BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01670.1
Length=2732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477348 jgi|Araly1|477348|fgenesh2_kg.3__49__AT3G01670.1 4170 0.0
> Ahg477348 jgi|Araly1|477348|fgenesh2_kg.3__49__AT3G01670.1
Length=2717
Score = 4170 bits (2258), Expect = 0.0
Identities = 2573/2725 (94%), Gaps = 22/2725 (1%)
Strand=Plus/Plus
Query 1 ATTCATCACAACACATCAGATCCTTCACCATATATTTCTC-TCAACCTCGCCAATATGGC 59
||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1 ATTCACCACAACACATCAGATCCTTCACCATATATTTCTCTTC-TTTTCGCCAATATGGC 59
Query 60 CCAACGCTTTCAATTGAACTCACAAACCCTCCCAACGGCCGACCCTCTCAAAAGGGTCTC 119
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 60 CCAACGCTTTCAATTGAACCCAAAAACCCTCCCAACGGCCGACCCTCTCAAAAGGGTCTC 119
Query 120 CCTTATTCCAAGATCCGCCGAGCAGAGGCTGGCTGATAACGCAGGCGAGAGGCGTCCTTT 179
|||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||| ||
Sbjct 120 CCTTATCCCAAGATCCGCCGAGCAGAATCTGGCTGATAACTCAGGCGATAGGCGTCCCTT 179
Query 180 AGCACCGAGATCTCACGAAGACAACCCCTTTGGGGGTCATACTGATGATCACCATGTTGC 239
|||||||||| |||||||||||| ||||||||||| |||||| ||||||||| ||||| |
Sbjct 180 AGCACCGAGAACTCACGAAGACAGCCCCTTTGGGGATCATACAGATGATCACAATGTTTC 239
Query 240 TGCTCCTGCGGACCATAATAAGGTGATGGATCATAATAGCGAGAATCTCGGTTCCATTGT 299
|||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||
Sbjct 240 TGCTCCTGCGGACCATAATAAGGTGATGGATCATGAGACCGAGAAGCTCGGTTCCATTGT 299
Query 300 CCCTAAGACTGCACATTACCCTCATCCATCTGAGGAAATCCTTGATGCTAATATCCGACA 359
||||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 300 CCCTAAGACTGCAAATCACCCTCATCCATCTGAGGACGTACTTGATGCTAATATCCGACA 359
Query 360 TTCGATGGTTCCGAAATCATTGGGTCC-CAATTCGCTCGGTGGAAGATTTGGTCCGGGAA 418
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 360 TTCGATGGTTCCAAAATCATTGGG-CCATAATTCGCTCGGTGGAAGATTTGGTCCGGGCA 418
Query 419 AGAAACAAGCTTTCCATAGAAATGGCAGACCCATGTTTTCACTTTCTGATGACCGAGTCA 478
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 GGAAACAAGCTTTCCATAGAAATGGCAGACCTATGTTTTCACTTTCTGATGACCGAGTCA 478
Query 479 TGGCTGATAGAGTCTTGAAGACTCACAGTCCAGACATGATCTTCTTTGATGTCACATCAC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 TGGCTGATAGAGTCTTGAAGACTCACAGTCCAGACATGATCTTCTTTGATGTCAAATCAC 538
Query 539 TTCTCTCCGTTGTTAATGACATCTTCAAGTCTCATGTCCCATCCATTGACTCCTCTGCTC 598
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCTCTCCGTTGTTGATGACATCTTCAAGTCTCATGTCCCATCCATTGACTCCTCTGCTC 598
Query 599 CTAAGCCATCACTCGTCTTCAAGGACTACGCTGATCATACCTCCTTTGAAACTTTTGCGG 658
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 599 CTAAGCCATCACTCGTGTTCAAGGACTATGCTGATCATACCTCCTTTGAAACTTTCGCGG 658
Query 659 ATCTCATTGATCAAATCTCTTGCGAGATCGACTGCAAGTGTCTCCATGGCGGTGAGTCTC 718
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATATCATTGATCAAATCTCTTGCGAGATCGACTGCAAGTGTCTCCATGGCGGTGAGTCTC 718
Query 719 ACGGTATGATGACATCAGGGCTTCATTTGGATAGTCGCAACACGACGACGTTCTCTGTTC 778
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 719 ACGGTATGATGACATCAGGGCTTCATTTAGATAGTCGCAATACCACGACGTTCTCTGTTC 778
Query 779 TGTCTTTGGTCTCCAAATACCGTTGGGATGCTAAGCTAGTCCTTGTCCTATCTGCTTTGG 838
||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 779 TGTCTCTGGTCTCTAAATATCGTTGGGATGCTAAGCTAGTCCTTGTCCTAGCTGCCTTGG 838
Query 839 CCGTGAAATACGGCGTTTTTCTCCTCCTCGCGGAGACACACGCAACAAATCAGCTCACAA 898
