BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02170.1
Length=3300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927692 jgi|Araly1|927692|scaffold_300149.1 4388 0.0
Ahg488402 jgi|Araly1|488402|fgenesh2_kg.6__1536__AT5G15580.1 213 7e-54
> Ahg927692 jgi|Araly1|927692|scaffold_300149.1
Length=2756
Score = 4388 bits (2376), Expect = 0.0
Identities = 2636/2763 (95%), Gaps = 12/2763 (0%)
Strand=Plus/Plus
Query 367 GTTAAGTA-GAGGAAGAAGATATGTCTGCAAAACTTCTATATAACTTGTCAGATGAGAAT 425
|||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GTTAAGTAGGA-GACGAAGATATGTCTGCAAAACTTCTGTATAACTTGTCAGATGAGAAT 59
Query 426 CCAAATCTGAATAAACAGTTTGGATGCATGAATGGGATCTTTCAAGTGTTTTACCGGCAA 485
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 CCAAATCTGAATAAACAGTTTGGATGCATGAATGGGATCTTTCAAGTCTTTTACCGGCAA 119
Query 486 CATTGTCCCGCGACACCAGTCACCGTCTCCGGCGGCGCAGAGAAGTCTTTGCCTCCAGGG 545
|||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 120 CATTGTCCGGCGACACCAGTCACCGTCTCCGGCGATGTAGACAAGTCTTTGCCTCCAGGG 179
Query 546 GAAAGAAGAGGTAGCGTCGGTGAAACCAACATGGAAAGTGATAAAGAAACGGAGAGGAGT 605
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 GAAAGAAGAGGTAGCGTCGGTGAAATCAACATGGAAAGTGATAAAGAAACGGAGAGGAGT 239
Query 606 AGTACCAAAAAGAAGAAGTCTGCAGCAAAAGAGAAGCATAGAGTCTCTTTTGAATCATCT 665
|||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 240 AGTACCAAGAAGAAGAAGTCTGCAGCAAAGGAGAAGCATAGAGTCTCTTCTGAATCCTCT 299
Query 666 TCAAGACCTTCATTTTCGTCTTCTCCACGCTCCTCTAGCTTCTCGTCTGCAGAAGTCAGT 725
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 TCGAGGCCTTCATTTTCGTCTTCTCCACGCTCCTCGAGCTTCTCGTCTGCAGAAGTCAGT 359
Query 726 ACCACAGCTTCTCAATTTGACCAGCCTGGTGAGAATCTGATCAGAGAACAGCCCAATGGT 785
|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 360 ACCACAGCTTCTCAATTTGACCCGCCTGGTGAGAACCTGATCAGAGAACATCCCAATGGT 419
Query 786 GGCTTGATGATGCCGTATGATCTAAAGGAGCTTGTCAAAGGCTCTATTAATAGAGAAATT 845
||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 420 GGCCTGATGATGCCGTATGATCTTAAGGAGCTTGTGAAAGGCTCTATTAATAGAGATATG 479
Query 846 AGAACTAGAGGTGAAGAAGCAT-CCTTCACTCAGCAGCAGCAGCCCATTTCAGCTCGAAG 904
||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 480 AGAACTAGAGGCGAAGAAGC-TGCCTTCACTCAGCAGCAGCAGCCCAATTCAGCTCGAAC 538
Query 905 TAGCATGTTGCTTCTCAAAGAATCATCATTGCGTTCACCATGTCGGAGTTCTAATGAGTG 964
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 TAGCATGTTGCTTCTCAAAGAATCATCATTGCGTTCACCATATCGGAGTTCTAATGAGTG 598
Query 965 GAATGAAGGAAGAGGAGCGGCTATGAAGTTTAAGGAAAGTCACCGGCTTTCTTATGATGA 1024
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAATGAAGGAAGAGGAATGGCTATGAAGTTTAAGGAAAGTCACCGGCTTTCTTATGATGA 658
Query 1025 GAGGGAGATGAGAAACAACGGATTCAGGGTGGGTTCAAAGTTGAAAGAGACACCGAGGTT 1084
||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 659 GAGGGAGATAAGAAACAACGGGTTCAAGGTGGGTTCGAAGTTGAAAGAGACACCGAGGTT 718
Query 1085 GTCGTTGGATAGTAGATCCAATTCCTTTAGGAGTCCGAGAGCAGATGCTGCGAGATCGAG 1144
