BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01770.1 Length=2288 Score E Sequences producing significant alignments: (Bits) Value Ahg477338 jgi|Araly1|477338|fgenesh2_kg.3__39__AT3G01770.1 2828 0.0 > Ahg477338 jgi|Araly1|477338|fgenesh2_kg.3__39__AT3G01770.1 Length=2228 Score = 2828 bits (1531), Expect = 0.0 Identities = 1980/2187 (91%), Gaps = 69/2187 (3%) Strand=Plus/Plus Query 144 TCTGTTTCTGCTGGAGAAGATTTACGCTTGTTCCTCGGTTCTCTTACTTCTGCTCCGGTT 203 ||||| |||||| ||||||||||||||| | ||||||||||||| |||| ||| ||||| Sbjct 68 TCTGTCTCTGCTCCAGAAGATTTACGCTTCTGCCTCGGTTCTCTTGCTTCCGCTTCGGTT 127 Query 204 CGATCGCTTGCTAAGTGTTTCGAGTTGGTTCG---C-ACTTCGGTGGGCGATATCATGAC 259 |||||||||||| ||| |||||||| |||| | | | || |||||||| || ||||| Sbjct 128 CGATCGCTTGCTCAGTATTTCGAGTCGGTTAGTTCCGAATT-GGTGGGCG--AT-ATGAC 183 Query 260 TGTGAGGAACGGTGGTTTCCCAGGAGATTA-TAATCGTAACAGTTTTGACTCTCCCGGCG 318 |||||||||||||||||||||||||||||| | |||||| ||| |||||| |||| |||| Sbjct 184 TGTGAGGAACGGTGGTTTCCCAGGAGATTACT-ATCGTACCAGCTTTGACACTCCTGGCG 242 Query 319 GCTGTGATGATAGCCCCAATGCTTCCAAGGATGATGAAACTTTTGGTGTCCCGAGAATAG 378 |||||||||||||||| ||||||||| || |||||||||||||||||||||||||| | Sbjct 243 GCTGTGATGATAGCCCTAATGCTTCC---GAGGATGAAACTTTTGGTGTCCCGAGAATGG 299 Query 379 TTTTACCCTTGTCTGACTTGTCATCATCAGAAAGGAGAAAG-TGGATTCATACGCTTCGT 437 |||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||| Sbjct 300 TTTTACCCTTGTCTGACTTGTCATCATCGGAAAGGAAAAAGCT-GATTCATACGCTTCGT 358 Query 438 CAGGAGCTGGAACAACTACGGTCCTTTCAGAAGAGTGTTGGGGACCTTCTTCCTATATCT 497 ||||||||||||||| |||| ||||||||||||||| ||| ||| | |||||||| ||| Sbjct 359 CAGGAGCTGGAACAAATACGCTCCTTTCAGAAGAGTCTTGTGGA-C--CTTCCTATGTCT 415 Query 498 AAGATTGTTACTAGTACACCTG-CA--AGTAATGTGTCTCGCCCCAAGAGTTTTGGAATG 554 || |||| | |||||||| | | |||||||||||| |||||||||||| ||||| Sbjct 416 AACATTG----T--TACACCTGTGAGTAATAATGTGTCTCGACCCAAGAGTTTTAGAATG 469 Query 555 TCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTCACAGCAACCAAACCAGAG 614 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 470 GCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTTTCAGCAACCAAACCTGAG 529 Query 615 CCAGTCACCACTTCCACTATGCTTCGGATGAAGCAATGTGAGAGCCTCCTTAAACGATTG 674 |||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||||| Sbjct 530 CCAGTCACCACTTCTACAATGCTTCGGATGAAGCAATGTGAGACCCTCCTCAAACGATTG 589 Query 675 ATGTCGCAGCAGCATTGTTGGCTCTTTAATACCCCTGTGGACGTCGTCAAGCTCAACATT 734 ||||| || ||||| || |||||||||||||||||||| || || || |||||||||||| Sbjct 590 ATGTCCCAACAGCACTGCTGGCTCTTTAATACCCCTGTTGATGTGGTTAAGCTCAACATT 649 Query 735 CCTGATTATTTCACCATTATCAAACATCCTATGGATTTAGGAACTGTTAAA-AGCAAGTT 793 |||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||| Sbjct 650 CCTGATTATTTCACTATTATCAAACAGCCTATGGATTTAGGAACTG-TAAAGAGCAAGTT 708 Query 794 AACTTCCGGCACGTATTCAAGCCCTTCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 