BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02280.1
Length=2201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927706 jgi|Araly1|927706|scaffold_300163.1 2928 0.0
Ahg918672 jgi|Araly1|918672|Al_scaffold_0777_1 682 0.0
Ahg932962 jgi|Araly1|932962|scaffold_400950.1 289 7e-77
> Ahg927706 jgi|Araly1|927706|scaffold_300163.1
Length=1886
Score = 2928 bits (1585), Expect = 0.0
Identities = 1805/1907 (95%), Gaps = 31/1907 (2%)
Strand=Plus/Plus
Query 127 CGGGTGGTGGCAGTGGCGGCGATGGGAGAAAAACAAAGGAAGCTGCTTGTGTTGTATGCC 186
|||||||| | ||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 1 CGGGTGGT-GAAGTGGCGGCGATGGGAGAAAAGCCGAGGAAGCTGCTTGTGATGTATGCT 59
Query 187 TCTCAGACCGGAAACGCTCTTGATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGT 246
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTCAGACCGGGAACGCTCTTGATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGT 119
Query 247 GGACTGCCAGCTTCTGTCGTCTCCACCGACGAATTCGACACGAGTTCCTTACCTCATCAT 306
||| | ||||| ||| ||||||||||||||||||||||| ||||||||||| | | ||||
Sbjct 120 GGATTTCCAGCATCTATCGTCTCCACCGACGAATTCGACGCGAGTTCCTTA-C-C-TCAT 176
Query 307 GAGGAGGCTGTTGTTTTTGTTGTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGGAGGCTGTTGTTTTTGTTGTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTT 236
Query 367 AAGGCATTTTGGAGGTTTCTTCTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGGCATTTTGGAGGTTTCTTCTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTT 296
Query 427 CGCTATGCAGTGTTTGGACTAGGTGATTCTGGTTACCAGAAGTACAACTTTGTAGCAAAG 486
|||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 297 CGCTATGCGGTGTTTGGATTAGGTGATTCTGGTTACCAGAAGTACAATTTTGTAGCAAAG 356
Query 487 AAGCTAGACAAAAGATTATCAGATCTTGGGGCCACAACCATCATTGAAAAAGGTCTAGGA 546
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 AAGCTAGACAAAAGATTATCAGATCTGGGGGCCACAACCATCATTGAAAAAGGTCTAGGA 416
Query 547 GATGATCAACACCCATCAGGGTATGAAGGAACTCTTGATCCGTGGATGCTTTCTTTGTGG 606
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 GATGATCAACACCCATCAGGGTATGAAGGAACTCTTGATCCGTGGATGCTGTCTTTGTGG 476
Query 607 AGGACATTATATCAGATCAATCCAAAATACTTTCCTAAAGGTCCAGATGTGAAAATTCCT 666
|| |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 477 AGTACATTATACCAGATCAATCCAAAATACTTTCCTAGAGGTCCAGATGTGAAGATTCCT 536
Query 667 CAAGATGAAGTAATTGATAAGCCTAAATATAGGATTTTATTTCATAAGCAGGAGAAATTG 726
|||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 537 CAAGATGAAGTAATTGATCAGCCTAAATATAGGATTTTATATCATAAGCGGGAGAAATTG 596
Query 727 GAGCCTAAATTATTGTCAGATTCAGATATCATACAAAGAGCCCGTGGAATGTCCCCAGGA 786
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 597 GAGCCTAAATTATTGACAGAGTCAGATATCATACAAAGAGCCCGTGGAATGTCCCCGGGA 656
Query 787 AAATTATTCAAGGACAAAAGTAAACCAGACTGCTTTCTCAAGATGACCCGCAATGAAGTC 846
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 657 AAATTATTCAAGGACAAAAGTAAACCAGACTGCTTTCTCAAGATGACCAGAAATGAAGTC 716
Query 847 TTGACTAAAGCTGAAAGCACAAAGGATGTCCGCCACTTTGAGTTCCAGTTTGTTTCTTCT 906
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 TTGACTAAAGCTGGAAGCACAAAGGATGTCCGCCACTTTGAGTTCCAATTTGTTTCTTCT 776
Query 907 ACTATCGAATATGAAGTTGGCGATGTTGTTGAGCTTCTTCCAAGCCAAAATTCTTCAGTG 966
| ||| ||||||||||| || |||||||||||||||||||| ||||||||| ||||||
Sbjct 777 AATATTGAATATGAAGTCGGTGATGTTGTTGAGCTTCTTCCTAGCCAAAATCCTTCAGCA 836
