BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02540.1 Length=1738 Score E Sequences producing significant alignments: (Bits) Value Ahg477488 jgi|Araly1|477488|fgenesh2_kg.3__189__AT3G02540.1 2643 0.0 Ahg494129 jgi|Araly1|494129|fgenesh2_kg.7__3562__AT5G38470.1 375 4e-103 > Ahg477488 jgi|Araly1|477488|fgenesh2_kg.3__189__AT3G02540.1 Length=1670 Score = 2643 bits (1431), Expect = 0.0 Identities = 1571/1639 (96%), Gaps = 7/1639 (0%) Strand=Plus/Plus Query 31 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCTTCTTCGCCTACC 90 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 19 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCCTCTTCACCTACC 78 Query 91 TACTCTCTTTCCCGAATTTATTTGCCGGCGGTGATCAATCAGAACGGGATTTTAGCCTGA 150 ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| || Sbjct 79 TACTCTCTTTCTCGAATTTATTTGCCGGCGGCGATCAATCCGAACGGGATTTTAGCCGGA 138 Query 151 GTAATCGGTCACTGGGAAGAGAATTTCGACGGTGAGAGAAGATGAAGATATTTGTGAAAA 210 ||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 139 GTAGTCGGTCACTGGGAAGGGAATTTGGCCGGTGAGAGAAGATGAAGATATTTGTGAAAA 198 Query 211 CTCTCAAGGGGACTCACTTCGAGATCGAAGTAAAACCCGAGGATTCGGTTGTTGATGTGA 270 ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct 199 CTCTCAAGGGGACTCACTTTGAGATCGAAGTAAAACTCGAGGATTCGGTTGCTGATGTGA 258 Query 271 AGAAGAACATAGAGAGTGTGCAGGGCGCAGATGTGTATCCTGCTGCAAAACAGATGCTTA 330 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 259 AGAAGAACATAGAGACTGTGCAGGGCGCAGATGTATATCCTGCTGCAAAACAGATGCTTA 318 Query 331 TTCACCAAGGTAAAGTGCTTAAAGATGAGACAACTATTGAGGAAAACAAAGTTGCTGAGA 390 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 319 TTCACCAAGGTAAAGTTCTTAAAGATGAGACTACTATTGAGGAAAACAAAGTTGCTGAGA 378 Query 391 ACAGTTTTATTGTCATTATGATGAACAAGAGTAAACCTGCTTCAGCTGCAGCATCTAGTG 450 |||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 379 ACAGTTTTATTGTCGTAATGATGAACAAGAGTAAACCTGCTTCAACTGGAGCATCTAGTG 438 Query 451 CATCTGCTGGCACATCGCAGGCCAAGTCGATACCTCCCTCAACATCACAGCCTTCAATTT 510 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 439 CATCTGCTGGCACAGCGCAGGCCAAGTCGACACCTCCCTCAACATCACAGCCTTCAATTT 498 Query 511 CCCCTCAGACTCCAGCTTCTGTATCAgcaccagtggcacctgcaccaacacgtccaccac 570 ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |||| Sbjct 499 CCCCTCAGACTCCAGCTTCTGTAGCAGCACCAGTGGCACCTGCACCGACACGTGCGCCAC 558 Query 571 cacctgcaccgacaccgacacctgcacctgTAGCTGCAACTGAAACTGTGACTACCCCTA 630 |||||| | | ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 559 CACCTG---C--C-CCGACACCTGCACCTGTAGCTGCAACTGAAACTGTGACTACACCTA 612 Query 631 TACCTGAACCTGTACCTGCTACTATATCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 690 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 613 TACCTGAACCTGTACCTGCTACTATACCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 672 Query 691 TGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 750 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673 CGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 732 Query 751 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGAGACTG 810 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 733 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGACACTG 792 Query 811 TTGTCCTTGCACTTCGTGCTGCATTTAACAACCCTGAAAGAGCTGTGGAATATCTTTATA 870 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 793 TTGTCCGTGCACTTCGTGCTGCATTTAACAACCCCGAAAGAGCTGTGGAATATCTTTATA 852 Query 871 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTCCTCCAGCTAGTGCCGGAC 930 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 853 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTGCTCCAGCTAGTGTCGGAC 912 Query 931 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 990 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 972 Query 991 ATGCAAATCCGTTAGATCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1050 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 ATGCAAATCCGCTAGACCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1032 Query 1051 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1092 Query 1111 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAACAGAACCCAAACT 1170 