BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02380.1 Length=1315 Score E Sequences producing significant alignments: (Bits) Value Ahg477472 jgi|Araly1|477472|fgenesh2_kg.3__173__AT3G02380.1 1829 0.0 Ahg488429 jgi|Araly1|488429|fgenesh2_kg.6__1563__AT5G15840.1 431 7e-120 Ahg488432 jgi|Araly1|488432|fgenesh2_kg.6__1566__AT5G15850.1 230 3e-59 > Ahg477472 jgi|Araly1|477472|fgenesh2_kg.3__173__AT3G02380.1 Length=1174 Score = 1829 bits (990), Expect = 0.0 Identities = 1074/1116 (96%), Gaps = 0/1116 (0%) Strand=Plus/Plus Query 70 ATGTTGAAAGAAGAGAGTAATGAGAGTGGTACTTGGGCACGAGCATGTGACACTTGTCGT 129 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 52 ATGTTGAAAGAAGAGAGTAACGAGAGTGGTTCTTGGGCACGAGCATGTGACACTTGTCGT 111 Query 130 TCAGCCGCCTGCACTGTCTACTGTGAAGCCGACTCTGCCTACTTGTGCACCACCTGTGAT 189 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 112 TCAGCCGCCTGCACTGTCTACTGTGAAGCTGACTCTGCCTACTTGTGCACCACCTGTGAT 171 Query 190 GCTCGAGTTCACGCAGCCAACCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 249 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 172 GCTCGAGTTCACGCAGCCAATCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 231 Query 250 TCATGTGAGTCTGCCCCAGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGTACA 309 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 232 TCATGTGAATCTGCCCCGGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGCACA 291 Query 310 GCTTGTGATGCAGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAGCGAGTTCCG 369 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 292 GCTTGTGATGCTGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAACGAGTTCCG 351 Query 370 ATTCTTCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCTGAT 429 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 352 ATTCTGCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCAGAT 411 Query 430 AACGATGAGGATGATCGAGAGGTTGCTTCGTGGTTACTCCCTAATCCAGGGAAAAACATC 489 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | Sbjct 412 AACGATGAGGATGATCGAGAGGTGGCTTCGTGGTTACTGCCTAATCCAGGGAAAAACAGC 471 Query 490 GGTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGC 549 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 472 GGTAATCAGAACAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTCGTGGATTACAGC 531 Query 550 TCCAGCATGGACAACCAATTCGAAGATAATCAGTACACTCACTACCAGAGGAGCTTTGGA 609 ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| Sbjct 532 TCCAGCATGGACAACCAATTCGAAGATCATCAGTACAGTCACTACCAAAGGAGCTTTGGA 591 Query 610 GGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTCACCTGCAACAAAGCCAA 669 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 592 GGAGATGGAGTTGTGCCACTTCAAGTTGAAGAATCAACAAGTCACCTTCAACAAAGCCAA 651 Query 670 CAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAGGAGCTCACTACAACAACAAC 729 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 652 CACAACTTTCAGTTGGGTATCAACTATGGCTTCTCCTCAGGACCTCACTACAACAACAAC 711 Query 730 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 771 Query 790 