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 839 CCGTGAAATACGGCGTTTTTCTCCTCCTCGCGGAGACACACGCAACTAATCAGCTCACTA 898
Query 899 AATCTCTGGCTCTCATCAAACAGCTCCCTAGCATCTTCTCCCGGCAGAACGCTCTACACC 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 AATCGCTGGCTCTCATCAAACAGCTCCCTAGCATCTTCTCCCGGCAGAACGCTCTGCACC 958
Query 959 AGCGTCTCGACAAGACCCGAATTCTGATGCAAGACATGGTTGATCTCACCACTACCATCA 1018
||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 959 AGCGTCTTGACAAGACCCGAATTCTGATGAAAGAAATGGTTGATCTCACCACTACCATCA 1018
Query 1019 TCGATATCTATCAACTCCCGCCAAACCACATCACAGCCGCGTTTACCGACCATATCCCCA 1078
|| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1019 TCCAGATCTATCAACTCCCGCCAAACCACATCACAACCGCGTTTACCGACCATGTCCCCA 1078
Query 1079 CTGCGGTTTACTGGATTGTTCGCTGTGTTTTGATATGTGTTTCTCACATCAGTGGCGCCA 1138
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 CTGCGGTTTACTGGATTGTTCGCTGCGTTTTGATATGTGTTTCTCACATCAGTGGCGCCA 1138
Query 1139 GTGGTTTCAAGCAGGATCAAATCATGTCGTTTATGGAAGTTTCGGAGATACATGAGAATA 1198
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 GTGGTTTCAAGCAGGATCAAATCATGTCGTTTATGGAAGTTTCGGAGATTCATGAGAATA 1198
Query 1199 GCGAAAGGCTTAGGAAGATCAATGCTTACTTGTTAGAACAATTCAAGAAGAGTAAAATGA 1258
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||
Sbjct 1199 GCGAAAGGCTTAGGAAGATCAATGCTTACTTGATAGAACAACTCAAGAAGAGTCAATTGA 1258
Query 1259 CCATCGAGGAAGGTATAATCGAAGAAGAGTATCAAGAACTCATCCAGACGTTCACTACTA 1318
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1259 CCATTGAGGATGGTATAATCGAAGAAGAGTATCAAGAACTCATTCAGACGTTCACTACTA 1318
Query 1319 TCATTCACGTCGACGTTGTTCCTCCTCTACTTCGTCTTCTCAGACCCATTGATTTTCTTT 1378
|||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1319 TCATTCACGTTGACGTTGTTCCTCCTCTGCTTCGCCTTCTCAGACCTATTGATTTTCTTT 1378
Query 1379 ACCACGGAGCTGGTGTTTCAAAGAGACGCGTCGGGATCAACGTGCTCACCCAAAAGCACG 1438
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 ACCACGGAGCTGGTGTTTCAAAGAGACGTGTCGGGATCAACGTGCTCACCCAAAAGCACG 1438
Query 1439 TTCTGCTTCTGATATCAGACCTAGAAAACATCGAAAAAGAGCTCTACATCCTGGAATCGC 1498
| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 TGCTGCTTCTGGTATCAGACCTAGAAAACATCGAAAAGGAGCTCTACATCCTGGAATCGC 1498
Query 1499 TCTACACAGAAGCATGGCAGCAGTCATTCGAGATTCTTTGGGTTCCAGTTCAAGATTTCT 1558
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1499 TCTACACAGAAGCATGGCAGCAATCATTCGAGATTCTATGGGTTCCAGTTCAAGACTTCA 1558
Query 1559 GGACAGAAGCTGACGATGCCAAGTTCGAGGCCCTTCACATGAACATGAGGTGGTACGTTC 1618
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 1559 GGACAGAAGCTGACGATGCCAAGTTCGAGGCACTTCATATGAATATGAGGTGGTACGTTC 1618
Query 1619 TTGGAGAGCCTCGGAAATTAAGACGAGCCGCGATAAGGTTTGTGAGGGAATGGTGGGGTT 1678
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |
Sbjct 1619 TTGGAGAGCCTCGGAAATTAAGACGAGCCGCCATTAGGTTTGTGAGGGAGTGGTGGGGGT 1678
Query 1679 TCAAGAACAGGCCTATACTCGTTGCACTTGATCCCAAAGGTCAAGTTATGTCAACCAACG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCAAGAACAGGCCTATACTCGTTGCACTTGATCCCAAAGGTCAAGTTATGTCAACCAACG 1738
Query 1739 CCTTT-CCTATGGTCTGGATCTGGCAACCCTTTGCTCACCCTTTTACCACCGCAAGGGAA 1797
|||| ||||||||||||||||||||||||||||| |||||||| || ||| ||||||||
Sbjct 1739 -CTTTCCCTATGGTCTGGATCTGGCAACCCTTTGCGCACCCTTTCACGACCTCAAGGGAA 1797
Query 1798 CGTGATCTATGGAGCGAACAGGAGTGGAATCTTGAGTTCTTGATTGATGGCACTGATCCT 1857
