BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01120.1
Length=2234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477417 jgi|Araly1|477417|fgenesh2_kg.3__118__AT3G01120.1 3271 0.0
> Ahg477417 jgi|Araly1|477417|fgenesh2_kg.3__118__AT3G01120.1
Length=2044
Score = 3271 bits (1771), Expect = 0.0
Identities = 1959/2047 (96%), Gaps = 24/2047 (1%)
Strand=Plus/Plus
Query 1 GCACCTCTAAACCACAAACAAAAagagagagaagagaacgagagaATCATTGAGAAACGA 60
||||||||||| | | ||||| ||||| || |||||| |||||||||||| ||||||
Sbjct 1 GCACCTCTAAA-C-C--ACAAAGAGAGA-AG-AGAGAA-GAGAGAATCATT--GAAACG- 50
Query 61 AACAACAATGGCCGTCTCATCATTCCAGTGCCCTACCATCTTCTCCTCCTCCTCAATCTC 120
| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 51 -A-AACAATGGCCGTCTCATCATTCCAGTGCCCTACGATCTTCTCCTCATCCTCCATCTC 108
Query 121 CGGCTTTCAATGCCGTTCTGATCCAGATCTCGTCGGTTCTCCCGTCGGTGGATCATCTCG 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 109 CGGCTTTCAATGCCGTTCTGATCCAGATCTCGTCGGTTCTCCCGTTGGTGGATCATCTCG 168
Query 181 CCGTCGTGTCCATGCCTCCGCCGGGATTTCTTCCTCATTCACCGGGGACGCTGGATTATC 240
||| |||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct 169 CCGCCGTGTCAATGCCACCGCCGGGATTTCTTCCTCATTCACCGGAGACGGTGGATTATC 228
Query 241 CTCCAGGATCTTAAGATTTCCTCCTAATTTCGTCCGTCAGCTGAGCATTAAAGCCCGTAG 300
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 229 CTCCAGGATCTTGAGATTTCCTCCTAATTTCGTCCGTCAGCTGAGTATTAAAGCCCGTAG 288
Query 301 AAACTGTAGCAACATCGGTGTTGCACAGATCGTGGCGGCTAAGTGGTCCAACAACCCATC 360
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 289 AAACTGTAGCAACATCGGTGTTGCGCAGATCGTGGCTGCTAAGTGGTCCAACAACCCTTC 348
Query 361 CTCCGCGTTACCTTCGGCGGCGGCGGCTGCTGCTACCTCGTCTGCATCTGCGGTTTCTTc 420
||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 349 CTCCGGGTTACCTTCGGCGGCGGCGGCGGCTGCTGCCTCGTCTGCATCTGCGGTTTCTTC 408
Query 421 cgccgcatctgcagccgcagcctcgtccgccgccgccgcccctgtggctgccgcgcct-c 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 409 CGCCGCATCTGCAGCCGCAGCCTCGTCCGCCGCCGCCGCCCCTGTGGCTGCCGCTCCTCC 468
Query 480 c--cgTCGTGCTGAAAAGCGTCGATGAGGAGGTTGTGGTGGCCGAGGAGGGGATCAGGGA 537
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 469 CGTCGTCGTGCTGAAAAGCGTCGATGAGGAGGTTGTGGTGGCCGAGGAGGGGATTAGGGA 528
Query 538 GAAGATAGGTAGTGTACAGCTGACGGATTCCAAACATTCTTTCTTGAGCTCCGATGGGAG 597
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 529 GAAGATAGGTAGTGTACAGCTGACGGATTCCAAACATTCATTCTTGAGCTCCGATGGGAG 588
Query 598 CCTCACTGTTCATGCCGGTGAAAGATTAGGCCGTGGTATAGTGACGGATGCTATCACTAC 657
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 589 CCTCACTGTTCATGCCGGTGAAAGATTAGGTCGTGGTATAGTGACGGATGCTATCACTAC 648
Query 658 TCCTGTAGTCAACACATCTGCCTACTTCTTCAAGAAAACTGCTGAGCTTATTGACTTCAA 717
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 649 TCCTGTAGTCAACACATCTGCCTATTTCTTCAAGAAAACTGCTGAGCTTATTGACTTCAA 708
Query 718 GGAGAAAAGGAGTGTGAGTTTCGAGTATGGTCGTTATGGTAACCCTACGACTGTGGTACT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GGAGAAAAGGAGTGTGAGTTTCGAGTATGGTCGTTATGGTAACCCTACGACTGTGGTACT 768
Query 778 TGAAGATAAGATAAGTGCACTTGAAGGGGCTGAATCAACTTTGGTTATGGCATCTGGGAT 837
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 769 TGAAGAGAAGATAAGTGCACTTGAAGGAGCTGAATCAACTTTGGTTATGGCATCTGGGAT 828
Query 838 GTGTGCAAGCACTGTTATGCTTTTGGCATTGGTTCCTGCTGGTGGACACATTGTCACTAC 897
|||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||
Sbjct 829 GTGTGCAAGCACTGTTATGCTTTTGGCACTGGTTCCTGCCGGTGGACACATTGTGACAAC 888
Query 898 TACTGATTGCTACAGGAAGACTAGGATCTTCATGGAGAATTTTCTTCCCAAGTTGGGGAT 957
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 889 GACTGATTGCTACAGGAAGACAAGGATTTTCATGGAGAATTTTCTTCCCAAGTTGGGGAT 948
Query 958 CACTGTCACTGTGATTGATCCTGCTGATATCGCAGGGCTTGAAGCTGCAGTGAATGAGTT 1017
