BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01910.1
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927565 jgi|Araly1|927565|scaffold_300022.1 1995 0.0
> Ahg927565 jgi|Araly1|927565|scaffold_300022.1
Length=1227
Score = 1995 bits (1080), Expect = 0.0
Identities = 1164/1206 (97%), Gaps = 0/1206 (0%)
Strand=Plus/Plus
Query 154 AAGAATGCCTGGAATTAGAGGTCCTTCGGAATACTCGCAGGAACCACCTCGTCACCCTTC 213
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 22 AAGAATGCCTGGAATTCGAGGTCCTTCCGAGTACTCGCAGGAACCACCTCGTCACCCTTC 81
Query 214 TCTCAAGGTCAACGCCAAGGAACCTTTCAACGCCGAGCCTCCCCGCTCGGCCTTAGTCTC 273
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 82 TCTCAAGGTCAACGCCAAGGAACCTTTCAACGCTGAGCCTCCCCGCTCGGCCTTAGTCTC 141
Query 274 ATCTTATGTCACTCCCGTCGACCTTTTCTACAAGCGAAATCATGGTCCCATCCCCATTGT 333
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 142 ATCTTATGTCACTCCCGTCGACCTTTTCTACAAGCGAAATCATGGTCCCATACCCATTGT 201
Query 334 TGATCACCTTCAAAGCTACTCCGTCACCCTTACTGGATTGATCCAGAACCCGAGAAAGCT 393
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 202 TGATCATCTTCAAAGCTACTCCGTCACCCTTACTGGATTGATCCAGAACCCGACAAAGCT 261
Query 394 CTTTATCAAAGACATCAGGTCCCTCCCAAAGTACAATGTTACTGCTACTCTTCAGTGTGC 453
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 262 CTTTATCAAAGACATCAGGTCCCTCCCTAAGTACAATGTTACTGCTACTCTACAGTGTGC 321
Query 454 CGGTAACAGAAGGACTGCCATGAGCAAAGTTAGGAATGTTAGAGGTGTTGGATGGGATGT 513
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CGGTAACAGAAGAACTGCCATGAGCAAAGTTAGGAATGTTAGAGGTGTTGGATGGGATGT 381
Query 514 TTCTGCTATTGGCAACGCTGTCTGGGGTGGGGCGAAACTGGCCGATGTTCTTGAGCTTGT 573
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 382 TTCTGCTATTGGCAACGCTGTCTGGGGTGGGGCCAAATTGGCCGATGTTCTTGAGCTTGT 441
Query 574 GGGGATACCAAAGCTGACTGCTTCTACCAATTTAGGAGCCAGACATGTTGAGTTCGTTAG 633
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 442 GGGGATACCAAAGCTGTCTGCTTCTACCAATTTAGGTGGCAGACATGTTGAGTTCGTCAG 501
Query 634 TGTTGATCGCTGTAAGGAGGAAAATGGGGGCCCTTATAAGGCGTCAATCACTCTAAGTCA 693
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 502 TGTTGATCGCTGTAAGGAGGAAAATGGGGGCCCTTATAAGGCCTCAATCCCTCTAAGTCA 561
Query 694 AGCCACAAATCCTGAAGCGGATGTTCTACTCGCTTATGAGATGAATGGAGAGACCCTGAA 753
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGCCACTAATCCTGAAGCGGATGTTCTACTCGCTTATGAGATGAATGGAGAGACCCTGAA 621
Query 754 CAGGGATCACGGATTTCCGTTAAGGGTGGTTGTCCCTGGTGTGATTGGTGCTCGTTCGGT 813
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 622 CAGGGATCACGGATTTCCGTTAAGGGTGGTTGTCCCAGGTGTGATTGGTGCTCGTTCCGT 681
Query 814 CAAATGGCTTGATTCCATCAATGTCATCGCTGAAGAAAGCCAGGGATTCTTCATGCAAAA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CAAATGGCTTGATTCCATCAATGTCATCGCTGAAGAAAGCCAGGGATTCTTCATGCAAAA 741
Query 874 AGATTACAAAATGTTTCCACCCTCTGTCAATTGGGATAATATCAACTGGTCCTCTAGGAG 933
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 742 AGATTACAAAATGTTCCCACCCTCTGTCAATTGGGATAACATCAACTGGTCCTCAAGGAG 801
Query 934 ACCGCAAATGGATTTCCCTGTTCAGAGTGCAATCTGCTCTGTGGAGGATGTGCAAATGGT 993
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 802 ACCGCAAATGGATTTCCCTGTTCAGAGTGCAATCTGCTCTGTGGAGGACGTGCAAATGGT 861
Query 994 GAAGCCTGGAAAGGTAAGTATCAAAGGATATGCGGTTTCAGGAGGTGGACGCGGGATAGA 1053
|||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 862 GAAGCCTGGAAAGGTAAGCATCAAAGGATACGCTGTTTCAGGAGGTGGACGTGGGATAGA 921
Query 1054 AAGAGTGGACATATCCCTGGATGGAGGCAAAAACTGGGTGGAAGCTTCTAGAACGCAGGA 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 922 GCGAGTGGACATATCCCTGGATGGAGGCAAAAACTGGGTGGAAGCTTCTAGAACGCAGAA 981
Query 1114 ACCAGGAAAGCAGTACATCTCAGAACACAGCTCCAGTGACAAATGGGCATGGGTGTTGTT 1173
|||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 982 ACCAGGAAAGCATTACATCTCAGAACACAACTCCAGCGAAAAATGGGCATGGGTGTTGTT 1041
Query 1174 TGAAGCCACCATTGATGTTTCACAGACTACAGAGGTCATCGCCAAAGCGGTTGATTCGGC 1233
|||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1042 TGAAACCACCATTGATGTTTCACAGACTACGGAGGTCATCGCCAAAGCGGTCGATTCGGC 1101
Query 1234 GGCGAATGTTCAACCGGAAAATGTGGAGTCGGTGTGGAACCTAAGAGGGGTTCTCAACAC 1293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1102 GGCGAATGTTCAACCGGAAAATGTGGAGTCGGTGTGGAACCTAAGAGGGGTTCTAAACAC 1161
Query 1294 TTCGTGGCACCGTGTCCTTCTCCGGCTTGGCCACTCTAACTTGTAGACCAAGTTACCACT 1353
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TTCGTGGCACCGTGTACTTCTCCGGCTTGGCCACTCTAACTTGTAGACCAAGTTACCACT 1221
Query 1354 ATGCGT 1359
| ||||
Sbjct 1222 ACGCGT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58582796810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5