853 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 709 AACTTCCGGCACCTATTCAAGCCCATCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 768 Query 854 CAATGCTATGACTTATAACCCGTCAGATAATAATGTGTATCGCTTCGCTGATACTCTCAG 913 |||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 769 CAATGCAATGACATATAACCCGTCAGATAATAATGTTTATCGTTTCGCTGATACACTCAG 828 Query 914 CAAGTTTTTTGAAGTGAGATGGAAAACTATCGAGAAGAAGTCATCCGGAACCAAATCTGA 973 |||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| Sbjct 829 CAAGTTTTTTGAAGTGAGGTGGAAAACTTTTAATAAGAAGTCATCCGGAACCAAATCTGA 888 Query 974 ACCAAGTAACTTGGCTACTCTTGCTCACAAAGATATTGCGATACCTGAGCCTGTGGCTAA 1033 |||||||||||||| ||||| |||||||||||||||||| || ||||||||| ||||||| Sbjct 889 ACCAAGTAACTTGGGTACTCATGCTCACAAAGATATTGCAATGCCTGAGCCTCTGGCTAA 948 Query 1034 GAAGAGAAAGATGAATGCTGTGAAACGTAACAGCCTCTTAGAGCCTGCTAAGCGGGTTAT 1093 ||||||||||||||||||| | || | | |||||||||||||||||||||| |||||||| Sbjct 949 GAAGAGAAAGATGAATGCTCTCAACCATGACAGCCTCTTAGAGCCTGCTAAACGGGTTAT 1008 Query 1094 GACAGATGAGGATAGAGTAAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCTGT 1153 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1009 GACAGATGAGGATAGAGTTAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCGGT 1068 Query 1154 ACAGATAATAAATTTCCTGAGAGATCACAGCTCCAAGGAAGAGAGATCTGGAGATGATGA 1213 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1069 ACAGATAATAAATTTCCTGAGAGGTCACAGCTCCAAGGAAGGGAGATCTGGAGATGATGA 1128 Query 1214 GATAGAGATTGACATCAATGATCTCAGTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1273 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1129 GATAGAGATTGACATTAATGATCTCACTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1188 Query 1274 TGATGAGTTTCTGCGAGAAAATCAAAAGAAAGAT-TCAAACGGTGAACCCTGTGTGTTAG 1332 |||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||| Sbjct 1189 TGATGAGTTTTTGCGAGAAAATCAAAAGAAAGATGT-AAACGGTGAACCCTGTGAGTTAG 1247 Query 1333 AGCTTTTACATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTGTGATGGGAGTGAAT 1392 |||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||| Sbjct 1248 AGCTTTTAGATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTATGGTGGGAGCGAAA 1307 Query 1393 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTATATCTCACATCTCAACTG 1452 |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| Sbjct 1308 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTAGATCTCACATCCCATCTG 1367 Query 1453 TCAGAACAGAAAAAGATTCCGTCGGTGGATTGAATCAGATGGAAGATGCATCCAGAGGGA 1512 |||| |||||||||||||||||||| ||||| |||||| ||||||||||||||| |||| Sbjct 1368 TCAGGACAGAAAAAGATTCCGTCGGCGGATTAAATCAGCTGGAAGATGCATCCAAAGGG- 1426 Query 1513 AGCTAAGTCTTATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCAAAAGAGA 1572 || | || ||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1427 AG----G-CTAATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCGAATGAGA 1481 Query 1573 AGGAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAAATCGATTTGCGGATA 1632 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1482 AGCAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAGATCGATTTGCGGATA 1541 Query 1633 TAATCTTGAAGGCTCAAGAGATAACTCTTAATCAGAATGAGAAACGAGACCCAGAGACAC 1692 |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || Sbjct 1542 TAATCTTGAAGGCTAAAGAGATAACTCTTAATCAGAATGAGAAACGCGACCCAGAGAAAC 1601 Query 1693 TGCAACGTGAGAAGGAAGAACTGGAATTGCAAaagaagaaagaaaaagcacggttacaag 1752 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1602 TGCGACGTGAGAAGGAAGAACTCGAATTGCAAAAGAAGAAAGAAAAAGCACGGTTACAAG 1661 Query 1753 cagaagccaaggaagctgaagaagctcgtagaaaagCTGAGGCAC-A-----AG---A-G 1802 |||||||||||||||||||||||||| |||||||||||||||||| | || | | Sbjct 1662 CAGAAGCCAAGGAAGCTGAAGAAGCTTGTAGAAAAGCTGAGGCACGAGCTGCAGTTGAAG 1721 Query 1803 --GC---T-A----A-GAGGAAACTGGAACTTGAAAGAGAAGCAGCCCGGCAGGCATTGC 1851 || | | | |||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1722 CTGCGGCTGAGGCTAAGAGGAAACTGGAACTTGAAAGAAAAGCAGCACGGCAGGCATTGC 1781 Query 1852 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAAC 1911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1782 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAGC 1841 Query 1912 TGCTCAAAACGGTTAACACGGACCAGTTACGAAATCTAAGAGATGTTGGCTCTGAGTCTG 1971 |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 1842 TGCTTAAAACGGTTAACACGGACCAGTTAAGAAATCTAAGAGATGTTGGCTCTGACTCTG 1901 Query 1972 ATGGGTTGGCTGTATTTGGGTTTGGAGGAAGTAATCCTCTAGAGCAGCTGGGGCTATTTA 2031 ||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| Sbjct 1902 ATGGGTTGGAAGTTTTTGGGTTTGGAGGAAGCAATCCACTAGAGCAGCTGGGGCTCTTTA 1961 Query 2032 TGAAACATGAGGAGGATGAAGATGAATCCGACATGCTTGCGTTTCCAGATCCCGGCAATG 2091 |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| | Sbjct 1962 TGAAACATGATGAGGATGAAGATGAAGCCGACCTGCTTGCGTTTCCAGATCCCGGCAACG 2021 Query 2092 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGT-T-GTGTCTTGGATAACAGCA 2149 ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||| Sbjct 2022 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGTGTTGTGTCTTGGGTAATGGCA 2081 Query 2150 GTCAAGTGTACATGAGT--------TGTTGTAAAAAATGATAGTTAGATTGATATTTAAC 2201 ||| ||||||||||| | ||||||||||||| |||||| |||||||||||||| Sbjct 2082 GTCGAGTGTACATGAATCAGAGAGCTGTTGTAAAAAATAATAGTTGGATTGATATTTAAC 2141 Query 2202 CAATGCGATGGCATTTTATCCGAGTAAACAATCAATAACACTTTGTGTAGTGAGTA-AAA 2260 |||||||||||| |||||||||||||||||| || || |||||| | | |||||| ||| Sbjct 2142 CAATGCGATGGCTTTTTATCCGAGTAAACAAACACTAGCACTTTATCTCGTGAGTCTAAA 2201 Query 2261 TTTTGGTTAATTCAATAAACCAATGAC 2287 ||||| |||| |||||||||||||||| Sbjct 2202 TTTTGTTTAACTCAATAAACCAATGAC 2228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86160134190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5