BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01590.2
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927599 jgi|Araly1|927599|scaffold_300056.1 1624 0.0
> Ahg927599 jgi|Araly1|927599|scaffold_300056.1
Length=964
Score = 1624 bits (879), Expect = 0.0
Identities = 936/964 (97%), Gaps = 1/964 (0%)
Strand=Plus/Plus
Query 337 GTGAGCTTGTGGCCAAAAAAGGGATGCCTTTGAACTTAGGCAACGATGGCGATGGGTCTT 396
|||||||| | ||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2 GTGAGCTTCTCGCC-AAAAAGGGATGCCTTTGAACTTAGGCAACGATGGCGATGGATCGT 60
Query 397 CCCGGATTATTTTGACTGAGCCTCGCGGATCTACTGCTGAGGTGCTTCTATTTGGAGGAC 456
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CCCGGATTATTTTGACTGAGCCTCGCGGATCAACTGCTGAGGTGCTTCTATTTGGAGGAC 120
Query 457 AAGTCATTTCTTGGAAAAATGAAAGGAGGGAAGAACTGCTTTATATGAGCAGCAAGGCTC 516
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AAGTCATTTCTTGGAAAAACGAAAGGAGGGAAGAACTGCTTTATATGAGCACCAAGGCTC 180
Query 517 AATATAAGCCACCCAAGGCGATCAGAGGAGGAATACCTGTTTGCTTTCCACAGTTTGGAA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATATAAGCCACCCAAGGCGATCAGAGGAGGAATACCTGTTTGCTTTCCACAGTTTGGAA 240
Query 577 ACTTTGGTGGACTTGAGCGACATGGATTTGCCCGGAACAAATTCTGGTCACATGATGAAG 636
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 241 ACTTTGGTGGACTTGAGCGACATGGATTTGTCCGGAACAAATTCTGGTCATATGATGAAG 300
Query 637 ATCCTTCGCCTCTACCTCCTGCTAACAAACAATCATCTGTTGATCTGATATTGAAGTCCA 696
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 301 ATCCTTCGCCTCTTCCTCCTGCTAACAAACAGTCATCAGTTGATCTGATATTGAAGTCCA 360
Query 697 CAGAAGATGACTTGAAGACCTGGCCGCATAGTTTTGAACTCCGTATTCGCATTTCTATTA 756
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 361 CAGAAGATGACTTAAAGACCTGGCCGCATATTTTTGAACTCCGTATTCGAATTTCTATTA 420
Query 757 GCCCTGGGAAGCTTACTTTGATCCCTCGTGTGAGGAACATTGACTCAAAGGCATTCTCCT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCCCTGGGAAGCTTACTTTGATCCCTCGTGTGAGGAACATTGACTCAAAGGCATTCTCCT 480
Query 817 TTATGTTTGCACTGCGAAACTACTTATATGTATCTGACATAAGTGAAGTTCGAGTTGAGG 876
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 TCATGTTTGCACTGCGAAACTACTTATATGTATCTGACATAAGTGAAGTACGAGTTGAGG 540
Query 877 GTTTGGAGACACTGGATTATCTAGACAACTTGATTGGTAAAGAAAGATTCACTGAGCAAG 936
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 GTTTGGAGACACTGGATTATCTAGACAACTTGATTGGTAAAGAAAGATTCACCGAGCAAG 600
Query 937 CAGACGCGATTACCTTTGACGGGGAGGTCGATAGAGTGTACTTGAACACACCAACAAAGA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGACGCGATTACCTTTGACGGGGAGGTCGATAGAGTGTACTTGAACACACCAACAAAGA 660
Query 997 TTGCGGTCATAGATCATGAGCGAAAGAGGACCATCGAGTTGCGAAAGGAAGGCATGCCCA 1056
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 TTGCGGTCATAGATCATGAGCGAAAGAGGACCATAGAGTTGCGAAAGGAAGGCATGCCCA 720
Query 1057 ATGCAGTTGTGTGGAACCCCTGGGACAAAAAGGCAAAGACCATAGCTGATATGGGAGATG 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGCAGTTGTGTGGAACCCCTGGGACAAAAAGGCAAAGACCATAGCTGATATGGGAGATG 780
Query 1117 AAGATTACAAAACAATGCTTTGTGTAGATTCTGGAGTAATCGAACCTCTGGTATTGTTAA 1176
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 781 AAGATTACAAAACAATGCTGTGTGTAGATTCTGGAGTAATCGAACCTCCGGTATTGTTAA 840
Query 1177 AGCCTCGTGAAGAGTGGAAAGGCAGACAAGAACTATCCATCGTCTCATCAAGTTACTGCA 1236
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 841 AGCCACGTGAAGAGTGGAAAGGCAGACAAGAACTCTCCATAGTCTCATCAAGTTACTGCA 900
Query 1237 GCGGACAGCTTGATCCACGCAAGGTTCTTTACGGAGATATCTGATCCTTTTGGGGGTTTA 1296
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 901 GCGGACAGCTTGATCCACGCAAGGTTCTTTACGGAGATAACTGATACTTTTGGGGGATTA 960
Query 1297 TCTT 1300
||||
Sbjct 961 TCTT 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5