BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01640.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477351 jgi|Araly1|477351|fgenesh2_kg.3__52__AT3G01640.1 1917 0.0
Ahg325917 jgi|Araly1|325917|fgenesh1_pm.C_scaffold_6001137 922 0.0
> Ahg477351 jgi|Araly1|477351|fgenesh2_kg.3__52__AT3G01640.1
Length=1191
Score = 1917 bits (1038), Expect = 0.0
Identities = 1140/1191 (96%), Gaps = 0/1191 (0%)
Strand=Plus/Plus
Query 1 aaaaaaagaaagtaaaaaaCGCGTCAGGGAAGAGAAGATGGATCCGAATTCCACGGTTTC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAAAGAAAGTAAAAAACGCGTCAGGGAAGAGAAGATGGATCCGAATTCCACGGTTTC 60
Query 61 CGGCGATGGTCAGGCGACGGCGGCGATAGAGCATCGGTCCTTCGCTCGGATCGGATTTCT 120
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CGGCGAGGGCCAGGCTTTGGCGGCGATAGAGCATCGGTCCTTCGCTCGGATCGGATTCCT 120
Query 121 CGGAAACCCGAGCGATGTATACTTCGGGCGAACCATATCATTGACCATCGGAAACTTCTG 180
|||||| ||||||||||| ||||||||||| || ||||||||||||||||| || |||||
Sbjct 121 CGGAAATCCGAGCGATGTTTACTTCGGGCGTACAATATCATTGACCATCGGTAATTTCTG 180
Query 181 GGCATCCGTGAAGCTGGAGCCATCGGAGCATCTCGTAATCAAGCCTCATCCATTCCATGA 240
||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 181 GGCCTCCGTGAAGCTGGAGCCGTCGCAGCATCTCGTAATCAAGCCGCATCCATTCCATGA 240
Query 241 TCTCGTCCAGTTCACCTCTCTCGACCATCTCCTGAATCGTTTGCAAAATGAAGGATACTA 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 241 TCTCGTCCAGTTCACCTCTCTCGACCATCTCCTGCATCGTTTGCAAAATGAAGGTTACTA 300
Query 301 CGGTGGGGTAAGGTTGCTAATGGCGATATGTAAAGTATTCCGTAACTATTGCAAAGAGAA 360
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 301 CGGTGGTGTAAGGTTGCTAATGGCGATATGTAAAGTGTTCCGTAACTACTGCAAAGACAA 360
Query 361 TGACATTCAACTTCACCAAGCCAACTTCTCTCTTTCTTATGATACCAATATCCCTAGGCA 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGACATTCAACTTCACCAAGGCAACTTCTCTCTTTCTTATGATACCAATATCCCTAGGCA 420
Query 421 GACAGGGCTTTCGGGTTCTAGTGCCATCGTATCCGCTGCCCTTAACTGCCTTCTCGACTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACAGGGCTTTCGGGTTCTAGTGCCATCGTATCCGCTGCCCTTAACTGCCTTCTCGACTT 480
Query 481 CTACAATGTCAGGCATTTGATCAAAGTACAAGTCCGCCCTAACATTGTTCTCAGTGCTGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 CTACAATGTCAGGCATTTGATCAAAGTACAAGTCCGCCCTAACATTGTTCTCAGTGCAGA 540
Query 541 GAAAGAACTTGGCATTGTTGCTGGTCTTCAGGACAGGGTTGCTCAGGTCTATGGTGGTCT 600
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GAAAGAACTTGGTATTGTTGCTGGTCTTCAAGACAGGGTTGCTCAGGTCTATGGTGGTCT 600
Query 601 TGTTCACATGGATTTTAGCAAGGAGCACATGGATAAATTGGGGCATGGGATTTACACTCC 660
|||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct 601 TGTTCACATGGATTTTAGTAAGGAGCACATGGACAAATTGGGACATGGGATTTATACTCC 660
Query 661 TATGGATATCAGTCTCCTCCCTCCTCTGCATCTCATCTATGCTGAGAATCCGAGCGACTC 720
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 661 TATGGATATCAGTCTCCTCCCTCCTTTGCATCTCATCTATGCTGAGAATCCTAGCGACTC 720