Query 967 GTAGATGCGTTTATAGAACGCTGCGGTTTAGACCCAGAATCATTCATTACAGTTGGTCCG 1026
|||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct 837 ATAGATGCGTTTATAGAACGCTGCGATTTAGACCCAGAATCATTCATCACAATTGGTCCG 896
Query 1027 CGAGAGACAGAGAATAGTAGTTTTAGTGAAGAAATGATTACACAGATCCCTATTAAGCTT 1086
|||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||
Sbjct 897 AGAGAGACAGAGAATAGTAGTTTCAATGAAGAAATGATTACACAGCTCCCTATCAAGCTT 956
Query 1087 AAGACTTTTGTTGAATTAACAATGGATGTTACATCCGCTTCACCTCGACGATACTTCTTT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AAGACTTTTGTTGAATTAACAATGGATGTTACATCCGCTTCACCTCGACGATACTTCTTT 1016
Query 1147 GAGATTATGAGCTTCTATGCAACAGCTGAACATGAGAAGGAAAGACTTCAATACTTTGCC 1206
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAGGTTATGAGCTTCTATGCAACAGCTGAACATGAGAAGGAAAGACTTCAATACTTTGCC 1076
Query 1207 TCACCCGAGGGGCGGGATGATCTCTACAATTACAATCAGAAGGAAAGAAGAAGCATTCTT 1266
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 TCACCCGAGGGGCGGGATGATCTCTACAATTACAATCAGAAGGAAAGAAGGAGCATTCTT 1136
Query 1267 GAGGTGCTAGAGGATTTTCCTTCCGTACAAATCCCTTTTGATTGGCTAGTACAGTTAGTC 1326
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1137 GAGGTGCTAGAGGATTTTCCTTCCGTACAAATCCCATTTGAGTGGCTAGTACAGTTAGTC 1196
Query 1327 CCACCGCTAAAACCAAGAGCTTTTTCGATATCTTCGTCTCCTTTGGCCCACCCTGCCGCA 1386
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1197 CCACCGCTAAAACCAAGAGCTTTTTCGATATCATCGTCTCCTTTGGCCCACCCTGCT-CA 1255
Query 1387 -GTACATTTGACTGTAAGCATAGTATCATGGATCACGCCTTATAAGAGAACTCGGAAAGG 1445
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1256 AGTACATTTGACCGTAAGCATAGTATCATGGATCACGCCTTATAAGAGAACTCGAAAAGG 1315
Query 1446 TCTGTGCTCCTCTTGGCTTGCAAGCCTCGCACCTGAACAAGAGGTAAACATACCGGTTTG 1505
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1316 TCTGTGCTCCTCTTGGCTTGCAAGCCTCACACCTGAACAAGAGGTAAACATACCGGTTTG 1375
Query 1506 GTTTCACAAAGGCTCCCTTCCTGCTCCATCTCAGTCGCTTCCGCTCATCTTAGTGGGACC 1565
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1376 GTTTCACAAAGGCTCCCTTCCTGCTCCATCACAGTCGCTTCCGCTCATCTTAGTGGGACC 1435
Query 1566 CGGAACCGGATGTGCGCCATTCCGTGGATTCATAGCTGAGAGAGCCGTACAAGCTCAGTC 1625
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1436 TGGAACCGGATGTGCGCCTTTCCGTGGGTTCATAGCTGAGAGAGCCGTACAAGCTCAGTC 1495
Query 1626 TAGCCCGGTTGCCCCCGTCATGTTCTTCTTTGGTTGCAGAAACAAAGACACAGACTTTCT 1685
||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1496 TAGCCTGATTGCGCCCGTCATGTTCTTCTTCGGTTGCAGAAACAAAGACACAGACTTTCT 1555
Query 1686 ATACCGCGATTTCTGGGAGTCTCACGCAAGAGAAGGAGGCATGCTCTCTGAAGGAAAAGG 1745
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ATACCGCGACTTCTGGGAGTCTCACGCAAGAGAAGGAGGCATGCTCTCTGAAGGAAAAGG 1615
Query 1746 CGGTGGCTTTTACACAGCGTTCTCTAGAGACCAACCAAAGAAGGTTTACGTGCAACATAA 1805
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1616 CGGTGGCTTTTACACAGCGTTCTCTAGAGACCAACCGAAGAAGGTTTACGTGCAACATAA 1675
Query 1806 GATCCGCGAAATGAGCAAGAGAGTTTGGGATTTACTCTGTGATGGAGCCGCTGTTTACGT 1865
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1676 GATCCGCGAAATGAGCAAGAAAGTTTGGGATTTACTCTGTGATGGAGCTGCTGTTTACGT 1735
Query 1866 GGCGGGCTCGTCGACGAAAATGCCTTGTGATGTGATGTCGGCTTTCGAAGATATTGTGTC 1925
|||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 1736 GGCGGGCTCGTCGACGAAAATGCCTTGTGATGTGATGTCGGCTT-CG--GA----G-G-- 1785
