BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02468.1 Length=1876 Score E Sequences producing significant alignments: (Bits) Value Ahg477481 jgi|Araly1|477481|fgenesh2_kg.3__182__AT3G02468.1 2817 0.0 Ahg488445 jgi|Araly1|488445|fgenesh2_kg.6__1579__AT5G15948.1 804 0.0 > Ahg477481 jgi|Araly1|477481|fgenesh2_kg.3__182__AT3G02468.1 Length=1691 Score = 2817 bits (1525), Expect = 0.0 Identities = 1652/1710 (97%), Gaps = 22/1710 (1%) Strand=Plus/Plus Query 1 ACGAACGCATCTCATTGCTTCATCATTACCAAATCATCAACT-TAATCGTTTCTCTCAAA 59 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1 ACGAACGCATCTCATTGCTTCATCATTACCAAATCATCATTTATAATCGTTTCTCTCAAA 60 Query 60 TTTAGGGTTTTCTCTTTTCTCGAAAGTCTTGCGGTTTTCTGAA-TCATCTCTATCTGGTT 118 ||||||| | | ||||||| ||||||||| |||||| ||||||||| Sbjct 61 TTTAGGG----------T-T------TCTTGCGTTTTTCTGAATTCATCTTTATCTGGTT 103 Query 119 TGAGGGTTTCGTTTGATATCTGGAGAAAGGGGTTTCTGGAAACAAGGAGTTCATAATTCG 178 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 104 TGAGGGTTTCGTTTGATATCTGGAAAAAGGGGTTTCTGGAAACAAGGAGTTCATAGTTCG 163 Query 179 CGATCTTGATCTATCGATCTTCATTTATATATAAAAGCGTGAATGAGATTATGATGGAGT 238 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 164 CGATCTAGATCTATCGATCTTCATTTATATGTAAAAGCGTGAATGAGATTATGATGGAGT 223 Query 239 CGAAAGGTGGTAAAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 CGAAAGGTGGTAAAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCG 283 Query 299 GTTACAGCATTGAAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 GTTACAGCATTGAAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCT 343 Query 359 ACTCAAACTGCTCCAAGAGGCCATCCTGAGTACCAGCGTGCACCGATCTTCATAATATAG 418 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 344 ACTCTAACTGCTCCAAGAGGCCATCCTGAGTACCAGCGTGCACCGATCTTCTTAATATAG 403 Query 419 TTATAGCTTTCTTTACTTTCCAGTTTATAATTTTCTTCTTTCAAAGCTCCTTTTCTGCTG 478 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 404 TTATAGCTTTCTTTACTTTCCAGTTTATAATTTTCTTCTTTCAAAGCTCCCTTTCTGCTG 463 Query 479 GTTCCCGGATCCAATCGTTCTCTCCTCCTACTACAAGTCCTGTCGCTCACACAACAAGGC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 GTTCCCGGATCCAATCGTTCTCTCCTCCTACTACAAGTCCTGTCGCTCACACAACAAGGC 523 Query 539 GAGATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCGAGGTGACTTTC 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 524 GAGATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCGAGGTTACTTTC 583 Query 599 TTTGAGCCAAGCATCTTTCAAGACTCCAAGGGACTGGGACTCCGTGCTCTGACCAAGTCC 658 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 584 TTTGAGCCAAGCATCTTTCAAGACTCCAAGGGACTGGGACTCCGTGCTCTTACCAAGTCC 643 Query 659 CAGCTTGATGAAATTCTTACACCTGCTGCATGCACGATCGTTTCATCTCTCTCCAACGAT 718 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 644 CAGCTTGATGAAATTCTTACACCTGCTGCATGCACGATCGTTTCTTCTCTCTCCAACGAT 703 Query 719 CAATTGGACTCTTACGTACTCTCTGAGTCCAGCTTCTTTGTCTACCCCTACAAAGTCATC 