BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01480.1 Length=1676 Score E Sequences producing significant alignments: (Bits) Value Ahg477375 jgi|Araly1|477375|fgenesh2_kg.3__76__AT3G01480.1 2305 0.0 > Ahg477375 jgi|Araly1|477375|fgenesh2_kg.3__76__AT3G01480.1 Length=1574 Score = 2305 bits (1248), Expect = 0.0 Identities = 1448/1542 (94%), Gaps = 23/1542 (1%) Strand=Plus/Plus Query 56 TTTCTCATGTTCTTTTCGGACAGAAC-AAAACTCCCTAATCCAAATGTCAATTCCTTTGG 114 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 23 TTTCTCATGTTCTTTTCGGACAGAACAAAAACTCCCTAATCC-AATGTCAATTCCTTTGG 81 Query 115 TCTCTCTCTGAATAATCATCTCTCTTCAAACCC-TATTCAATTTTAACTATCGATCTTCG 173 ||| |||||||| |||||||||||| ||||||| | |||||||||||| | | || Sbjct 82 TCTGTCTCTGAAAAATCATCTCTCTCCAAACCCTTTTTCAATTTTAAC--T--A---TC- 133 Query 174 GCTAAGTCTCCAATGGCGGCGGCGTTTGCCTCTCTTCCCACATTTAGTGTCGTCAATTCC 233 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 134 G---A-TCTCCAATGGCGGCGGCGTTTGCCTCTCTTCCCACATTTAGTGTCGTCAATTCC 189 Query 234 TCCAGATTTCCCAGAAGAAGAATCGGTTTTTCTTGCTCCAAAAAGCCCCTCGAAGTTCGT 293 ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| Sbjct 190 TCCAGATTTCCCAGAAGAAGAATCGATTTTTCTTGCTCCAAAAAACCCCTCCAAGTTCGT 249 Query 294 TGTTCTTCCGGCAATACTCGTTACACTAAGCAGAGAGGGGCATTTACATCACTGAAAGAA 353 | || ||||||||| |||||| | | ||||||||||||| ||||| ||||| |||||||| Sbjct 250 TCTTGTTCCGGCAACACTCGTGAAAATAAGCAGAGAGGGACATTTGCATCATTGAAAGAA 309 Query 354 TGTGCGATTTCATTAGCTTTATCGGTTGGTTTAATGGTTTCAGTACCTTCGATTGCTTTG 413 ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| | Sbjct 310 TGTGCCATTTCATTAGCTTTATCGGTTGGTTTAATAGCTTCAGTACCTTCGATTGCTTCG 369 Query 414 CCTCCCAATGCTCACGCAGTGGCGAATCCAGTGATTCCAGATGTTTCAGTGTTGATCTCC 473 |||||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||| Sbjct 370 CCTCCCAATGCTTACGCAGTGACGAATCCAGCGATTCCAGATGTTTCGGTGTTGATCTCT 429 Query 474 GGTCCTCCGATTAAAGATCCGGAAGCTTTACTAAGATATGCATTGCCTATTGACAACAAA 533 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 430 GGTCCTCCGATTAAAGATCCAGAAGCTTTACTAAGATATGCATTGCCTATTGACAATAAA 489 Query 534 GCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGC 593 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 490 GCCATCAGAGAAGTACAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGC 549 Query 594 GTTAAGGCTCTAGATTCTGTTGAACGGAATGTGAGGCAGGCAAGTAGAACATTGCAGCAA 653 ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 550 GTTAAGGCTCTCGATTCTGTTGAACGGAATGTGAGGCAGGCAAATAGATCATTGCAGCAA 609 Query 654 GGGAAAAGTATAATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATG 713 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 GGGAAAACTATGATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATG 669 Query 714 ATTGAAAAGTTGGAAGCTGGGATGCAAGATATGCTTAAGATAGTGGAAGATCGAAAAAGA 773 || ||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| Sbjct 670 ATCGAAAAGTTGGAAGCTGGTATGCAAGATATGCTAAAGATTGTGGAAGATCGTAAAAGA 729 Query 774 GACGCAGTTGCTCCAAAACAGAAAGAAATTCTCAAATATGTTGGCGGAATAGAAGAGGAT 