BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02400.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477473 jgi|Araly1|477473|fgenesh2_kg.3__174__AT3G02400.1 1548 0.0
> Ahg477473 jgi|Araly1|477473|fgenesh2_kg.3__174__AT3G02400.1
Length=1681
Score = 1548 bits (838), Expect = 0.0
Identities = 1027/1118 (92%), Gaps = 14/1118 (1%)
Strand=Plus/Plus
Query 646 AGGGTTGGGAGGCCCCGGAAGAACGCAAGTAGTGCAATTACGGAGGAAGAAGAAGTTGTG 705
|||||||||||||| |||||||||||| | |||||| ||||| |||||||||||||||||
Sbjct 568 AGGGTTGGGAGGCCTCGGAAGAACGCAGGCAGTGCAGTTACGAAGGAAGAAGAAGTTGTG 627
Query 706 GAGGAGAAAAAAGGCAACTCTAGGGCTCGGAGAGGTAAGAACAGTGAGATTGTCCAGAAA 765
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 628 GAGGAGAAAAAAGGCAACTCTAGGGCTCGGAGAGGTAAGAACACTGAGAGTGTGCAGAAA 687
Query 766 TCAATCAAATTGGAAGTTGAGGATACTCCCAAGGCAGTGGAAATCTCAGAGGTGAAAAGC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 688 TCAATCAAATTGGAAGTTGAGGATACTCCCAAGGCAGTGGAAATCTCAGAGGTCAAAAGC 747
Query 826 AGGAAGAGAGTGACAAGGAGCAAGCAGATAGAAAATGAATGTTTTGGATTGGAGGTTAAA 885
|||||||||||| |||||||||||||||| ||||||| ||||| ||| |||||||||||
Sbjct 748 AGGAAGAGAGTGGCAAGGAGCAAGCAGATTGAAAATGCCTGTTTGGGAATGGAGGTTAAA 807
Query 886 GATGAGAAGAGAACTACAAGGTCTACCAGAAGCAAGACGACTGAAATTGGTGGAGAGTCT 945
|||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||| |||
Sbjct 808 AATGAGATGAGAACTACTAGGTCTACCAGAAGCAAGAAGACTGAACTTGGTGGAGATTCT 867
Query 946 TTTCTGGAGTTGGAGATGGTCCTGAACCAAGCCCGGAAAAGCCGTGCAAAGAGGAAGAAA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TTTCTGGAGTTGGAGATGGTCCTGAACCAAGCCCGGAAAAGCCGTGCAAAGAGGAAGAAA 927
Query 1006 ATGGATGAGGAGCCATCCAAGGAGACTAGAAATGATGATGCCGGAGAAGAGGTTTTGAAG 1065
||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 928 GTGGATCAGGAGCCGTCCAAGGAAACTATAAATGATGATGCCGGAGAAGAGGTTTTGGAG 987
Query 1066 AACTGTCATGTTGAAGAAGATAAGGAAAATGAAGCTCAGGAAGGTTGCAGTGGAAGAAGT 1125
|||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 988 AACTGTCATGTTGAAGAAGATACTGAAAATGAAACTCAGGAAGGTTGCAGTGAAAGAAGT 1047
Query 1126 GATGACATATGTGATCAAGAAGATGAGAAGGAATGCGATGGATCTAAGAGGGTAGAGCAG 1185
||||||| ||||||| |||||||||||| |||| | ||||||||||||||||| ||||||
Sbjct 1048 GATGACAAATGTGATAAAGAAGATGAGAGGGAAGGTGATGGATCTAAGAGGGTCGAGCAG 1107
Query 1186 GTGGAGATTGAGTTAAGGAAGAAAAGCAC---AGTAG-A-A-GGCCTGAAATGCACTGAT 1239
||||| ||||||||||||||||| ||||| ||||| | | |||||||| || |||| |
Sbjct 1108 GTGGAAATTGAGTTAAGGAAGAAGAGCACATTAGTAGAAGATGGCCTGAACTGTACTGCT 1167
Query 1240 aaagaagatggagaaacagagaactcacaagatattgaaag-agaaaga-gaaaatgaaa 1297
| ||| |||||||| |||||||||| ||||||||||| ||| ||||| | || |||||||
Sbjct 1168 AGAGAGGATGGAGAGACAGAGAACTTACAAGATATTG-AAGAAGAAA-ATGATAATGAAA 1225
Query 1298 atgaaaaagaagctc-aagaaggttgcagtgaaagaa-gtgataaagaaTATGAGAGGGT 1355
| ||||| | | | | |||||||||||||||||| || ||||||||||| ||||||| ||
Sbjct 1226 AAGAAAATGGA-CACGAAGAAGGTTGCAGTGAAA-AATGTGATAAAGAAGATGAGAGAGT 1283
Query 1356 TGGTGGTGGGGCTAAGAGGGTAGAGCAGGTGGAGATTGAGTTAAGGAAGAAAAGCACCGT 1415
||||| |||| ||||||||||||||||||||||||| ||||| |||||||| |||||| |
Sbjct 1284 TGGTGATGGGTCTAAGAGGGTAGAGCAGGTGGAGATCGAGTTGAGGAAGAAGAGCACCTT 1343
Query 1416 AGGAGAAGATGACCTGAACTGTACTGTTAGAGAAGATGGAGAGACAGAAAACTTACAAGA 1475
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1344 AGGAGAAGATGACCTGAACTGTACTGTTAGAGAAGATGGAGAGACAGACAACTTACAAGA 1403
