BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02140.1 Length=1222 Score E Sequences producing significant alignments: (Bits) Value Ahg477443 jgi|Araly1|477443|fgenesh2_kg.3__144__AT3G02140.1 889 0.0 > Ahg477443 jgi|Araly1|477443|fgenesh2_kg.3__144__AT3G02140.1 Length=1162 Score = 889 bits (481), Expect = 0.0 Identities = 667/751 (89%), Gaps = 36/751 (5%) Strand=Plus/Plus Query 458 CCG-TGGAGGCTCAGACATGTTTCAGCTGGATCGGACGCGTTCTCTGCCGGTCGTAACGG 516 ||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 416 CCGATGGAGGCTCAGACATGTTCCAGCTGGATCGTACGCGTTCTCTGCCTGTCGTAACGG 475 Query 517 AGATGGATATAGAGAAAGAG-CGGA-AGG----TG--TC-A---GAGAAGACGAGGGCAT 564 || | || ||||| || ||| |||| ||| | | | |||||||||||||||| Sbjct 476 AGTTCGAGATAGACAAGGAGACGGAGAGGAAAAGGAAACGACCGGAGAAGACGAGGGCAT 535 Query 565 TTATGGAATCTCCGGTTACAAACAGAGGAGCATATCTAACAAAAGATAAAAACAGAGGCC 624 ||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||| Sbjct 536 TTATGGAATTTCCGGTTACAAACAGAGGAACATATCTCACAGAAGATAAAAACAGAGGCC 595 Query 625 AAGCCGTCGAAACAGAGAAGCCGAGGGCATTTCTGGAATTTAAGATTCCTCCGACCAAGG 684 ||| || ||||||||||||| |||||||||||||||||||||||||||| ||| ||||| Sbjct 596 AAGTCGCCGAAACAGAGAAGGCGAGGGCATTTCTGGAATTTAAGATTCCACCGGGCAAGG 655 Query 685 AGGGAAAGAAAGAAAAAGATCGGTTGGTTGTCACTGGTCCGGTCAACGGG-AAGGGTAAA 743 |||||||| |||| |||||||| || ||||||||| |||||||||| ||| || |||||| Sbjct 656 AGGGAAAGGAAGATAAAGATCGTTTTGTTGTCACTAGTCCGGTCAA-GGGAAATGGTAAA 714 Query 744 AATGGAAATACGGCGAAGAAGCAGAAGAATAATGTGGAAAATTCAGGAATGGAGAAGGCG 803 |||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||| Sbjct 715 AATGGAAATACGGCGAAG-A--AGAAGAAGAATGTGGAAGTTTCAGGAATGGAGAAGGCG 771 Query 804 AGGAACATTCTTGAAGACATGCCTTGTGTGTCGACGAGAGATGTCGGAGCCGACGGGAAA 863 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 772 AGGAACATTCTAGAAGACATGCCGTGTGTGTCGACGAGAGATGTCGGAGCCGACGGGAAA 831 Query 864 CGAGTGGAAGGGTTTCTTTACTGGTACGGAGGGAACAAGGAGGAGGTCAAGATAGTTTGT 923 |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||| Sbjct 832 CGAGTGGAAGGGTTTCTTTATTGGTACGGAGGGAAAAAGGAGGAGGTCAGGATAGTCTGT 891 Query 924 GTTTGCCACGGCAGTTTTCTTTCTCCGGCGGAATTTGTTAGGCACGGCGGAGGTACCGTC 983 |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 892 GTTTGCCATGGTAGTTTTCTTTCTCCGGCGGAGTTTGTTAGGCACGGCGGAGGTACCGTC 951 Query 984 AGCGATGATGATGGTGGTGATGTTATGATTAACCCTCTTAGACATATTGTTGTTAAACTT 1043 ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 AGCGACGACGGTGGTGGTGATGTTATGATTAACCCTCTTAGACATATTGTTGTTAAACTT 1011 Query 1044 CCTTCTTCTTC-T---A-TC--T--AGGGATTATT-ATTTATCCCCAACTAT-TATTA-- 1090 ||||||||||| | | || | |||||||||| |||||||||||||||| ||||| Sbjct 1012 CCTTCTTCTTCCTTGTAGTCGATCTAGGGATTATTTATTTATCCCCAACTATATATTATT 1071 Query 1091 -GAGCTCTCATTTTTTGTTTTCCCTAACTTTCAAAATGTAACGATGTCAAACTAATTTGA 1149 ||| ||||||||||| ||||| | || ||||||| ||||||||||||||| |||||||| Sbjct 1072 AGAGGTCTCATTTTTTTTTTTCTC-AATTTTCAAAGTGTAACGATGTCAAAATAATTTGA 1130 Query 1150 CCGACTAAACTA-GCTGAAGCATGTACATTT 1179 ||||| | ||| |||||||||||||||||| Sbjct 1131 CCGACGA--CTAAGCTGAAGCATGTACATTT 1159 Score = 652 bits (353), Expect = 0.0 Identities = 396/417 (95%), Gaps = 2/417 (0%) Strand=Plus/Plus Query 6 AAAATTGTTTCGTCTCTCTCAAGATTGAAAATAGAAAGTTAAGCCAAAAACGTTTCTCCC 65 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 2 AAAATTGTTTCGTCTCTCTCAAGATTGAAAATAGAAAGTTCAGCCTAAAACGTTTCTCCC 61 Query 66 TTCTCTTTCGAATTTCTCTGACTTTGATA--TTTGGTTATGGAGATGATAAGAGGCAGGG 123 |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 62 TTCTCTTTCGAATTTCTCTGACTTCGATATTTTTGGTTATGGAGATGATAAGAGGCAGGG 121 Query 124 GAATCCCAAACGGCGTCGTTCAAGTACCCAATCTTTCTGCTAATAATCTCTTGCAGAAGT 183 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 122 GAATCCCAAACGGCGTCGTTCAAGTGCCGAATCTTTCTGCTAATAATCTCTTGCAGAAGT 181 Query 184 TTTTCATCGCAAGCAACCATTTTTGTCAGCGAGACTCTGAGCATGGTGAGAATCAACaag 243 |||||||||||||||||||||||||||||| ||||||||||| |||||||| || | ||| Sbjct 182 TTTTCATCGCAAGCAACCATTTTTGTCAGCTAGACTCTGAGCCTGGTGAGAGTCGAGAAG 241 Query 244 aagcgaagaagagagaagatgaagcagaagaggatgagaaagaCGTGGAGCTAACGTTAG 303 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 AAGCAAAGAAGAAAGAAGATGAAGCAGAAGAGGATGAGAAAGACGTGGAGCTAACGTTAG 301 Query 304 GTCTTTCGCTTAATGGACAGTTTGGTACGGATCCGAGATCGAGAAAAAGGAGGCACTTTG 363 ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| Sbjct 302 GTCTTTCGCTTAATGGACAGTTTGGTACGGATCCGAGATCGAGGAAAAGGAAGAACTTTG 361 Query 364 AACTGGGTCGATCTTCTTCGATACCGGAAGGTTTCGTCTTCGATGAACAAAGATCCG 420 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 362 ATCTCGGTCGATCTTCTTCGATACCGGAAGGTTTTTTCTTCGATGAACAAAGATCCG 418 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45633131649 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5