GAGTCAACTGCAAGTGACATAACAGTCCAACACCCAAGAACTACTAAAGAGACGATAGAC 849 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 772 GAGTCAACAGCAAGTGACATAACAGTCCAACACCCAAGAACAACTAAAGAGACGACAGAC 831 Query 850 CAACTATCTGGTCCTCCTACTCAGGTGGTGCAACAGCTTACTCCAATGGAGAGGGAGGCT 909 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 832 CAACTAGCTGGTCCTCCTACTCAGGTGGTGCAGCAGCTTACTCCAATGGAGAGGGAGGCT 891 Query 910 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAATTTGACAAGACAATAAGATAT 969 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 892 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACGAGGAAATTTGACAAGACAATAAGGTAT 951 Query 970 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCAGATTCGCAAAGAGG 1029 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 952 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCCGATTCGCAAAGAGG 1011 Query 1030 ATAGAAACTGAAGCTGAGGCTGAAGAAATCTTCTCAACATCGCTAATGTCTGAGACTGGA 1089 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1012 ATAGAAATTGAAGCTGAGGCTGAAGAAATTTTCTCAACATCGCTAATGTCTGAGACCGGA 1071 Query 1090 TATGGAATTGTCCCTTCCTTCTAAACTCCTATGGCGAAGATAGACTAGATTGCATGCTGT 1149 ||||||||||| |||||||||| ||||| | |||||||||| |||||||||||||||||| Sbjct 1072 TATGGAATTGTTCCTTCCTTCTGAACTCGTGTGGCGAAGATGGACTAGATTGCATGCTGT 1131 Query 1150 AAATTACTTCTAGTTTGGATTTCTACAAGTTATTAC 1185 ||||||||||||||||| ||||||||||||| |||| Sbjct 1132 AAATTACTTCTAGTTTGTATTTCTACAAGTTTTTAC 1167 > Ahg488429 jgi|Araly1|488429|fgenesh2_kg.6__1563__AT5G15840.1 Length=1339 Score = 431 bits (233), Expect = 7e-120 Identities = 604/774 (78%), Gaps = 61/774 (8%) Strand=Plus/Plus Query 433 GATGAGGATGATCGA-GAGGTTGCTTCGTGGTTACTCCCTAATC-CAGGGAAAAACATCG 490 |||||||||| | | ||||| ||||||||| | ||||||| | ||| ||||| ||| Sbjct 491 GATGAGGATG-CCAAGGAGGTGGCTTCGTGGCTGTTCCCTAA-CTCAGACAAAAATATCA 548 Query 491 GTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGCT 550 ||| ||||| |||||||| |||||| ||| |||||| || || ||||||||||||| || Sbjct 549 ATAACCAGAACAATGGGTTATTGTTTAGTGATGAGTATCTAGACCTTGTGGATTACAACT 608 Query 551 CCAGCATGGACAACCAATT--C--G---A-A-GAT--A-ATCAG-TACACT-C-AC-TA- 593 | || |||||| || |||| | | | | || | | ||| | ||| | | || Sbjct 609 CAAGTATGGACTACAAATTCACAGGTCAATACCATCAACACCAGCAAAACTGCGGCGTAC 668 Query 594 C-CAGAGGAGCTTTGGAGGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTC 652 | |||| ||||| || |||||||||||||| ||||||||| |||||||||||| | | Sbjct 669 CACAGACGAGCTACGGGGGAGATGGAGTTGTTCCGCTTCAACTTGAAGAATCAAGGGGCC 728 Query 653 ACC--TGCAACA-AAGCCAACAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAG 709 ||| ||| || || |||||| || |||||||| | |||||| ||| || |||||||| Sbjct 729 ACCAGTGC--CATAA-CCAACAGAATTTTCAGTTCGATATCAAATAT-GA--CTCCTCAG 782 Query 710 G-AGCTCACTACAACAACAACTCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCA 768 | || |||||||||| |||||| || ||| ||||||| || || | ||| ||| Sbjct 783 GAAG-TCACTACAACGACAACT-GTT-----CCCTTAACCATAACGTATACATTTTATCT 835 Query 769 ATGGACATC-AGTGTTGTGCCAGAGTCAACTGCAAGTGACATAACAG-TCCAACACCCAA 826 ||||| | | | |||||||| |||||||| ||| |||||| ||||| | | |||||||| Sbjct 