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 CAATTGGACTCTTACGTACTCTCTGAGTCCAGCTTCTTTGTCTACCCCTACAAAGTCATC 763 Query 779 ATCAAGACTTGCGGTACCACTAAGCTCCTCCTCTCTATCCCACCACTTCTAAAGCTGGCT 838 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 764 ATCAAGACTTGCGGTACCACGAAGCTCCTCCTCTCTATCCCACCACTTCTAAAGCTGGCT 823 Query 839 GGTGAGCTCTCTCTGAGTGTCAAGTCTGTGAAGTACACTCGCGGCTCCTTCCTCTGCCCC 898 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 824 GGTGAGCTCTCTTTGAGTGTCAAGTCTGTGAAGTACACTCGTGGCTCCTTCCTCTGCCCC 883 Query 899 GGAGGCCAGCCTTTTCCTCACCGCAGCTTCTCTGAAGAAGTCTCTGTTCTTGATGGGCAC 958 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884 GGAGGCCAGCCTTTCCCTCACCGCAGCTTCTCTGAAGAAGTCTCTGTTCTTGATGGGCAC 943 Query 959 TTTACTCAGCTGGGCTTGAACAGCGTAGCCTACTTGATGGGCAATGATGATGAGACTAAG 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 TTTACTCAGCTGGGCTTGAACAGCGTAGCCTACTTGATGGGCAATGATGATGAGACTAAG 1003 Query 1019 AAATGGCATGTCTATGCTGCCTCTGCCCAGGACTCCAGCAACTGCAACAACAATGTCTAC 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1004 AAATGGCATGTCTATGCTGCCTCTGCCCAGGACTCCAGCAACTGCAACAACAATGTCTAC 1063 Query 1079 ACTCTCGAGATGTGCATGACTGGTCTGGACAGAGAGAAAGCTGCTGTCTTCTACAAGGAT 1138 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1064 ACTCTCGAGATGTGCATGACTGGTCTGGACAGAGAGAAAGCTTCTGTCTTCTACAAGAAC 1123 Query 1139 GAAGCTGACAAGACTGGGTCAATGACTGATAACTCTGGAATCAGAAAGATCCTTCCCAAG 1198 ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| || Sbjct 1124 GAAGCTGACAAAACTGGGTCAATGACTGACAACTCTGGAATCCGAAAGATCCTTCCCCAG 1183 Query 1199 TCTGAGATCTGCGACTTTGAATTCGAGCCCTGCGGCTACTCTATGAACTCAATTGAAGGG 1258 || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1184 TCCCAGATCTGCGACTTTGAATTCGAGCCCTGTGGCTACTCTATGAACTCAATTGAAGGG 1243 Query 1259 GATGCAATCTCCACGATCCATGTGACCCCTGAAGATGGGTTTAGCTACGCTAGCTTCGAA 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1244 GATGCAATCTCCACGATCCATGTGACCCCTGAAGATGGGTTTAGCTACGCTAGCTTTGAA 1303 Query 1319 GCTGTGGGTTACGACTTCAACACCCTTGACCTTAGCCAGCTGGTGACAAGGGTTCTCTCT 1378 ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| Sbjct 1304 GCTGTGGGTTACGACTTCAACACTATTGACCTGAGCCAGCTGGTGACAAGGGTACTCTCT 1363 Query 1379 TGCTTCGAGCCCAAGCAATTCTCTGTAGCTGTGCACTCGAGCGTTGGAGCGAACTCATAC 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1364 TGCTTCGAGCCCAAGCAATTCTCTGTAGCTGTGCACTCGAGCGTTGGAGCGAACGCGTAC 1423 Query 1439 AAGCCAGAGATTACTGTAGACTTGGAAGACTATGGGTGCAGAGAGAGGACATTTGAGTCT 1498 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1424 AAGCCAGAGATCACTGTAGACTTGGAAGACTATGGGTGCAGAGAGAGGACATTTGAGTCT 1483 Query 1499 CTAGGAGAAGAGAGTGGAACAGTGATGTATCAGACGTTTGAGAAGCTTGGTAAGTACTGT 1558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1484 CTAGGAGAAGAGAGTGGAACAGTGATGTATCAGACGTTTGAGAAGCTTGGTAAGTACTGT 1543 Query 1559 GGATCGCCTAGATCTACCTTGAAGTGTGAATGGAGCAGCAACAATAGCTGCAGCAGCGAG 