Query 1926 GGAGGAGACAGGAGGAGGATCAAAGGAGGTAGCTTCACGGTGGCTTAAGGCTTTGGAGAA 1985
|| | |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1786 --AG-A--CAGGAGGA---TCAAAGGAGGTAGCTTCACGGTGGCTCAAGGCTTTGGAGAA 1837
Query 1986 GACAGGGAGGTAC-A---A---TGTTGAAGCTTGGTCTTAACTCTCT 2025
| ||||||||||| | | |||||||||||||||||||||||||
Sbjct 1838 GGCAGGGAGGTACGAGGTACAATGTTGAAGCTTGGTCTTAACTCTCT 1884
> Ahg918672 jgi|Araly1|918672|Al_scaffold_0777_1
Length=435
Score = 682 bits (369), Expect = 0.0
Identities = 407/425 (96%), Gaps = 3/425 (1%)
Strand=Plus/Plus
Query 148 ATGGGAGAAAAACAAAGGAAGCTGCTTGTGTTGTATGCCTCTCAGACCGGAAACGCTCTT 207
||||||||||| | ||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 1 ATGGGAGAAAAGCCGAGGAAGCTGCTTGTGATGTATGCTTCTCAGACCGGGAACGCTCTT 60
Query 208 GATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGTGGACTGCCAGCTTCTGTCGTC 267
|||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||
Sbjct 61 GATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGTGGATTTCCAGCATCTATCGTC 120
Query 268 TCCACCGACGAATTCGACACGAGTTCCTTACCTCATCATGAGGAGGCTGTTGTTTTTGTT 327
|||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||
Sbjct 121 TCCACCGACGAATTCGACGCGAGTTCCTTA-C-C-TCATGAGGAGGCTGTTGTTTTTGTT 177
Query 328 GTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTTAAGGCATTTTGGAGGTTTCTT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTTAAGGCATTTTGGAGGTTTCTT 237
Query 388 CTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTTCGCTATGCAGTGTTTGGACTA 447
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 238 CTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTTCGCTATGCGGTGTTTGGATTA 297
Query 448 GGTGATTCTGGTTACCAGAAGTACAACTTTGTAGCAAAGAAGCTAGACAAAAGATTATCA 507
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GGTGATTCTGGTTACCAGAAGTACAATTTTGTAGCAAAGAAGCTAGACAAAAGATTATCA 357
Query 508 GATCTTGGGGCCACAACCATCATTGAAAAAGGTCTAGGAGATGATCAACACCCATCAGGG 567
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATCTGGGGGCCACAACCATCATTGAAAAAGGTCTAGGAGATGATCAACACCCATCAGGG 417
Query 568 TATGA 572
|||||
Sbjct 418 TATGA 422
> Ahg932962 jgi|Araly1|932962|scaffold_400950.1
Length=229
Score = 289 bits (156), Expect = 7e-77
Identities = 220/247 (89%), Gaps = 19/247 (8%)
Strand=Plus/Plus
Query 1796 TGCAACATAAGATCCGCGAAATGAGCAAGAGAGTTTGGGATTTACTCTGTGATGGAGCCG 1855
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1 TGCAACATAAGATCCGCGAAATGAGCAAGAAAGTTTGGGATTTACTTTGTGATGGAGCCG 60
Query 1856 CTGTTTACGTGGCGGGCTCGTCGACGAAAA-TGCCTTGTGATGTGATGTCGGCTTTCGAA 1914
|||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |||
Sbjct 61 CTGTTTACGTGGCGGGCTCGTCCAC-AAAACTGCCTTGTGATGTGATGTCGGCTTTGGAA 119
Query 1915 GATATTGTGTCGGAGGAGACAGGAGGAGGATCAAAGGAGGTAGCTTCACGGTGGCTTAAG 1974
|| |||||||||||| | |||||||| ||| | ||||||||| ||| |||
Sbjct 120 GACATTGTGTCGGAG-A--CAGGAGGA---TCA--G-------CTTCACGGTTGCTCAAG 164
Query 1975 GCTTTGGAGAAGACAGGGAGGTACAATGTTGAAGCTTGGTCTTAACTCTCTAACTTCCTT 2034
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 165 GCTTTGGAGAAGGCAGGGAGGTACAATGTTGAAGCTTGGTCTTAACTCT--AACTTCCTT 222
Query 2035 CATATGT 2041
|||||||
Sbjct 223 CATATGT 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82846282875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5