BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02420.1 Length=1410 Score E Sequences producing significant alignments: (Bits) Value Ahg927721 jgi|Araly1|927721|scaffold_300178.1 1751 0.0 > Ahg927721 jgi|Araly1|927721|scaffold_300178.1 Length=1077 Score = 1751 bits (948), Expect = 0.0 Identities = 1045/1090 (96%), Gaps = 14/1090 (1%) Strand=Plus/Plus Query 48 TCTCTCTCCGGCGATCTCATCCATGGCGGAAGGCGGCGAAGATTCCCAGCGGTTGAAGAA 107 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TCTCTCTCCGGCGATCTCATCCATGGCGGAAGGCGGCGAAGATCCCCAGCGGTTGAAGAA 60 Query 108 AATTGCGGCGGCTGCCTTCGACTACGAAAACGACGCTCGATGGGCCGATTACTGGTCCAA 167 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 AATTGCGGCGGCTGCCTTCGACTACGAAAACGACGCTCGATGGGCTGATTACTGGTCCAA 120 Query 168 TATCCTCATCCCTCCTCACATGGCTTCTCGTCCCGAGGTCGTCGACCATTTCAAGCGCAA 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TATCCTCATCCCTCCTCACATGGCTTCTCGTCCCGAGGTCGTCGACCATTTCAAGCGCAA 180 Query 228 ATTCTACCAACGCTACATCGATCCTGATCTTGTTGTGGAGCCTATGTCGACTTCATCTTC 287 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 ATTCTACCAACGCTACATCGATCCTGATCTTCTTGTGGAGCCTATGTCGACTTCATCTTC 240 Query 288 GTCTTCACAATCTGCCAGGCCAACTGCTACATCTGCATCTTCAACTGCATCTTCTAATGC 347 |||||| ||||| |||| | | | |||||| || || |||||||||||||||| Sbjct 241 GTCTTCGCAATCCGCCA-G---A---C--CATCTG---CTACATCTGCATCTTCTAATGC 288 Query 348 AAATGAACAAGTTCGTTCACGGAACTCAGGATCGGTTCCTCGAACCTCTGGGCCATCTGC 407 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 289 AAATGAACAAGTTCGTTCACGGAACTCAGGATCGGTTCCTCGAACATCTGGGCCATCTGC 348 Query 408 TACGACTGGTGCAACCCCAAGTTCAATGCGCTGGGATGAGCAGACGATTCAGTTTTCAGT 467 |||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 349 TACGGCAGGTGCAAACCCAAGTTCAATGCGCTGGGATCAGCAGACGATTCAGTTTTCAGT 408 Query 468 CAATGCTTGGGTTTTTGTTATAGCTGTGCTGGCAGTGCTACCTCTAATACCAAAGAACCT 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 CAATGCTTGGGTTTTTGTTATAGCTGTGCTGGCAGTGCTACCTCTAATACCAAAGAACCT 468 Query 528 CTCAAATAGGGCTTATCGTCTATCTTTCATGGGAACTGCATGCTCATCTCTATATTCCTT 587 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 469 CTCAAATAGGGCTTATCGTCTATCTTTCATGGGAACTGCGTGCTCATCTCTATATTCCTT 528 Query 588 ATACTCCTTATACGGGAGGCCAAGGGCATGGAATATGCAAGGGCTGCAAGTTTATTTTCA 647 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 529 ATACTCCTTATACGGGAGGCCAAGAGCATGGAATATGCAAGGGCTACAAGTTTATTTTCA 588 Query 648 ATCAATTGTGGCAGCAAAGGATTTCATCTACTTCATCTACTGCCTTACATTCGTCACTTC 707 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 589 ATCAATTGTGGCAGCAAAGGATTTCATCTATTTCATCTACTGCCTTACATTCGTCACTTC 648 Query 708 ACATCTCTGTCTCAAGTTTGCTTTGATTCCCATCTTGTGCCGGGCACTTGAACAAGTAGC 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 ACATCTCTGTCTCAAGTTTGCTTTGATTCCCATCTTGTGCCGGGCACTTGAACAAGTAGC 708 Query 768 CAAGTTCTTGAGGCGTAACTTTGGTCGGTCCACTATATACAGAAAGTACTTGGAAGACCC 827 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 709 CAAGTTCTTGAGGCGTAACTTTGGTCGTTCCACTATATACAGAAAGTACTTGGAAGACCC 768 Query 828 TTGTGTGTGGGTGGAGTCAAACACTACTACCCTCAACAT-CTTGTCATCGCAGGCTGAGA 886 ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 769 TTGTGTGTGGGTGGAGTCAAACACTACTACCCTTAACATTCT-GTCATCGCAGGCTGAGA 827 Query 887 TAGCCATTGGCTTCCTTCTGATTATCTCTCTGCTCTCATGGCAACGTAACATTATACAGA 946 |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 828 TAGCCATTGGCTTCCTTCTGATCATCTCTCTACTCTCATGGCAACGCAACATTATACAGA 887 Query 947 CGTTCATGTACTGGCAGCTATTGAAGCTGATGTATCAAGCACCGGTAACAGCTGGTTACC 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 888 CGTTCATGTACTGGCAGCTATTGAAGCTGATGTATCAAGCACCGGTAACAGCGGGTTACC 947 Query 1007 ACCAGAGCACGTGGAGCAGAATAGGGAGGACGGTGACTCCGATTATCCAACGTTACGCTC 1066 |||||||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||||| Sbjct 948 ACCAGAGCACATGGAGCAAAATCGGGAGGACAGTGACTCCGATTATCCAGCGTTACGCTC 1007 Query 1067 CTTTCTTGAATACTCCGGTCAGTGCCGTTCAGAGATGGTGGTTCAGGTGATAAAAAGAAA 1126 | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| Sbjct 1008 CCTTCTTGAATACTCCGGTGAGTGCCGTTCAGAGATGGTGGTTCAGGTGATCAAAACAAA 1067 Query 1127 CAAAATGCAG 1136 |||||||||| Sbjct 1068 CAAAATGCAG 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52716899080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5