Query 721 AGGGAAGGTACATAGTATGGTTCGGCAAAGATGGTTAGACGGTGATGAGTTTATAATCTC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGGAAGGTACATAGTATGGTTCGGCAAAGATGGTTAGACGGTGATGAGTTTATAATCTC 780
Query 781 ATCAATGAAAGAAGTCGGAAGTCTAGCAGAAGAAGGTCGAACTGCATTACTCAACAAGGA 840
||||||||||||||| |||| | |||||||||||||||| ||||||||||| ||||||||
Sbjct 781 ATCAATGAAAGAAGTTGGAAATATAGCAGAAGAAGGTCGCACTGCATTACTTAACAAGGA 840
Query 841 CCATTCCAAACTTGTGGAACTCATGAACCTTAATTTCGACATTCGGAGGCGGATGTTTGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCATTCCAAACTTGTGGAACTCATGAACCTTAATTTCGACATTCGGAGGCGGATGTTTGG 900
Query 901 GGATGAATGCTTAGGAGCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGTGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 GGATGAATGCTTAGGAGCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGGGC 960
Query 961 AGCCTCAAAGTTCACTGGAAGTGGAGGAGCAGTGGTGGTTTTCTGCCCTGAAGGTCCATC 1020
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 961 AGCTTCAAAGTTCACTGGAAGTGGAGGAGCGGTGGTGGTTTTCTGCCCTGAAGGTCCGTC 1020
Query 1021 TCAGGTGAAACTTCTGGAAGAAGAATGCAGGAAAGCGGGATTTACGCTTCAGCCGGTAAA 1080
||||||||| |||||||||||||||||| ||||| | ||||||| |||||||||||||||
Sbjct 1021 TCAGGTGAAGCTTCTGGAAGAAGAATGCCGGAAATCAGGATTTATGCTTCAGCCGGTAAA 1080
Query 1081 AATTGCGCCTTCATGTTTGAATGATTCTGACATTCAGACCTTATGAAAGCCTTGATCAAG 1140
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 AATCGCCCCTTCATGTTTGAATGATTCTGACATTCAGACCTTATGAAAGCCATGATCAAG 1140
Query 1141 TCTTCTTATTCACACGATAGAGCCATTTTCCAGAGAAATAAACATGTGAGC 1191
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCTTGTTATTCACACGATAGAGCCATTTTCCAGAGAAATAAACATGTGAGC 1191
> Ahg325917 jgi|Araly1|325917|fgenesh1_pm.C_scaffold_6001137
Length=1101
Score = 922 bits (499), Expect = 0.0
Identities = 880/1063 (83%), Gaps = 29/1063 (3%)
Strand=Plus/Plus
Query 89 GAGCATCGGTCCTTCGCTCGGATCGGATTTCTCGGAAACCCGAGCGATGTATACTTCGGG 148
|||||||| || |||||| | ||||| ||||| |||||||| ||||| || ||||||||
Sbjct 52 GAGCATCGTTCGTTCGCTAGAATCGGGTTTCTGGGAAACCCTAGCGACGTTTACTTCGGT 111
Query 149 CGAACCATATCATTGACCATCGGAAACTTCTGGGCATCCG-TGAAGCTGGAGCCATCGGA 207
|| || || ||||| ||||| || || |||||||| | | | ||||| || ||||| ||
Sbjct 112 CGTACGATTTCATTTACCATTGGTAATTTCTGGGCTTGGGCT-AAGCTCGAACCATCCGA 170
Query 208 GCATCTCGTAATCAAGCCTCATCCATTCCATGATCTCGTCCAGTTC-ACCTCTCTCGACC 266
||||| | ||||| |||||||||||||||||||| ||||||||| | |||||||||
Sbjct 171 TCATCTTTTGATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGA-TTCTCTCGACA 229
Query 267 ATCTCCTGAATCGTTTGCAAAATGAAGGATACTACGGTGGGGTAAGGTTGCTAATGGCGA 326
||||| | |||| ||| ||||||| ||||||||||| || |||||||||||||||||||
Sbjct 230 ATCTCGTTTATCGATTGGAAAATGATGGATACTACGGAGGTGTAAGGTTGCTAATGGCGA 289
Query 327 TATGTAAAGTATTCCGTAACTATTGCAAAGAGAATGACATTCAACTTCACCAAGCCAACT 386
| || ||||||||||| |||||||||||||| |||| ||| |||||||| || ||||
Sbjct 290 TTTGCAAAGTATTCCGCAACTATTGCAAAGATAATGGCATACAACTTCATGAAAAAAACT 349