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 719 GTCGTTGGATAGTAGATCGAATTCCTTCAGGAGTCCGAGAGCAGATGCTGCGAGATCGAG 778
Query 1145 TTGTCCAGAGGAACCCGCAACAATGACTCACAGGAGATCGAGTTCTAGTGTTGTTGCCAA 1204
|||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||
Sbjct 779 TTGTCCAGAGGAACCCGCAACAATGAATCACAGGAGATCAAGTTCGAGTGTTGTTGCTAA 838
Query 1205 ATTGATGGGTCTTGAAGTCATTGCAGACAATTCTGATACTGAACAGAGAAGAGAGAACCG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTGATGGGTCTTGAAGTCATTGCAGACAATTCTGATACTGAACAGAGAAGAGAGAACCG 898
Query 1265 GTTTTGTGACTCTCCAAGGCCAATGTCCCGAGTGGAACCAACAGCTCTACAGAGATCTAG 1324
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 899 GTTTTGTGACTCTCCAAGGCCAATGTCCAGAGTGGAA-C--CAGCTCTACAGAGATCTAG 955
Query 1325 AAGCGTAGATTCGATCAAGAGGATACCTGCTTCAGCTGCTTCTAAGTTTCCAATGGAACC 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAGCGTAGATTCGATCAAGAGGATACCTGCTTCAGCTGCTTCTAAGTTTCCAATGGAACC 1015
Query 1385 AGCTCCATGGAAGCAAATGAAAGCAGGAGACTCTGCACTGACGGTATATGGTGAAATTCA 1444
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1016 AGCTCCATGGAAGCAAATGAAAGCAGGCGACTCTGCACTGACTGTATATGGTGAAATTCA 1075
Query 1445 GAAGCGGCTTACGCAGTTGGAGTTCAAAAAGTCGGGAAAAGATCTCAGAGCTCTTAAGCA 1504
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAAGCGACTTACACAGTTGGAGTTCAAAAAGTCGGGAAAAGATCTCAGAGCTCTTAAGCA 1135
Query 1505 AATACTTGAGGCTATGGAGAAAACGCAGCAGCTGATAGATGAAAGCAGGGACGACGGTAC 1564
|||||||||||||||||||||||| |||||| |||||||||||||||| || ||| ||||
Sbjct 1136 AATACTTGAGGCTATGGAGAAAACACAGCAGTTGATAGATGAAAGCAGAGATGACAGTAC 1195
Query 1565 TCTGAGTACAACCACTCTTATGCAGAGAACTCACAAGCCAGTTTCAGCTGCAACAAGTCC 1624
||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||
Sbjct 1196 TCTGAATACAACCACTCTTTTGCAGAGAACTCACCAGCTAGTTCCAGCTGCAACAAGTCC 1255
Query 1625 AGCCAGGAACTTCAAATCTTCATCGATCGTTGTTATGAAATCTGCAGCTCCAGTTTCCAC 1684
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1256 TGCCAGGAACTTCAAATCTTCATCGATCGTTGTTATGAAATCCGCGGCTCCAGTTTCCAC 1315
Query 1685 CTCTCCGCTGCCACAGAATGTCACCCTACCAAATGTCAAGGTTGGAAACTCTAGACAAAC 1744
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1316 CTCTCCGCTACCACAGAATGTCACCTTACCAAATGTCAAGGTTGGAAACTCTAGACAAAC 1375
Query 1745 CCGGAAAGTCACCTCAGGGAAGCAGAACGCAATGGATTTAACCCCAAGGCCAGGCCTTTA 1804
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1376 CCGGAAAGTCACCTCGGGGAAGCAGAACGCGATGGATTTAACCCCAAGGCCAGGCCTTTA 1435
Query 1805 CAAGGGCCAACTCGATTCCACGAAGAGCAATAGCCCAAAAACAGTACGGTCGAGGCAAGC 1864
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 1436 CAAGGGCCAACTCGATTCCACAAAGAGCAATAGCCCCAAAACATTACGGTCGAGGCAAGC 1495
Query 1865 TTTGGCTGCAGATGCTGGTTCCATGACCAAGTCAGGTAGGAGCCAACAGCACAGTGTCAG 1924
|| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1496 TTCGGCTGCGGATGCTGGTTCCATGATCAAGTCAGGTAGAAGCCAACAGCACAGTGTCAG 1555
Query 1925 CCCAAGAACACAGCCAAAAAAGCTCGGGTTCGAGAAACAGACTCGACCCACAACTCCAAA 1984