833 || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 GATGCGGTTGCTTCAAAACAGAAAGAAATTCTCAAATATGTTGGCGGAATAGAAGAGGAT 789 Query 834 ATGGTTGATGGCTTTCCATATGAAGTGCCGGAAGAGTATCGGAACATGCCTCTCCTCAAG 893 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 790 ATGGTTGATGGCTTCCCATATGAAGTGCCGGAAGAGTATCGGAACATGCCTCTTCTCAAA 849 Query 894 GGAAGAGCTAGTGTGGACATGAAGGTCAAGATCAAGGACAATCCCAACATCGAGGACTGT 953 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 850 GGAAGAGCCAGTGTGGACATGAAGGTCAAGATCAAGGACAATCCCAACATCGAGGACTGT 909 Query 954 GTGTTCCGCATTGTTCTTGATGGTTATAACGCCCCTGTTACCGCCGGAAACTTTGTGGAC 1013 ||||||||||||||||||||||||||||||||||||||||| || || || ||||||||| Sbjct 910 GTGTTCCGCATTGTTCTTGATGGTTATAACGCCCCTGTTACTGCGGGGAATTTTGTGGAC 969 Query 1014 TTGGTAGAGAGGCATTTCTACGATGGCATGGAGATCCAGAGATCTGATGGATTTGTGGTA 1073 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 970 TTGGTAGAGCGGCATTTCTATGATGGCATGGAGATCCAGAGATCTGATGGATTTGTGGTA 1029 Query 1074 CAAACGGGAGATCCAGAGGGTCCTGCGGAAGGATTTATCGATCCAAGCACAGAGAAAACG 1133 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1030 CAAACAGGAGATCCAGAGGGTCCTGCGGAAGGATTTATCGATCCAAGCACAGAGAAAACG 1089 Query 1134 AGGACGGTTCCTCTAGAGATTATGGTGACTGGAGAGAAAACGCCTTTTTACGGCTCAACT 1193 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1090 CGGACGGTTCCTCTAGAGATTATGGTGACTGGAAAGAAAACGCCTTTTTACGGCTCAACT 1149 Query 1194 CTTGAAGAACTTGGTCTTTACAAGGCTCAGGTTGTGATTCCTTTCAACGCTTTTGGGACA 1253 ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1150 CTTGAAGAACTGGGTCTTTACAAGGCTCAGGTTGTGCTTCCTTTCAACGCATTTGGGACA 1209 Query 1254 ATGGCAATGGCAAGAGAAGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTG 1313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1210 ATGGCAATGGCAAGAGAAGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTG 1269 Query 1314 CTAAAAGAGAGTGAGCTGACACCAAGCAATTCCAACATCTTGGATGGTCGTTACGCTGTC 1373 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1270 CTAAAAGAGAGCGAGCTGACTCCAAGCAATTCCAACATCTTGGACGGTCGTTACGCTGTC 1329 Query 1374 TTTGGTTACGTTACTGATAACGAAGATTTTCTAGCTGATCTTAAAGTTGGTGATGTTATC 1433 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1330 TTTGGTTACGTTACTGACAACGAAGATTTTCTTGCTGATCTTAAAGTTGGTGATGTTATT 1389 Query 1434 GAATCCATTCAAGTTGTCTCCGGTTTAGAGAACCTCGCTAACCCGAGTTACAAAATCGCC 1493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1390 GAATCCATTCAAGTTGTCTCCGGTTTAGAGAACCTCGCTAACCCGAGTTACAAAATCGCC 1449 Query 1494 GGTTAACTCCTCTTATCTTTTTCCTTTTCTTGGTTC---GTAATTAATACTCTGTTTATT 1550 |||||||| | ||||| ||| |||||||||||||| |||| |||||||||||||||| Sbjct 1450 GGTTAACTTCGCTTATATTTC-CCTTTTCTTGGTTCATAGTAAGTAATACTCTGTTTATT 1508 Query 1551 TT-AATTTTGTGAGAGTATATT-AAA-GGTGCATGTCTTTTT 1589 || ||||||||||||||| ||| ||| ||||||| |||||| Sbjct 1509 TTTAATTTTGTGAGAGTA-ATTTAAAAGGTGCATCACTTTTT 1549 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62848904250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5