BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01980.3
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477315 jgi|Araly1|477315|fgenesh2_kg.3__16__AT3G01980.1 891 0.0
> Ahg477315 jgi|Araly1|477315|fgenesh2_kg.3__16__AT3G01980.1
Length=1227
Score = 891 bits (482), Expect = 0.0
Identities = 605/661 (92%), Gaps = 21/661 (3%)
Strand=Plus/Plus
Query 579 AGGAAAGGTGCAGGACATTCTTCAAGTCTCTCAAGATGAGTTCCACAGAATCACAAAGAT 638
||||||| |||||||| |||||||||| ||||||||||||||| |||| ||| |||||||
Sbjct 410 AGGAAAGATGCAGGACTTTCTTCAAGTTTCTCAAGATGAGTTCAACAGGATCTCAAAGAT 469
Query 639 CAATCTCACCGCTCCATGGTTTCTCTTGAAGGCTGTAGCCACAAGGATGAAGGACCATGG 698
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 470 CAATCTCACCGCTCCATGGTTTCTCTTGAAGGCTGTAGCCACAAGGATGAAAGACCATGG 529
Query 699 ATCAGGAGGCTCCATTGTCTTCATGGCCACTATCGCCAGCGGAGAGAGGGCGCTTTACCC 758
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 530 ATCAGGAGGCTCCATTGTCTTCATGGCCACTATCGCCAGCGGTGAGAGGGTGCTTTACCC 589
Query 759 TGGCGCTGATGCCTACGCTTCAACTTCTGCCGCTATTCACCAGCTCGTCCGGGCATCAGC 818
||| ||||||||||||||| | || ||||| || ||||| ||||| || |||||||||||
Sbjct 590 TGGAGCTGATGCCTACGCTACTACCTCTGCTGCCATTCATCAGCTTGTTCGGGCATCAGC 649
Query 819 CATGAGTCTCGGGAAGCACAAGATACGGGTCAACATGATCTCTAGAGGGCTGCATCTGGA 878
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CATGAGTCTAGGGAAGCACAAGATACGGGTCAACATGATCTCTAGAGGGCTGCATCTGGA 709
Query 879 TGATGAGTATACAGCTTCTGTGGGAAGAGACCGAGCGCAGAAGCTGGTCAAGGACGCTGC 938
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 710 AGATGAATATCCAGCTTCTGTCGGAAGAGACCGAGCGCAGAAGCTGGTCAAGGACGCTGC 769
Query 939 ACCCCTCGGCCAGTGGCTCAACCCGGACACAGACCTCTACTCCACTGTTATCTACTTGAT 998
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 770 ACCCCTCGGCCAGTGGCTCAACCCAGACACAGACCTCTACTCCACTGTTATTTACTTGAT 829
Query 999 CAGCGATGGCTCACGCTTCATGACAGGCACCACTGTCTTGGTGGATGGAGCGCAGTCCCT 1058
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CAGCGACGGCTCACGCTTCATGACAGGCACCACTGTCTTGGTGGATGGAGCGCAGTCCCT 889
Query 1059 TACGCGACCCCGTCTCAAATCCTACATGTGATCAATGCCTAGTATTATTATAATTCTATG 1118
||||||||||||||||||||||||||||||||||| | ||||||||| | | |||||||
Sbjct 890 TACGCGACCCCGTCTCAAATCCTACATGTGATCAACACATAGTATTAT-A-A-TTCTATG 946
Query 1119 TTGTGTGT----A----AAAA-GTGAATATGAATCAAGTTTGAATAACTATGGAGGGATG 1169
|||||||| | |||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 947 TTGTGTGTGTTTACTGTAAAAAGTGAACATGAATCAAGTTTGAATAACTTTGGAGGGATG 1006
Query 1170 AATAATCCAT-----G--G-AAT-CAATGATTATATACTTTTGACAAGTATAGAAGAAAG 1220
| |||||||| | | || ||||||||||||||||||||||| ||||||| ||||
Sbjct 1007 AGTAATCCATCCATCGAAGCAAAGCAATGATTATATACTTTTGACAAATATAGAAAAAAG 1066
Query 1221 C 1221
|
Sbjct 1067 C 1067
Score = 453 bits (245), Expect = 1e-126
Identities = 285/304 (94%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 190 TTTGGCAAAATGGAAAATCCGGCGAAGAGAGTGTTGATGACATCCAACGGCGACGAGGTG 249
||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 111 TTTGGGAAAATGGAAAATCCGGCCAAGAGAGTGTTGATGACATCCAACGGCGACCAGGTT 170
Query 250 TCCCGAAACATCGCTTTCCATCTAGCCAAACACGGTTGCAAGTTGGTAATGATGGGAAAT 309
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 171 TCCCGAAACATCGCTTTCCATCTAGCCAAACACGGTTGCAAGTTGGTACTGATGGGAAAT 230
Query 310 GAGGGTTCCCTAAGGAGCATTGTAGACAAGATTAGAGATTCCATTGAGGGAGCCTTCCCT 369
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GAGTCTTCTCTAAGGAGCATTGTAGACAAGATTAGAGATTCCATTGAGGGAGCCTTCCCT 290
Query 370 GCCGATGTTATAGCACTCGACATGGAATCTGACTCTGAAGTTGCTTTTCATGCCGCTGTC 429
|||||||| || |||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 291 GCCGATGTGATTGCACTCGACATGGAATCTGATTCTGAAGATGCTTTCCATGCCGCTGTC 350
Query 430 CAAAAGGCATGGGAACTT-T-CCGGCCATTTCGATGCTTTTCTCAACTCTTATACCTACC 487
|||||||||||| | ||| | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 351 CAAAAGGCATGG-A-CTTGTTCCGGCTATTTCGATGCTTTTCTCAACTCTTATTCCTACC 408
Query 488 AAGG 491
||||
Sbjct 409 AAGG 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5