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1544 GGATCGCCTAGATCTACCTTGAAGTGTGAATGGAGCAGCAACAATAGCTGCAGCAGCGAG 1603 Query 1619 GACGAGAAGGACGAGGGAATCTAGCAGAAtttttcttcctaataactattttcgagcttt 1678 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1604 GACGAGAAGGACGAGGGAATCTAGCAGAATTTT-CTTCCTAATAACTATTTTCGAGCTTT 1662 Query 1679 ctgtttttg-ttctttctttttAAAAAACT 1707 ||||||||| || ||||||||||||||||| Sbjct 1663 CTGTTTTTGCTT-TTTCTTTTTAAAAAACT 1691 > Ahg488445 jgi|Araly1|488445|fgenesh2_kg.6__1579__AT5G15948.1 Length=1645 Score = 804 bits (435), Expect = 0.0 Identities = 908/1130 (80%), Gaps = 58/1130 (5%) Strand=Plus/Plus Query 541 GATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCGAGGTGACTTTCTT 600 |||| || | ||||| || || |||||||| |||||||| || || || || |||||||| Sbjct 426 GATGACCATGTCTGCTATTGGCTTCGAAGGCTACGAGAAGCGTCTTGAAGTTACTTTCTT 485 Query 601 TGAGCCAAG-CATCTTTCAAGACTC-CAAGGGACTGGGACTCCGTG-CTCTGACCAAGTC 657 |||||| | | |||||| ||| | ||||| | || || |||| || ||||||| || Sbjct 486 TGAGCCTGGTC-TCTTTCTTGACACTCAAGGTA-AAGGTCTACGTGCCT-TGACCAAATC 542 Query 658 CCAGCTTGATGAAATTCTTAC-ACCTGCTGCA-TGCACGATCGTTTCATCTCTCTCCAAC 715 ||| | ||||| |||||| | ||| |||| | ||||| ||||||||||||||||| ||| Sbjct 543 TCAGATCGATGAGATTCTT-CAACCAGCTG-AGTGCACTATCGTTTCATCTCTCTCGAAC 600 Query 716 GATCAATTGGACTCTTACGTACTCTCTGAGTCCAGCT-TCTTTGTCTACCCCTACAAAG- 773 ||||| | |||||||| || |||||||||||||| | ||||| ||| ||| ||| ||| Sbjct 601 GATCAGCTCGACTCTTATGTTCTCTCTGAGTCCAG-TCTCTTTATCTTCCCTTAC-AAGA 658 Query 774 TCATCATCAAGACTTGCGGTACCACTAAGCTCCTCCTCTCTATCCCA-CCACTTC-TAAA 831 | ||||||| |||||||| || |||||||||||||||||||| | |||| || | | Sbjct 659 TTGTCATCAAAACTTGCGGGACTACTAAGCTCCTCCTCTCTAT-TGAGCCAC-TCTTGAG 716 Query 832 GCTGGCTGGTGAGCTCTCTC-TGAGTGTCAAGTCTGTGAAGTACACTCGCGGCTCCTTCC 890 | | ||| ||||||| |||| ||| |||||| |||||| ||||||||| || ||||| Sbjct 717 GTTAGCTAGTGAGCTTTCTCTTGA-CGTCAAGGCTGTGAGGTACACTCGTGGAAGCTTCC 775 Query 891 TCTGCCCCGGAGGCCAGCCTTTTCCTCACCGCAGCTTCTCTGAAGAAGTCTCTGTTCTTG 950 |||| || ||||| || || || |||||||||| ||||||||||||||||||||| |||| Sbjct 776 TCTGTCCTGGAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTGCTTG 835 Query 951 ATGGGCACTTTACTCAGCTGGGCTTGAACAGCGTAGCCTACTTGATGGGCAATGATGATG 1010 |||| |||||| || || |||| |||| ||| || || ||||||||||||||||| |||| Sbjct 836 ATGGTCACTTTGCTAAGTTGGGTTTGAGCAGTGTTGCGTACTTGATGGGCAATGACGATG 895 Query 1011 AGACTAAGAAATGGCATGTCTA-TGCTGCCTCTGCCCAGGACT-CCAGCAACTGCAACAA 1068 | || |||||||||||||| || | |||| ||| | || | || |||| |||||| Sbjct 896 AAACCAAGAAATGGCATGTTTACT-CTGCTTCT--TC-TGA-TAACAACAACAACAACAA 950 Query 1069 CAATGTCTACACTCTCGAGATGTGCATGACTGGTCTGGACAGAGAGAAAGC-TGCTGTCT 1127 |||||||||||||||||||||||| |||||||||||||||| ||| || || | |||||| Sbjct 951 CAATGTCTACACTCTCGAGATGTGTATGACTGGTCTGGACAAAGACAAGGCAT-CTGTCT 1009 Query 1128 TCTACAAG---GA-TGAAGCTGACAAGACTGGGTCAATGACTGATAACTCTGGAATCAGA 1183 ||| |||| || | ||||| || | |||| || ||||||||||||||||| |||||| Sbjct 1010 TCTTCAAGAACGAGTCAAGCT--CA-G-CTGGTTCTATGACTGATAACTCTGGCATCAGA 1065 Query 1184 AAGATCCTTCC-CAAGTCTGAGATCTGCGACTTTGAATTCGAGCCCTGCGGCTACTCTAT 1242 ||||| ||||| ||| || | ||||| |||||||| || ||||| || |||||||| || Sbjct 1066 AAGATACTTCCTCAA-TCCCAAATCTGTGACTTTGAGTTTGAGCCATGTGGCTACTCAAT 1124 Query 1243 GAACT-CAATTGAAGGGGATGCAATCTCCACGATCCATGTGACCCCTGAAGATGGGTTT- 1300 |||| || | ||||| || ||||||||||| ||||||||||| || |||||||| ||| Sbjct 1125 GAACAGCA-TCGAAGGTGACGCAATCTCCACCATCCATGTGACTCCAGAAGATGG-TTTC 1182 Query 1301 AGCTACGCTAGCTTCGAAGCTGTGGGTTACGACTTCAACACCCTTG-ACCTT-AGCCAGC 1358 |||||||||||||| || || ||||| ||||| |||| || || || || || ||||| | Sbjct 1183 AGCTACGCTAGCTTTGATGCAGTGGGATACGATTTCA-CAACCATGGAC-TTGAGCCATC 1240 Query 1359 TGGTGACAAGGGTTCTCTCTTGCTTCGAGCCCAAGCAATTCTCTGTAGCTGTGCACTCGA 1418 |||| ||| ||| || ||||||||||||| |||||||||||||||||||| ||||| | Sbjct 1241 TGGTCTCAAAGGTACTAACTTGCTTCGAGCCAAAGCAATTCTCTGTAGCTGTCCACTCTA 1300 Query 1419 GCGTTGGAGCGAACTCA-TA-CAAGCCAGAGAT-TAC-TGTAGACTTGGAAGACTATGGG 1474 |||| | | | || | || || | | | | || ||| ||| | || || || | Sbjct 1301 GCGTCGCA-CAAAATGGGTATCACTCT-G-G-TCTATGTGTTGACCTAGACGATTACGAA 1356 Query 1475 TGCAGAGAGAGGACATTTGAGTCTCTAGGAGAAGAGAGTGGAACAGTGATGTATCAGACG 1534 |||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| | Sbjct 1357 TGCAGAGAGACAACAATGGAGTCTCTAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGG 1416 Query 1535 TTTGAGAAGCTTGGTAAGTACTGTGGATCGCCTAGATCTACCTTGAAGTGTGAATGGAGC 1594 |||||||||||||| ||||| ||||| || || ||||||||||||| ||||| |||||| Sbjct 1417 TTTGAGAAGCTTGGAAAGTATTGTGGTTCTCCGCGATCTACCTTGAAATGTGAGTGGAGC 1476 Query 1595 AGCAACAATAGCTGCAGCAGCGAGGACGAGAAGGACGA---GGGAATCTA 1641 ||||||| |||||||| |||||||||||||||||| || ||||||||| Sbjct 1477 AGCAACAGTAGCTGCAACAGCGAGGACGAGAAGGAGGAATAGGGAATCTA 1526 Score = 259 bits (140), Expect = 5e-68 Identities = 184/205 (90%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 191 ATCGATCTTCATTTATATATAAAAGCGTGAATGAGATTATGATGGAGTCGAAAGGTGGTA 250 ||| || ||| |||| ||| |||||||||||||||||||||||||| ||||||||||| | Sbjct 163 ATCAATATTCCTTTACATA-AAAAGCGTGAATGAGATTATGATGGAATCGAAAGGTGGCA 221 Query 251 AAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCGGTTACAGCATTG 310 | |||||||| |||| | |||||||||||||||||||| ||||| ||||||||||||| Sbjct 222 ATAAGAAGTCAAGCA-CA--AGTTCCTTATTTTACGAAGCACCCCTTGGTTACAGCATTG 278 Query 311 AAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCAAACTGCT 370 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 279 AAGACGTTCGTCCTTACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCG 338 Query 371 CCAAGAGGCCATCCTGAGTACCAGC 395 | |||||||| |||||||||||||| Sbjct 339 CTAAGAGGCCTTCCTGAGTACCAGC 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70466953250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5