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1798 CGTGATCTATGGAGCGAACAGGATTGGAATCTTGAGTTCTTAATTGATGGAACTGATCCT 1857
Query 1858 CATTCCTTAAACCAGCTTGTTGATGGAAAATACATATGTCTCTACGGAGGAGAAGATATG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1858 CATTCCTTAAACCAGCTTGTTGATGGAAAATACATATGTCTCTACGGAGGAGAGGATCTG 1917
Query 1918 CAATGGATCAAAAACTTCACGAGTCTCTGGCGTAATGTAGCGAAGGCCGCAAACATTCAA 1977
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1918 CAGTGGATCAAAAACTTCACGAGTCTCTGGCGTAACGTAGCGAAGGCCGCAAATATTCAA 1977
Query 1978 CTTGAGATGGTTTATGTCGGGAAAAGAAACCCTAAGAATGGAATCCAGCCGATAATCAAC 2037
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 CTAGAGATGGTTTATGTCGGGAAAAGAAACCCTAAGAATGGAATCCAGCCGATAATCAAC 2037
Query 2038 ACAATCCGGGAGGAAAATC-TCAGCCATACTTTGCCGGACTTGTTCCAGATCTGGTTTTT 2096
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 2038 ACAATCCGGGAGGAAAA-CATCAGCCATACGTTGCCGGACTTGTTCCAGATCTGGTTTTT 2096
Query 2097 CTGGACCAGGGTCGAGAGCATGTGGGAATCGAAGCAGAGGATGCTGAAAGCCCACGGAAT 2156
|||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2097 CTGGACGAGGATCGAGAGCATGTGGGAATCGAAGCAGAGGATGCTGAAAGCCCGCGGAAT 2156
Query 2157 CAAGGGGAGAGAAGGGTTTAAAGAAGAGGAAAAGGACCTTGTTCTGCAAGAAGTGGTTGC 2216
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2157 CAAGGGGAGAGAAGGATTTAAAGAAGAGGAAAAGGACCTTGTTCTGCATGAAGTGGTTGC 2216
Query 2217 TATGTTAGGTTATGGAGGAGAAGGAGATGGATGGGGACTGGTGAGTAAAGCATCGGACAT 2276
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2217 TATGTTGGGTTATGGAGGAGAAGGAGATGGATGGGGACTGGTGAGTAAAGCATCGGACTT 2276
Query 2277 GATGGTTCGAGCCAAAGGGAACTTGTTTTCTAGGGGTTTGGCTGAATTTAACGAATGGGA 2336
|||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||
Sbjct 2277 GATGGTTCGAGCCAAAGGGAACTTGTTTTCGAGGGGTTTGTCTGAGTTCAACGAATGGGA 2336
Query 2337 AGTCAACATCCCCACAAAGGGTTTTCTTACAGCGCTCAATGATCATCTCTTAATGCGTCT 2396
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337 AGTCAACATTCCCACAAAGGGTTTTCTTACAGCGCTCAATGATCATCTCTTAATGCGTCT 2396
Query 2397 CCCACCACATCACTGCACAAGGTTCATGCTTCCTGAGACTGCTGGAATTATACCTAATGA 2456
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2397 CCCACCACATCACTGCACAAGGTTCATGCTTCCTGAGACTGCTGGGATTATACCCAATGA 2456
Query 2457 GGTTGAGTGCACCGAGTGCCGTAGGACTATGGAAAAGTATTACTTGTACCAATGCTGCCT 2516
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2457 GGTCGAGTGCACCGAGTGCCGTAGAACCATGGAAAAGTATTACTTGTACCAATGCTGCCT 2516
Query 2517 TGAGTAAGATCCCATAATACTGGGGAAC-AAGTTG---ATTTGGAAGCCAACAACTTGTT 2572
|||||||||||||| |||| |||| ||| |||| | |||||||||||| || ||||||
Sbjct 2517 TGAGTAAGATCCCAGAATATTGGG-AACCAAGTAGGGTATTTGGAAGCCATCAGCTTGTT 2575
Query 2573 CCTATAAAACCAAATAAGTTTGCGTCttttttttCCTC-CTT-GTTGTGAGTTTCTCTAC 2630
|| ||| ||||||||||||||||||||||||||| || ||| ||||||| |||||||||
Sbjct 2576 CCAATACAACCAAATAAGTTTGCGTCTTTTTTTTTTTCTCTTTGTTGTGAATTTCTCTAC 2635
Query 2631 TCTTCATGTTGTTGTTGTTGTTCTGCTCTACTAAAAGCAGAGAGTCTTTGTAATAAAA-- 2688
||||| | | |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2636 TCTTCTTCATATTGTTGTTGTTCTGCTCTACTAAA-GCAGAG--TCTTTGTAATAAAAAA 2692
Query 2689 --TTTGTGTGTTTGAGATTTCGAAA 2711
|||||||||||||||||||||||
Sbjct 2693 AATTTGTGTGTTTGAGATTTCGAAA 2717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103072202970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5