Query 387 TCTCTCTTTCTTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTGCCA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TCTCTCTTTCTTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTGCCA 409
Query 447 TCGTATCCGCTGCCCTTAACTGCCTTCTCGACTTCTACAATGTCAGGCATTTGATCA-AA 505
| ||||| ||||| |||| |||||||||||||||||||||||||||||| | |||| ||
Sbjct 410 TTGTATCTGCTGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCAGAA 469
Query 506 GTAC-AAGTCCGCCCTAACATTGTTCTCAGTGCTGAGAAAGAACTTGGCATTGTTGCTGG 564
| | ||||||| |||||| || |||||| ||| |||||||||||||| |||||||||||
Sbjct 470 -T-CGAAGTCCGACCTAACCTTATTCTCAATGCGGAGAAAGAACTTGGTATTGTTGCTGG 527
Query 565 TCTTCAGGACAGGGTTGCTCAGGTCTATGGTGGT---CTTGTTCACATGGATTTTAGCAA 621
|||||| ||| | |||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct 528 TCTTCAAGACCGTGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAGTAA 587
Query 622 GGAGCACATGGATAAA-TTGGGGCATGGGATTTACACTCCTA-TGGATATCAGTCTCCTC 679
|| || ||||||||| |||| ||||||| |||||| || ||||||||| ||| ||
Sbjct 588 AGAACATATGGATAAAGTTGGAT-ATGGGATATACACTA-TAATGGATATCAATCTTCTT 645
Query 680 CCTCCTCTGCATCTCATCTATGCTGAGAATCCGAGCGACTCAGGGAAGGTACATAGTATG 739
|||||||||||||| ||||||||||||||||| || ||||| || ||||||||||| | |
Sbjct 646 CCTCCTCTGCATCTAATCTATGCTGAGAATCCAAGTGACTCTGGCAAGGTACATAGCACG 705
Query 740 GTTCGGCA-AAGATGGTTAGACGGTGATGAGTTTATAATCTCATCAATGAAAGAAGTCGG 798
||||| | ||| |||||||| ||||||||||| ||||| ||||||||| |||| | |
Sbjct 706 GTTCGT-AGAAGGTGGTTAGATGGTGATGAGTTCATAATATCATCAATGGCAGAAATTGC 764
Query 799 AAG-TCTAGCAGAAGAAGGTCGAACTGCATTACTCAACAAGGACCATTCCAAACTTGTGG 857
|| | |||| ||||||||||||||||||||||| || || || | |||||||| ||
Sbjct 765 AAAAT-TAGCTGAAGAAGGTCGAACTGCATTACTTAAAAAAGATTACTCCAAACTCAAGG 823
Query 858 AACTCATGAACCTTAATTTCGA-CATTCGGAGGCGGATGTTTGGGGATGAATGCTTAGGA 916
|||||||||||| ||| ||||| | |||| ||| | |||||||| |||||||| || |||
Sbjct 824 AACTCATGAACCGTAACTTCGATC-TTCGAAGGAGTATGTTTGGAGATGAATGTTTGGGA 882
Query 917 GCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGTGCAGCCT-CAAAGTTCAC 975
|| ||||||||||| ||||||||||| || | | | | || ||||| | ||||||||||
Sbjct 883 GCTATGAACATAGAAATGGTGGAAGTGGCTCGTAAGATCGGAGCAGC-TGCAAAGTTCAC 941
Query 976 TGGAAGTGGAGGAGCAGTGGTGGTTTTCTGCCCTGAAGGTCCATCTCAGGTGAAACTTCT 1035
|||||| ||||| || ||||| ||||||||||| || || ||||||||||| ||||| ||
Sbjct 942 TGGAAGCGGAGGGGCTGTGGTTGTTTTCTGCCCCGATGGACCATCTCAGGTCAAACTCCT 1001
Query 1036 GGAAGAAGAATG-CAGGAAAGCGGGATTTAC-GCTTCAGCCGGTAAAAATTGCGCCTTCA 1093
||||||||||| | | ||| | ||||||| | || |||| ||||| ||| |||| ||
Sbjct 1002 CGAAGAAGAATGTC-GAAAATCTGGATTTATAG-TTGAGCCAGTAAAGCTTGTGCCTACA 1059
Query 1094 TGTTTGAATGATTCTGA-CATTCAGACCTTATGAAAGCCTTGA 1135
| | ||| ||||||| | || |||| |||| ||| || |||
Sbjct 1060 CGCCTCAATAATTCTGATC-TTAAGACTTTATCAAAACCATGA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5