGGGTCATTTAATTTAGGTCGAC 176
|||||||||||||||| ||||| | ||||||||||||||| ||||| |||||||||||||
Sbjct 118 CAAACTTCCATTGGAT-AAAAACCACAACTTTCTCGGTGGCTCATTGAATTTAGGTCGAC 176
Query 177 CCATGTCCGTAAACCGGGAATTTAACAGTCCGGTGATGGTCTCCGCTTCTTCGACGAGCA 236
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 177 CCATGTCCGTATACCGGGAAATTAACAGTCCGGTGTTGGTCTCCGCTTCTTCGACCAGCA 236
Query 237 AGACCGTCCTTACCGATGACGTAGACGGCGATCAAAGTAAACGCTTTTATATTAACTTCA 296
|||||||| |||| |||||||||||||| |||| ||||||||| |||||||| |||||||
Sbjct 237 AGACCGTCGTTACTGATGACGTAGACGGAGATCGAAGTAAACGGTTTTATATAAACTTCA 296
Query 297 CTGGCTTTCCTTTTCCTCTTGGTCCTTTCCTTAACCGGCGCACCATCAGAACCGAGGCGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGGCTTTCCTTTTCCTCTTGGTCCTTTCCTTAACCGGCGCACCATCAGAACCGAGGCGG 356
Query 357 TTAAAGGTTGCATATGGATGTTTGAACAAGAACAAGCTTTAGGGTTTAGCAGCGTGTCCA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 357 TTAAAGGTTGCATATGGATGTTTGAACAAGAACAAGCTTTAGGGTTTAGCAGTGTCTCCA 416
Query 417 CTAATATACGAATGACTGTCATCAAACTAAAATCTGGAGGTTTATGGGTTCATGCTCCTA 476
| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 CGAATATACGAATGACTATCATCAAACTAAAATCTGGAGGTTTATGGGTCCATGCTCCTA 476
Query 477 TTGCTCCCACCAAAGAGTGTGTCCAGCTTATTAAGGAGTTGGGAGCTCCGGTTGAGTACA 536
|||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||||
Sbjct 477 TTGCTCCCACCAAAGAGTGTATTCAGCTTATTAAGGAGTTGGAAGCTCCAGTTGAGTACA 536
Query 537 TTGTCCTGCCAACGTTTGCTTATGAGCACAAGATTTTTGTCGGTCCTTTTTCTAGAAAGT 596
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 TTGTCCTTCCAACATTTGCTTATGAGCACAAGATTTTTGTCGGTCCTTTTTCAAGAAAGT 596
Query 597 TCCCCAAGGCTCAAGTATGGGTTGCACCAAGACAATGGAGCTGGCCATTGAACTTACCAC 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCCCTAAGGCTCAAGTATGGGTTGCACCAAGACAATGGAGCTGGCCATTGAACTTACCAC 656
Query 657 TTGAGTTTTTCGGTATCTTTCGTGCTAAAATCATCAAAGACAGGGACTTATCTACGCCAT 716
| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 657 TCGAGTTTTTTGGTATCTTTCGTGCTAAAATCATTAAAGACGGGGACTTATCTACGCCAT 716
Query 717 GGGCTGAGGAGATCGAACAGAAAGTCCTAAGCTCCCCAGAAGTTGGAATTGGACCATATG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 GGGCTGAGGAGATCGAACAGAAAGTCCTAAGCTCCCCAGAAGTTGGAATTGGACCGTATG 776
Query 777 TCGAAGTAGCGTTCTACCATAAGCGGTCAAGAACCCTTTTAGTCACTGATGCTGTGATCT 836
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 777 TCGAAGTAGCGTTCTACCATAAGCGGTCAAGAACCCTTTTAGTCACCGATGCTGTGATAT 836
Query 837 TCGTCCCGCGGAAACCTCCCTCGAGTATCAGCAACGAATCCTTGTTGGCCTCGGCTAAGA 896
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 837 TCGTCCCGCGGAAACCGCCCTCGAGTATCAGCAATGAATCCTTGTTGGCCTCGGCTAAGA 896
Query 897 ATGGACTAGCTGTGAAGATACTTAGCAAAGGAAAAGACATTCCTAATGATCCTGTGGTTG 956
|||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||
Sbjct 897 ATGGACTAGCTGTGAAGATACTTAGCAAAGGAAAAGACGTACCCAATGATCCAGTGGTTG 956
Query 957 ATAATCCTAACACCCGCCAAAAAGGATGGGAAAGAATGGTTCTGCAAATCCTATTTCTTG 1016
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 957 ATAATCCGAACACCCGCCAAAAAGGGTGGGAAAGAATGGTTCTACAAATCCTATTTCTTG 1016
Query 1017 GTCCCTCGAATCTCTTGGAACCAAACGCAAGCTTCGCACGAATGTCACAGAAGCTGATCG 1076
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1017 GTCCCTCGAATCTCTTGGAACCAAACGCAAGCTTCGCACGAATGTCGCAGAAGCTGATCG 1076
Query 1077 TTTCTCCCATTGTAAAGACTTTGGTCTTTAGCAAAGTCCCTGAGAAGGTGAGGGATTGGA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTTCTCCCATTGTAAAGACTTTGGTCTTTAGCAAAGTCCCTGAGAAGGTGAGGGATTGGA 1136
Query 1137 TCGATGAGATAGCCCGTGACTGGAGATTTAAAAGGATTATCCCAGCTCATTTCGAAGCTC 1196
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 TCGATGAGATAGCCCGGGACTGGAGATTTAAAAGGATAATCCCAGCTCATTTCGAAGCTC 1196
Query 1197 CAATAAACGCAGGAAGATCAGATTTTCTAGCTGCGTTTGGGTTCCTAGAGGATCTTCTAG 1256
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1197 CAATAAAAGCAGGAAGATCAGAGTTTCTAGCTGCGTTTGGATTCCTAGAGGATCTTCTAG 1256
Query 1257 GGGAAAGATATGTAACTCGTCCTTCGCTCTCTCTTCTCTTCACTTCACTAATGGGAAAAG 1316
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1257 GGGAAAGATATGTAACTCGTCCTTCGCTCTCTCTTCTTTTCACTTCGCTAATGGGAAAAG 1316
Query 1317 CTGCGAGCTATTTTCCTCCAGACGATATGAGAACTCTCTCTTCACTTGATCAGTTCTTAG 1376
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1317 CTGCGAGCTATTTTCCTCCAGACGATATGAGAACTCTCTCTTCTCTTGATCAGTTCTTAG 1376
Query 1377 TCTCTGTTGGGGCTGTGAAAAAGACAGTATCCGGTAGAAAACGAAGATGATGGCAAAACA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCTCTGTTGGGGCTGTGAAAAAGACAGTATCCGGTAGAAAACGAAGATGATGGCAAAACA 1436
Query 1437 GAAAAATGGAAGATACAGC-TT-TAAT 1461
|||||| ||||| |||| || ||||
Sbjct 1437 GAAAAAAA-AAGATTCAGCCTTGTAAT 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5