BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01435.1 Length=811 Score E Sequences producing significant alignments: (Bits) Value Ahg317046 jgi|Araly1|317046|fgenesh1_pm.C_scaffold_3000062 582 1e-165 Ahg927619 jgi|Araly1|927619|scaffold_300076.1 113 2e-24 > Ahg317046 jgi|Araly1|317046|fgenesh1_pm.C_scaffold_3000062 Length=348 Score = 582 bits (315), Expect = 1e-165 Identities = 337/348 (97%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 230 ATGGATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAATAGAGTT 289 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGACCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTCGAGAATAGAGTT 60 Query 290 GTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGAGCCCTTCTGGTCCC 349 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 61 GTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCTAGGCCTTCTGGACCC 120 Query 350 AAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGTTTATGCAATCTATGAAGGATATACAA 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 AAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGTTTATGCAATCTATGAAGGATATTCAA 180 Query 410 GTGACACTAAGGGAAGAGATCAAAAGCGCTTGCGAGTACCGTCCCTTTGAGAAATGCGAT 469 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGACACTAAGAGAAGAGATCAAAAGCGCTTGCGAGTACCGTCCCTTTGAGAAATGCGAT 240 Query 470 TACAACGCGAGAATAGCCAATGAGATCTGCTTCCAGAAGCTTGAATATGTTCTCACGCAG 529 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACAACGCTAGAATAGCTAATGAGATCTGCTTCCAGAAGCTTGAATATGTTCTCACGCAG 300 Query 530 CTTGAAGATCTGAAACAAACTGCTGACCGGTATCCTTCTTCTGATTGA 577 ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 301 CTTGATGATCTGAAACAAACTGCTGACCAGTATCCTTCTTCTGATTGA 348 > Ahg927619 jgi|Araly1|927619|scaffold_300076.1 Length=835 Score = 113 bits (61), Expect = 2e-24 Identities = 112/135 (83%), Gaps = 9/135 (7%) Strand=Plus/Plus Query 211 AGAAATCGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCGTTGC-AGCGACTCC 269 ||| || |||||||||||||||||||||||||||||||||||||| |||| | ||| ||| Sbjct 2 AGATATTGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCTTTGCCA-CGAGTCC 60 Query 270 AGAATGTTGAGAATAGAGTTGTTAAG-GTTTTGGAACTAG-CTGGTGGAGTGATGGAAGA 327 | ||||| ||||| ||||| | | | ||||||||||| | | || ||||||||| | Sbjct 61 AAAATGTCGAGAAGGGAGTT---A-GCGATTTGGAACTAGGC-GAAGGCGTGATGGAAAA 115 Query 328 ACTCGCGAGCCCTTC 342 ||||| ||||||||| Sbjct 116 ACTCGTGAGCCCTTC 130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29964612762 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5