||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1556 CCCAAGAACGCAGCCAAAAAAGCTTGGGTTCGAGAAACAGTCTCGACCCACAACTCCAAA 1615
Query 1985 ATCAGAGCCAGGCAAAAGGCAACTCGGAAGGCAGCAAACAGAGGTAGCCTCTCCGAGAAG 2044
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 1616 ATCAGAGCCAGGCAAAAGGCAACTCGGAAAGCAGCAAACAGAGGTAGCCTCCCCGAGTAG 1675
Query 2045 AAAACAGATGATAAAACCTCACAGTACTCTTCAGCAACCTGATGACCGATTAAGCGATGC 2104
||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1676 AAAACAGCTGATAAAACCTCACAGTACTCTTCAGCAACCTGATGACAGATTGAGCGATGC 1735
Query 2105 AAGGAGCGACTTGAGGAGTCTAAGGTCTGACAGCAACATAAGCTTGGGATCGAATGTTGA 2164
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1736 AAGCAGCGACTTGAGGAGTCTAAGATCTGACAGCAACATAAGCTTGGGATCGAATGTTGA 1795
Query 2165 CATCGAGGTTACAAGCAGACATAGGCTGGAGAGGAACTGTGACTTCCCAGAGCAGCACAC 2224
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1796 CATCGAGGTTACAAGCAGACATAGGCTGCAGAGGAACTGTGACTTCCCAGAGCAGCACAC 1855
Query 2225 CCCCAAACAAAGGAGTCCAGACTTTGGAATCAAACAAGACAGACCGTCCCTAAAACCTCT 2284
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1856 CCCAAAACAAAGGAGTCCGGACTTTGGAATCAAACAAGACAGACCATCCCTAAAACCTCT 1915
Query 2285 GAAAGTTACCGTTGAACAACCGAGCCCTGTTTCAGTTCTTGATGCAGTCTTCGACGAAGA 2344
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GAAAGTTACCATTGAACAACCGAGCCCTGTTTCAGTTCTTGATGCAGTCTTCGACGAAGA 1975
Query 2345 GGATTCACCGTCCCCTGTGAGGAAGATATCCCTTAGTTTTAAAGAGGAGGATGCCTTACG 2404
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1976 GGATTCACCGTCCCCTGTGAGGAAGATATCCCTTAGTTTTAAAGAGGAGGATGCTTTACG 2035
Query 2405 TTCTGAAGAATCTGAGTGGATAAACAAGCCTACCAGCTTCTGCAGATCCGTACCATTTCC 2464
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2036 TTCTGAAGAATCTGAGTGGATAAACAAGCCTACCAGCTTCTGCAGATCCATACTATTTCC 2095
Query 2465 TCAGAGTAACCGGGGACC-AATGAAGCCAAGTTCTGATCATTTTGAATGCT-CACCTGAA 2522
||| |||||||||| ||| || |||| ||||||||||| ||||||||||| | ||||||
Sbjct 2096 TCACAGTAACCGGG-ACCCAACAAAGCGAAGTTCTGATCTTTTTGAATGCTTC-CCTGAA 2153
Query 2523 GAAGGTGCAGACTTCAAAAGCGGCAACCACAAGTACATCTTAGAGATATTGTTGGCCTCA 2582
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 2154 GAAGGTGCAGACTTCAAAGGCGGCAACCACAAGTACATCTTAGAGATCTTGTTGGCCTCA 2213
Query 2583 GGGATTCTAAGAGATCTTGAATACAGCATGATAAGCTTTCAGCTGCACCAAACGCGCCTC 2642
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2214 GGGATTCTAAGAGATCTTGAATACAGCATGATAAGCTTTCAGCTGCATCAAACGCGCCTC 2273
Query 2643 CCGATCAACCCTGGACTGTTCTTTATCCTGGAACAGAACAAGGCCAGTAATGTGACTCTA 2702
|| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 2274 CCAATCAACCCTGGACTGTTCTTTATCCTAGAACAGAATAAGGCCAGCAATGTGACTCTA 2333
Query 2703 CCGGACAACAAACACAGAGGTAGAGGATTCAGACAACAGCAGACAAACCCAACAGAGACA 2762
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |
Sbjct 2334 CCGGACAACAAACACAGAGGCAGAGGATTCAGACAACAGCAGACAAATCCGACAGAGAAA 2393
Query 2763 ATCAGGAGAAAACTCGTCTTCGACACCGTTAACGAGATTTTAGCTCGGAAGTTCACTGCA 2822
