BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01435.1

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317046 jgi|Araly1|317046|fgenesh1_pm.C_scaffold_3000062           582    1e-165
  Ahg927619 jgi|Araly1|927619|scaffold_300076.1                        113    2e-24 


> Ahg317046 jgi|Araly1|317046|fgenesh1_pm.C_scaffold_3000062
Length=348

 Score =  582 bits (315),  Expect = 1e-165
 Identities = 337/348 (97%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  230  ATGGATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAATAGAGTT  289
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGACCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTCGAGAATAGAGTT  60

Query  290  GTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGAGCCCTTCTGGTCCC  349
            |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct  61   GTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCTAGGCCTTCTGGACCC  120

Query  350  AAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGTTTATGCAATCTATGAAGGATATACAA  409
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  AAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGTTTATGCAATCTATGAAGGATATTCAA  180

Query  410  GTGACACTAAGGGAAGAGATCAAAAGCGCTTGCGAGTACCGTCCCTTTGAGAAATGCGAT  469
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTGACACTAAGAGAAGAGATCAAAAGCGCTTGCGAGTACCGTCCCTTTGAGAAATGCGAT  240

Query  470  TACAACGCGAGAATAGCCAATGAGATCTGCTTCCAGAAGCTTGAATATGTTCTCACGCAG  529
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TACAACGCTAGAATAGCTAATGAGATCTGCTTCCAGAAGCTTGAATATGTTCTCACGCAG  300

Query  530  CTTGAAGATCTGAAACAAACTGCTGACCGGTATCCTTCTTCTGATTGA  577
            ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct  301  CTTGATGATCTGAAACAAACTGCTGACCAGTATCCTTCTTCTGATTGA  348


> Ahg927619 jgi|Araly1|927619|scaffold_300076.1
Length=835

 Score =  113 bits (61),  Expect = 2e-24
 Identities = 112/135 (83%), Gaps = 9/135 (7%)
 Strand=Plus/Plus

Query  211  AGAAATCGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCGTTGC-AGCGACTCC  269
            ||| || |||||||||||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct  2    AGATATTGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCTTTGCCA-CGAGTCC  60

Query  270  AGAATGTTGAGAATAGAGTTGTTAAG-GTTTTGGAACTAG-CTGGTGGAGTGATGGAAGA  327
            | ||||| |||||  |||||   | | | ||||||||||| | |  || ||||||||| |
Sbjct  61   AAAATGTCGAGAAGGGAGTT---A-GCGATTTGGAACTAGGC-GAAGGCGTGATGGAAAA  115

Query  328  ACTCGCGAGCCCTTC  342
            ||||| |||||||||
Sbjct  116  ACTCGTGAGCCCTTC  130



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29964612762


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5