BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01500.2 Length=1319 Score E Sequences producing significant alignments: (Bits) Value Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2 2169 0.0 Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2 778 0.0 > Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2 Length=1314 Score = 2169 bits (1174), Expect = 0.0 Identities = 1273/1320 (96%), Gaps = 9/1320 (1%) Strand=Plus/Plus Query 1 ATGAGACTCCGTTCTTTTAAACTCCCAAATCTTTCAACCAATCCCATTATTCACTTAAGT 60 |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1 ATGAGACTCCATTCTTTTAAACTCTCAAATCTTTCAACCAATCCCATAATTCACTTAAGT 60 Query 61 ATATAGTAGCTTCCATAAGAG-TCTTAGTTCTAACTATAAATACACAT-ATCTCACTCTC 118 ||||||||||||||| ||||| |||||||| ||||||||||||||| | ||||||||||| Sbjct 61 ATATAGTAGCTTCCACAAGAGATCTTAGTTATAACTATAAATACAC-TGATCTCACTCTC 119 Query 119 TCTGATCTCCGCTTCTCTTCGCCAACAAATGTCGACCGctcctctctccggcttctttct 178 ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| || Sbjct 120 ACTGATCTCCACTTCTCTTCACCAGCAAATGTCGACCGCTCCTCTCTCCGGCTTCTTCCT 179 Query 179 cacttcactttctccttctcaatcttctctccagaaactctctcttcgtacttcttcCAC 238 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CACTTCCCTTTCTCCTTCTCAATCTTCTCTCCAGAAACTCTCTCTTCGTACTTCTTCCAC 239 Query 239 CGTCGCTTGCCTCCCAC-CCGCCTCTTCTTCTTCCTCATCTTCCTCCTCCTCGTCTTCCC 297 ||||||||||||||| | || ||||||||||||||||| ||||||||||||||||||| Sbjct 240 CGTCGCTTGCCTCCC-CTCCTCCTCTTCTTCTTCCTCA---TCCTCCTCCTCGTCTTCCC 295 Query 298 GTTCCGTTCCAACGCTTATCCGTAACGAGCCAGTTTTTGCCGCTCCTGCTCCTATCATTG 357 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 296 GTTCCGTTCCAACCCTTATCCGTAACGAGCCCGTTTTTGCCGCTCCTGCTCCTATCATTG 355 Query 358 CCCCTTATTGGAGTGAAGAGATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCA 417 ||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||| Sbjct 356 CCCCTTATTGGAGCGAAGAGATGGGAAGCGACGCATACGAAGAGGCTATTGAAGCTCTCA 415 Query 418 AGAAGCTTCTCATCGAGAAGGAAGAGCTAAAGACGGTTGCAGCGGCAAAGGTGGAGCAGA 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 AGAAGCTTCTCATCGAGAAGGAAGAGCTAAAGACGGTTGCAGCGGCAAAGGTGGAGCAGA 475 Query 478 TCACAGCGGCTCTTCAGACAGGTACTTCATCCGACAAGAAAGCTTTCGACCCCGTCGAAA 537 |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 476 TCACGGCGGCGCTTCAGACAGGTACTTCGTCCGACAAGAAAGCTTTCGACCCCGTTGAAA 535 Query 538 CCATTAAGCAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGT 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 ACATTAAGCAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGT 595 Query 598 ACGGTGAGCTCGCAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCAC 657 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 596 ACGGTGAGCTCGCAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCGTGTTCGGACTCAC 655 Query 658 GTGTGTGTCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACA 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GTGTGTGTCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACA 715 Query 718 TAGCCAACATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTG 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TAGCCAACATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTG 775 Query 778 AATACGCGGTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTG 837 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 AATACGCGGTCTTGCACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTG 835 Query 838 GTGGGATCAAAGGGCTTATGTCTTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAG 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 GTGGGATCAAAGGGCTTATGTCTTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAG 895 Query 898 AGGACTGGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGATT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 AGGACTGGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGATT 955 Query 958 CAGCCTTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAA 1017 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 956 CAGCCTTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCAGTGAATGTTTCATTAGCAA 1015 Query 1018 ACCTATTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGG 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 ACCTATTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGG 1075 Query 1078 GAGGCTACTATGACTTCGTCAAGGGTGCTTTTGAGCTTTGGGGACTTGAATTTGGCCTCT 1137 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1076 GAGGCTACTATGACTTCATTAAGGGTGCTTTTGAGCTTTGGGGACTTGAATTTGGCCTCT 1135 Query 1138 CCGAAACTAGCTCTGTTAAAGATGTGGCTACCATACTACATTGGAAGCTGTAGGAAACTC 1197 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1136 CCGAAACTAGCTCTGTGAAAGATGTGGCTACCATACTACATTGGAAGCTGTAGGAA-CTC 1194 Query 1198 TTTGAAGCCTTACCCGATTTCACATTGTCAATTCAATAACACCAAGTTGTTGTTTACATG 1257 |||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |||| Sbjct 1195 TTTGAAGCCTTACCCGATTTCACATTTTCAATTCAATAACACCAAGTTATTCTTTTCATG 1254 Query 1258 CAGATCTTGATGAAACTGGTTTTTGATTTTACAGAATTAAAATCTTGGGGGACAGAAATT 1317 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1255 TAGATCTTGATGAAAGTGGTTTTTGATTTTACAGAATTAAAATCTTGGGGGACAAAAATT 1314 > Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2 Length=1407 Score = 778 bits (421), Expect = 0.0 Identities = 652/762 (86%), Gaps = 21/762 (3%) Strand=Plus/Plus Query 372 GAAGAGATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATC 431 |||| |||||||| |||| |||| || || || || ||||||||||||||||||||||| Sbjct 401 GAAG-GATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATT 459 Query 432 GAGAAGGAAGAGCT-AAAGACGGTTGCAGCGG-CAAAGGTGGAGCAGATCACAGCGGCTC 489 |||||||| ||||| || || || || |||| |||| ||| | ||||||| |||| | Sbjct 460 GAGAAGGATGAGCTGAAGGA-TGTAGCTGCGGCCAAA-GTGAAAAAGATCACCGCGGAGC 517 Query 490 TTCAGACAGGTACT--TCATCCGACAAGAAAG-CTTTCGACCCCGTCGAAAC-CATTAAG 545 |||||||| || || || |||||||| ||| ||||||| ||||||| ||| |||||| Sbjct 518 TTCAGACA-GT-CTCGTCGTCCGACAA-CAAGTCTTTCGATCCCGTCG-AACGAATTAAG 573 Query 546 CAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAG 605 | |||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 574 GAAGGCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAG 633 Query 606 CTCGC-AAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCACGTGTGTG 664 ||||| ||| |||||||| || ||||||||||||||||||||||| ||||| || ||||| Sbjct 634 CTCGCTAAA-GGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTG 692 Query 665 TCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAA 724 |||||||| || || |||| || || ||||||||||||||||| ||||| || ||||| Sbjct 693 CCCATCACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAA 752 Query 725 CATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGC 784 |||||||||||||| |||||||||||||| | || |||||||| ||||||||||| || Sbjct 753 TATGGTTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGC 812 Query 785 GGTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGAT 844 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 813 TGTCTTGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCAT 872 Query 845 CAAAGGGCTTATGTC-TTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACT 903 ||| ||||||||||| ||||| ||| || ||||||||||| ||||| ||||||||||| | Sbjct 873 CAAGGGGCTTATGTCATTTCCTCTT-GACGGAAACAACTCTACTGATTTCATAGAGGATT 931 Query 904 GGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGA-TTCAGCC 962 |||| ||||||||||||||||| |||||||| ||| | ||||| | || | |||||| Sbjct 932 GGGTGAAAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGT-GAAAGTTCAGCA 990 Query 963 TTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAAACCTA 1022 ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 991 TTTGAGGACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTA 1050 Query 1023 TTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGC 1082 ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 1051 TTGACATATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGC 1110 Query 1083 TACTATGACTTCGTCAAGGG-TGCTTTTGAGCTTTGGGGACT 1123 |||||||| || || || || | |||| |||||||||| ||| Sbjct 1111 TACTATGATTTTGTTAATGGCTCCTTT-GAGCTTTGGGAACT 1151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49331054598 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5