836 ATGGA-AACTGGCGTTGTGCCGGAGTCAACAGCACGTGACAAAACAGCTTC-ACACCCAA 893 Query 827 GAACTACTAAAGAGACGATAGACCAACTATCTGGTCCTCCTACTCAGGTGGTGCAA--CA 884 |||| | ||| |||||| |||||||||| ||| ||||| | |||| || | || || Sbjct 894 GAACGCCGAAAAAGACGACAGACCAACTACCTGACCCTCCAATTCAGATGAT--AACCCA 951 Query 885 GCTTACTCCAATGGAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAG 944 |||| ||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct 952 ACTTAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAG 1011 Query 945 GAAATTTGACAAGACAATAAGATATGCTTCAAGAAAGGCATATGCAGAGATAAGACCACG 1004 ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 1012 GAAATTTGAGAAGACAATAAGGTATGCTTCAAGGAAGGCATATGCAGAGATAAGACCGCG 1071 Query 1005 GATCAAGGGCAGATTCGCAAAGAGGATAGAAA-CTGAAGCTGAGG-CTGAAGAAATCTTC 1062 | |||| ||| | ||||||||||||| ||||| | ||||| |||| | ||| || | Sbjct 1072 GGTCAATGGCCGGTTCGCAAAGAGGAGAGAAATC-GAAGCCGAGGACC-AAGTGTTCAAC 1129 Query 1063 TCAACATCGCTAATGT-CTGAGACTGGATATGGAATTGTCCCTTCCTTCTAA-ACTCCTA 1120 ||| | ||| |||| | || || |||||||| ||||| ||||| | || | ||||||| Sbjct 1130 ACAA--T-GCTGATGTAC-GACACAGGATATGGCATTGTTCCTTCATGCTGATACTCCTA 1185 Query 1121 TGGCGAAGATA--GACTAGATTGCATGCTGTAAATTACTTCT-AGTTTG-GATT 1170 |||| || ||| |||||||||||| |||||||||||||| | |||||| |||| Sbjct 1186 TGGCAAAAATAAAGACTAGATTGCAAGCTGTAAATTACTTTTTAGTTTGAGATT 1239 > Ahg488432 jgi|Araly1|488432|fgenesh2_kg.6__1566__AT5G15850.1 Length=1592 Score = 230 bits (124), Expect = 3e-59 Identities = 290/366 (79%), Gaps = 28/366 (8%) Strand=Plus/Plus Query 891 TCCAATG-GAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAAT 949 ||||| | || || |||||||| |||||||||||||||||||||||||||| || |||| Sbjct 1227 TCCAA-GAGACAGAGAGGCTAGAGTCCTGAGATACAGAGAGAAGAAGAAGATGAGAAAAT 1285 Query 950 TTGACAAGACAATAAGATATGCTTCAAG-AAAGGCATATGCAGAGATAAGACCACGGATC 1008 |||| ||||| ||||||||||||||||| |||| | |||||||||| ||||||||||||| Sbjct 1286 TTGAGAAGACGATAAGATATGCTTCAAGGAAAG-CGTATGCAGAGAAAAGACCACGGATC 1344 Query 1009 AAGGG-CAGATTCGCAAAGAGGATA-GAAACTGAAGCTGAGGCTGAA-GAAATCTT-CTC 1064 ||||| | | || |||||||||| | ||| ||| || ||||| || ||| ||| ||| Sbjct 1345 AAGGGGCGGTTT-GCAAAGAGGA-ACGAAGTTGATGCAGAGGCA-AACGAAG-CTTTCTC 1400 Query 1065 AACA-TCGCTAATGTCTGAGACTGGATATGGAATTGTCCCTTCCTTCTAAA-CTCCTATG 1122 ||| || ||| || ||| || |||||||||||||| || || |||| | || ||||| Sbjct 1401 CACAATCA-TAACGTTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGCTATG 1459 Query 1123 GCGAAGATAGACTAGATTGCATGCT-GTAAATTACTTCTAGTTTGGATTTC-TACAAGTT 1180 || || | | ||||| |||||||| ||||||||||||| ||||| | ||| | |||||| Sbjct 1460 GC-AA-A-A--CTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAAGTT 1514 Query 1181 ATTACTGCA-T-ATGGGTCCTTAGTTTTGTGACTTTTGTCAAACTAGTACGAGTTTAATC 1238 |||| | | ||| | | || ||| | ||||||| |||||||||||||| ||| Sbjct 1515 GTTACCACGGTTATGCATA-T-AGGCCTGT-AGTTTTGTCTAACTAGTACGAGTT-AATT 1570 Query 1239 AGATAT 1244 |||||| Sbjct 1571 AGATAT 1576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49178562930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5