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2394 ATCAGGAGAAAACTCGTCTTCGACACCATTAATGAGATTTTAGCTCGGAAGTTCACTGCA 2453
Query 2823 GAAGGCTGCATCAAACCACGTTTAATCGCAAATCCACTTAAAAAATTGGAGAAAATATCA 2882
|||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 2454 GAAGGCTGTATCAAACCACGTTTAACCGCAAATCCACTAAAAAAAGTGGAGAAAATATCA 2513
Query 2883 AAAGAGGAGCAACTTCTGCAGACTCTGTGTTCAGAGATTGATAGGTTACAACAAAACAAC 2942
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 AAAGAGGAGCAACTTTTGCAGACTCTGTGTTCAGAGATTGATAGGTTACAACAAAACAAC 2573
Query 2943 TCAAACTGTATCTTGGAGGACGACGAGGAAGACATCATATGGGAGGACCTGCAAAGTCAA 3002
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 TCAAACTGTATCTTGGAAGACGACGAGGAAGACATCATATGGGAGGACCTGCAAAGTCAA 2633
Query 3003 AGCATGAACTTGAAGGAGTTTGAAGGAGAGACTCCAGGAATTGTGTTAGATATTGAGAGA 3062
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2634 GGCATGAACTTGAAGGAGTTTGAAGGAGAGACTCCAGGAATTGTGTTAGATATTGAGAGA 2693
Query 3063 ATGATTTTCAGAGACTTGGTTAATGAAGTTTGCTTCTGCTAAtttttttAAGGTTATCAG 3122
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2694 ATGATTTTCAGAGACTTGGTTAATGAAGTTTGCTTCTGCTAATTTTTT-ATGGTTATCAC 2752
Query 3123 TTA 3125
|||
Sbjct 2753 TTA 2755
> Ahg488402 jgi|Araly1|488402|fgenesh2_kg.6__1536__AT5G15580.1
Length=3491
Score = 213 bits (115), Expect = 7e-54
Identities = 304/392 (78%), Gaps = 26/392 (7%)
Strand=Plus/Plus
Query 370 AAGTAGAGGAAGAAG-ATATGTCTGCAAAACTTCTATATAACTTGTCAGATGAGAATCCA 428
||||||| ||||||| | ||||| || || ||| | || |||||||||||||||||||||
Sbjct 546 AAGTAGAAGAAGAAGAAGATGTCGGCGAAGCTTTTGTACAACTTGTCAGATGAGAATCCA 605
Query 429 AATCTGAATAAACAGTTTGGATGCATGAATGGGATCTTTCAAGTGTTTTACCGGCAACAT 488
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 606 AATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTTTTACCGGCAACAT 665
Query 489 TGTCC-CGCGACACCAGTCACCGTCTCCGGCGGCGCAGAG-AAGTCT-TTGCCTCCAGGG 545
| ||| | | | || || |||||| |||| | | || |||||| || ||| ||||
Sbjct 666 TATCCAC-CAAGACGTGTTACCGTCGCCGGAGATG-AGCTCAAGTCTCTT-CCTTCAGGC 722
Query 546 GAAAGAAGAGGTAGCGTCGGTGAAACCAACATGGAAAGTGATAA-A--GAAACGGAGAGG 602
||| ||| | | |||||||| |||||||| ||| || || | ||||||||||
Sbjct 723 AAAACAAGTGACAATGTCGGTGATACCAACATTTCAAGGGACAAGAAAGAAACGGAGA-- 780
Query 603 AGTAGTACCAAAAAGAAGAAGTCTGCAGCAAAAGAGAAGCATAG---AGTCTCTTTTGAA 659
|| |||| | || ||||||| ||||| || ||||| || || |||||| | ||||
Sbjct 781 AG-AGTA--AGAA-GAAGAAGGCTGCA--AAG-GAGAAACAGAGGGGAGTCTCCTCTGAA 833
Query 660 TCATCTTCAAGACCT-TCATTTTCGTCTTCTCCACGCTCCTCTAGCTTCTCGTCTGCAGA 718
|| || || || | || ||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct 834 TCGTCCTCGAGGT-TATCCTTTTCTTCTTCACCATGCTCCTCGAGCTTCTCATCTGCAGA 892
Query 719 -AGTCAGTACCACAGCTTCTCAATTTGACCAG 749
| | || ||||| ||||| || ||||| |||
Sbjct 893 TATT-AGCACCACGGCTTCCCAGTTTGAACAG 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124562436429
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5