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CACTGCCACTGTGATTGATCCTGCTGATATCGCAGGGCTTGAAGCTGCAGTGAATGAGTT 1008
Query 1018 CAAGGTATCTCTGTTCTTCACTGAGTCCCCGACAAACCCATTCCTTAGATGTGTCGACAT 1077
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CAAGGTTTCTCTGTTCTTCACTGAGTCCCCGACAAACCCATTCCTTAGATGTGTCGACAT 1068
Query 1078 TGAGCTAGTTTCAAAAATATGCCACAAGAGGGGAACTCTGGTTTGCATTGATGGCACCTT 1137
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1069 TGAGCTAGTTTCAGAAATATGCCACAAAAGGGGAACTCTTGTTTGCATTGATGGCACCTT 1128
Query 1138 TGCAACACCTCTGAATCAGAAAGCCCTTGCTCTTGGTGCTGATCTTGTCGTGCACTCTGC 1197
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1129 TGCAACACCTCTGAATCAGAAAGCCCTTGCTCTTGGTGCTGATCTTGTTGTGCACTCTGC 1188
Query 1198 TACAAAGTACATTGGAGGACACAATGATGTTCTTGCTGGATGCATCTGTGGTTCACTGAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TACAAAGTACATTGGAGGACACAATGATGTTCTTGCTGGATGCATCTGTGGTTCACTGAA 1248
Query 1258 GTTGGTTTCAGAAATTCGCAATCTGCATCATGTGTTGGGAGGAACACTTAACCCAAACGC 1317
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1249 GTTGGTTTCAGAAATTCGCAATCTGCATCATGTGTTGGGAGGCACACTTAACCCAAACGC 1308
Query 1318 TGCGTACCTAATCATCCGAGGCATGAAGACATTGCATCTTCGTGTACAGCAACAGAATTC 1377
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TGCATACCTAATCATCCGAGGCATGAAGACATTGCATCTTCGTGTACAGCAACAGAATTC 1368
Query 1378 GACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGGTGAGTCATGTGTACTA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGGTGAGTCATGTGTACTA 1428
Query 1438 TCCAGGCCTTCCAAGTCATCCCGAACATGAACTCGCCAAGCGACAAATGACTGGTTTTGG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 TCCAGGCCTTCCAAGTCATCCCGAACATGAACTCGCCAAGCGACAAATGACTGGTTTTGG 1488
Query 1498 AGGTGTGGTCAGTTTCGAGATTGATGGAGACATTGAAACGACAATCAAGTTTGTGGATTC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 AGGTGTGGTCAGTTTCGAGATTGATGGAGACATTGAAACGACAATCAAGTTTGTGGATTC 1548
Query 1558 TCTAAAGATTCCTTACATTGCACCATCCTTCGGTGGCTGCGAAAGCATTGTTGACCAACC 1617
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1549 TCTAAAGATTCCTTACATCGCACCATCTTTCGGTGGCTGTGAAAGCATTGTTGACCAACC 1608
Query 1618 TGCTATCATGTCCTACTGGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TGCTATCATGTCCTACTGGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGA 1668
Query 1678 TAACTTGGTTCGTTTCAGCTTTGGAGTTGAAGACTTTGAAGATGTCAAAGCTGACATTCT 1737
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 TAACTTGGTTCGTTTCAGTTTTGGAGTTGAAGACTTTGAAGATGTCAAAGCTGACATTCT 1728
Query 1738 TCAAGCTCTCGAAGCCATCTGAAAATGACA--CATCACACAAAAACGCTGTCGTTTCTTT 1795
|||||||||||||||||||||||||||| | || ||| ||||||||| |||||||||||
Sbjct 1729 TCAAGCTCTCGAAGCCATCTGAAAATGATATACAACACCCAAAAACGCCGTCGTTTCTTT 1788
Query 1796 GTCCTTTATTTATCTCTCTTTGCTGTTTTCAGTCACCGTAATAATGATGTCTTTGAACTA 1855
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GTCTTTTATTTATCTCTCTTTGCTGTTTTCAGTCACCGTAATAATGATGTCTTTGAACTA 1848
Query 1856 TT-GTTCCGCGACATTTACGTTCCGAAATAATCGTGTACTATTATGAT-GTTTGTTGTGC 1913
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1849 TTTGTTCCGCGACATTTACGTTCCGAAATAATCGTGTACTATTATTATTGTTTGTTGTGC 1908
Query 1914 TATA-TAATAAATTCTGTTTAGTTCGTTTTGCGTCTTAAAGAGGTTAAATTAGATAACT- 1971
|||| ||| || |||| |||||| |||||| | ||||||| ||||||||| ||||| |
Sbjct 1909 TATAGTAA-AA-TTCTATTTAGTCCGTTTTATGCCTTAAAGTGGTTAAATTGGATAA-TA 1965
Query 1972 GGTCCCATGTGAACGACCATTGTGGCCATTGCTTTGTGGTAAGAACTCCTTGTGCTTGGA 2031
|| |||||| ||||||||| ||||||||| |||||||||||||||| ||||||| |||||
Sbjct 1966 GGCCCCATGAGAACGACCAGTGTGGCCATGGCTTTGTGGTAAGAACACCTTGTGTTTGGA 2025
Query 2032 ACCTCAA 2038
|| ||||
Sbjct 2026 ACTTCAA 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84103260960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5