BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01290.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg477399 jgi|Araly1|477399|fgenesh2_kg.3__100__AT3G01290.1 1585 0.0 > Ahg477399 jgi|Araly1|477399|fgenesh2_kg.3__100__AT3G01290.1 Length=1108 Score = 1585 bits (858), Expect = 0.0 Identities = 1015/1085 (94%), Gaps = 34/1085 (3%) Strand=Plus/Plus Query 1 AAACTTACAGAGAGACAAATACCTATAATAAGCCATTCATAAT-CTTCTTGCTTCTT-GT 58 ||||||||| ||||||||||| | | |||| | ||| | | ||||||| ||||| || Sbjct 1 AAACTTACACAGAGACAAATA--T-TCATAA-TC-TTC-T--TGCTTCTTG-TTCTTAGT 51 Query 59 TC---AGAA-TAATGGGGAATCTTTTCTGTTGCGTGCTTGTGAAGCAATCAGATGTTGCG 114 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 TCTGAAGAATTAATGGGGAATCTTTTCTGTTGCGTGCTTGTGAAGCAATCAGATGTTGCG 111 Query 115 GTCAAGGAGAGATTTGGCAAATTCCAAAAAGTACTTAATCCAGGTCTCCAATTTGTTCCA 174 |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 112 GTCAAGGAGAGATTTGGCAAATTCCAAAAAATACTTAATCCAGGTCTCCAGTTTGTTCCC 171 Query 175 TGGGTCATCGGTGATTACGTCGCCGGTACACTGACCCTTCGTCTTCAGCAACTCGATGTT 234 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 172 TGGGTCATCGGTGATTACGTCGCCGGTACACTGACCCTCCGTCTTCAGCAACTCGATGTT 231 Query 235 CAGTGTGAAACCAAAACAAAGGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATAC 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 CAGTGTGAAACCAAAACAAAGGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATAC 291 Query 295 AGAGTCTTAGCTGACAAGGCAAGTGATGCTTTTTACAGACTCAGCAATCCAACCACCCAA 354 |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 292 AGAGTCTTGGTTGACAAGGCAAGTGATGCTTTTTACCGACTCAGCAATCCAACCACCCAA 351 Query 355 ATCAAAGCCTACGTCTTTGATGTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGAT 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 ATCAAAGCCTACGTCTTTGATGTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGAT 411 Query 415 GTGTTCGAGCAGAAGAATGAAATTGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATG 474 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 412 GTGTTCGAGCAGAAGAATGAAATCGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATG 471 Query 475 ACTGCTTATGGTTACGAAATCCTTCAAACCCTAATTATCGACATTGAGCCTGATCAACAG 534 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 472 ACTGCTTATGGTTACGAGATCCTTCAAACCCTAATCATCGACATCGAGCCTGATCAACAG 531 Query 535 GTTAAACGTGCCATGAACGAAATCAACGCCGCGGCGAGGATGAGAGTGGCAGCGAGCGAA 594 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 532 GTTAAACGTGCCATGAACGAAATCAACGCCGCGGCGAGGATGAGAGTGGCCGCGAACGAA 591 Query 595 AAAGCAGAGGCTGAGAAAATCATTCAGATCAAAAGAGCAGAGGGTGAAGCAGAGTCAAAG 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 AAAGCAGAGGCTGAGAAAATCATTCAGATCAAAAGAGCAGAGGGTGAAGCAGAGTCAAAG 651 Query 655 TACCTGTCGGGACTCGGAATCGCTCGGCAGAGACAAGCGATCGTGGACGGTCTGAGAGAC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 TACCTGTCGGGACTCGGAATCGCTCGGCAGAGACAAGCGATCGTGGACGGTCTGAGAGAC 711 Query 715 AGTGTTCTAGGGTTCGCAGGAAACGTGCCAGGGACGTCAGCGAAGGATGTGTTGGACATG 774 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 712 AGTGTTCTAGGGTTCGCAGGAAACGTGCCAGGGACGTCAGCCAAGGATGTGTTGGACATG 771 Query 775 GTGATGATGACTCAGTACTTTGACACAATGAGAGATATCGGAGCAACTTCTAAATCCTCT 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 772 GTGATGATGACTCAGTACTTTGACACAATGAGAGATATCGGAGCAACTTCTAAAGCCTCG 831 Query 835 GCGGTGTTTATCCCTCACGGTCCAGGCGCCGTCTCTGACGTGGCAGCGCAGATTCGAAAT 894 || |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 832 GCCGTGTTTATCCCTCACGGTCCCGGCGCCGTCTCTGACGTGGCAACGCAGATTCGAAAT 891 Query 895 GGATTATTACAGGCCAACAATGCCTCCT------AATCACTCAAGTCAAATTGTCTTGGT 948 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 892 GGATTATTACAGGCCAACAATGCCTCCTCCTCCTAATCACTCAAGTCAAATTGTTTTGGT 951 Query 949 CGTCTCTTTATA-TATTTTTGTATCTTCTT-ATTAAAAA--GGTAAATTTGACTTTTAAT 1004 ||||||||| || || ||||||||||| || |||||||| ||||||| | | | | | Sbjct 952 CGTCTCTTT-TAATACTTTTGTATCTTTTTTATTAAAAAAAGGTAAATAT-A-TAATGGT 1008 Query 1005 ATAATGGT-GTGCTTATTGTGATT-TGTCATT-ATGTTTGTACCTATCTCTTTTGTGAGT 1061 || || | ||| || | || ||| ||| ||| ||||||||||||||||||| ||||||| Sbjct 1009 GTACTGATTGTGATT-T-GTCATTATGT-ATTTATGTTTGTACCTATCTCTTCTGTGAGT 1065 Query 1062 TGTGT 1066 ||||| Sbjct 1066 TGTGT 1070 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5