Query 1476 AATTGAAGAAGAGTGTCACGACGAGGAAAGTGACTGCAAGGTCGAGGAGGCTGGATTTGC 1535
|||||||||||| ||||| || |||||||||| ||||||||||||||||||||| ||||
Sbjct 1404 AATTGAAGAAGAATGTCATGAAAAGGAAAGTGAGTGCAAGGTCGAGGAGGCTGGAATTGC 1463
Query 1536 GACATTAGATGAGGAAAAGGTTGGGCAGGGATGGAACAATAAGAAAGTAGAGAGGGTAGA 1595
||||||||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||
Sbjct 1464 GACATTAGATGAGGAAAAGGTTGAGCAGGGCTGGAGCAATAAGAATGTAGAGAGGGTAGA 1523
Query 1596 AGTATATTTAGAAAAAATGAAACTAAGAGAATGGTTTGATGCCATAGAGGTTCAACTGCC 1655
|||| |||||| |||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1524 AGTAGATTTAGGAAAAATGAAACTAAGAGATTGGTTTGAGGCCATAGAGGTTCAACTGCC 1583
Query 1656 AAAACAGACAATTGAAGAAACAGAGAAGATGATTGAGCCCATGAGAAGTAAGAGTATGAG 1715
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1584 AAAACAGATAATTGAAGAGACAGAGAAGATGATAGAGCCCATGAGAAGTAAGAGTATGAG 1643
Query 1716 AGTTCACAAGCATATTGCAGAGCAAAAGGAAAAGGGCG 1753
||||||||||||||||||||||||||||||||||||||
Sbjct 1644 AGTTCACAAGCATATTGCAGAGCAAAAGGAAAAGGGCG 1681
Score = 992 bits (537), Expect = 0.0
Identities = 611/646 (95%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCCGCCATTGCTGAAGCTCGACTTCACCCAGGGTCCAAGAGCTGGCGATTCTCTA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCCGCCATTGCTGAAGCTTGACTTCACCCAGGGTCCAAGAGCTGGCGATTCTCTA 60
Query 61 GGGTTTAAACCCGGATCCACTATCCGAATTGGTCGAATCGTCCGTGGTAATGAAATCGCC 120
|||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 61 GGGTTTAAACCCGGATCCACTATCCGGATCGGTCGATTCGTCCGTGGTAATGAAATCGCC 120
Query 121 ATCAAAGACGCCGGAATCTCCACCAAGCACCTCCGGATCGTTTCCGATTCCGAGAACTGG 180
|| |||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 121 ATAAAAGACGCTGGAATCTCTACCAAGCACCTCCGGATCGTCTCCGATTCTGAGAACTGG 180
Query 181 ATAATCCACGATCTTGGTTCTTCCAACGGCACCATATTGAACTCTGACACTATCGACTCA 240
||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 181 ATAATCCACGATCTTGGGTCTTCCAACGGCACCATATTGAACTCGGAGACTATTGACCCA 240
Query 241 GATACGCCCGTCAATCTTAGCCATGGAGACGAAATTAAGCTTGGTGAGTACACTTCCATT 300
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GATACGCCCATCAATCTTAGCCATGGAGACGAAATTAAGCTTGGTGAGTATACTTCCATT 300
Query 301 TTGGTGAACTTTGGGAGTGATGTTGTTCAGGCGCCGCAGGAGCATAAGCTTCCGCCCAGG 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGTGAACTTTGTGAGTGATGTTGTTCAGGCGCCGCAGGAGCATAAGCTTCCGCCCAGG 360
Query 361 CCAAGGAGGAACAACAAGCGGCTTGCTGCTTCGGATCCGGATCCGGATCCTATTGAGTCG 420
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct 361 CCAAGGAGGAACAACAAGCGTCTTGCTG-TT----T-CGGATCCGGATCCTATTGAGTCG 414
Query 421 GTTCAGGAGAAACCAAAGCGCACGCGTGGATCGTCGAAGCAAGAGGAAAATGAACTGCCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTCAGGAGAAACCAAAGCGCACGCGTGGATCGTCGAAGCAAGAGGAAAATGAACTGCCC 474
Query 481 AAGAGTA-CTAGGGCTTCGAGGAAAAAGAATCTGGACGATATCGCCGATAAAGAAGAGGA 539
|||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 475 AAGA-TAACTAGGGCTTCGAGGAAGAAGACTCTGGACGATATCGCCGATAAAGAAGAGGA 533
Query 540 ATTGGATGTGGAAATTGAGAAGGTGGTCAAAGCTAGGGTTGGGAGGCCTCGGAAGAACGC 599
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 534 ATTGGAGGTGGAAATTGAGAAGAAAGTCAAATCTAGGGTTGGGAGGCCTCGGAAGAACGC 593
Query 600 AGGCAGTGCAATTGCGAAGGAAGAAGAAGTTGTGGAGGAGaaaaaa 645
|||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 594 AGGCAGTGCAGTTACGAAGGAAGAAGAAGTTGTGGAGGAGAAAAAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5