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1093 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAGCAGAACCCAAACT 1152 Query 1171 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1153 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1212 Query 1231 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1272 Query 1291 AGGCGATTCAAGTCACACATGAGGAACGTGAAGCCATTGAACGGCTTGAAGCGATGGGAT 1350 |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1273 AGGCGATTCAAGTCACACCTGAGGAACGCGAAGCAATTGAACGGCTTGAAGCGATGGGAT 1332 Query 1351 TTGAGAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1410 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1333 TTGACAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1392 Query 1411 CAAACTATCTTCTAGATCACATGCATGAATTCGAGGAATAAGCTTCTTCAGATTACTTTA 1470 |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct 1393 CAAACTATCTTCTAGATCACATGCATGAGTTCGAGGAATAACCTTCTTCAGTTTACTTTA 1452 Query 1471 CCTACTCTCTATCTTTCGCATTGGTCCATATGTTTTAGCTATATATGTGTGGGATGCCAA 1530 ||||||||||||||||| ||||||||||||||| ||| |||||||| |||||| |||||| Sbjct 1453 CCTACTCTCTATCTTTCCCATTGGTCCATATGTGTTACCTATATATTTGTGGG-TGCCAA 1511 Query 1531 ATCCATGACCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCAGTTTAAAATGAAGTT 1590 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1512 GTCCATGATCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCGGTTTAAAATGGAGTT 1571 Query 1591 TGTCATGTGTTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATATCTTGTTCCAGTTAT 1650 | |||| || |||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1572 TATCATCTGCTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATCTCCCGTTCCAGTTAT 1631 Query 1651 TTTTGTTGAATTGGGGACA 1669 |||||| ||||||||||| Sbjct 1632 TTTTGTCAAATTGGGGACA 1650 > Ahg494129 jgi|Araly1|494129|fgenesh2_kg.7__3562__AT5G38470.1 Length=1382 Score = 375 bits (203), Expect = 4e-103 Identities = 583/761 (77%), Gaps = 48/761 (6%) Strand=Plus/Plus Query 705 GATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATTTAGAGAGTACCATT 764 ||||| || || |||||||| ||||| || | ||||||| || | ||||| || || Sbjct 451 GATGTGTATGGTCAAGCAGCGTCAAACCTTGTTGCTGGAACTACTCTAGAGTCCACTGTT 510 Query 765 CAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGAGACTGTTGTCCTTGCACTT 824 ||||| |||||||||||||||||||| | ||||| ||||| |||||||| | ||| || Sbjct 511 CAGCAAATTCTTGACATGGGTGGAGGTAGTTGGGACCGTGACACTGTTGTTCGTGCTCTG 570 Query 825 CGTGCTGCATTTAACAACCCTGAAAGAGCTGTGGAATATCTTTA-TACTGGGATCCCTGA 883 | ||||| || ||||| ||||||||||| || |||||||| || | | || ||||||| Sbjct 571 AGAGCTGCCTTCAACAATCCTGAAAGAGCCGTTGAATATCTGTACT-CAGGTATCCCTGC 629 Query 884 GCAAGCTGAAGTTCCACCAGTTGC-C-CGTCCTCCAGCTAGTGCCGGACAGCCTGCAAAT 941 ||||||||| | || |||||||| | | || ||| ||| || | |||||| |||||| Sbjct 630 TCAAGCTGAAATCCCGCCAGTTGCTCAAG-CC-CCATCTACTGGTGAACAGCCAGCAAAT 687 Query 942 CCTCCAGCACAGA-CTCAACAACCTGCAGCAGCACCCGCAA---GTGGTCCTAATGCAAA 997 |||| |||||| | | |||||| | || | | | | |||| ||||||| || ||||| Sbjct 688 CCTCAAGCACA-ACCCCAACAAGCAGCTCCGGTAGCTGCAACTGGTGGTCCAAACGCAAA 746 Query 998 TCCGTTAGATCTCTTCCCACAGGGCTTGCCAAATGTTGGA-GGAAATCCTGGTGCTGG-A 1055 ||| ||| | || ||||| |||||| |||| || || | | |||| ||||| | Sbjct 747 TCCATTAAACCTGTTCCCCCAGGGCATGCCCGCTG-CAGATGCTGCTGCTGGAGCTGGTA 805 Query 1056 ACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAG-CTCTGCGAGCAATGGTGCAAGC 1114 | ||||| ||| |||| ||||| || |||||||||| || ||||||| ||||| ||||| Sbjct 806 A-TCTTGATTTCCTGCGTAACAGTCAGCAGTTCCAAGCCT-TGCGAGCTATGGTACAAGC 863 Query 1115 AAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAACAGAACCC-AAACTTGA 1173 |||||| ||| |||| ||||| ||||||||||| || || ||||| ||||| | |||| Sbjct 864 AAACCCACAAATTCTACAGCCTATGCTTCAGGAGCTCGGTAAACAAAACCCGCAGCTTG- 922 Query 1174 TGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTGAAG 1233 |||| | |||||||| ||||| ||||||||| ||||||| || ||||| ||||| || | Sbjct 923 TGCGACTAATTCAAGAGCACCAGGCTGACTTCCTACGCTTGATAAATGAGCCCGTCGAGG 982 Query 1234 GAGGGGGAGAAAG---TGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1290 || | ||||| | ||| || | |||| || || || |||| | || || Sbjct 983 GA-GAAGAGAATGTTATGG-AA-C-AGTTGG---AA--GCAGC---AATG-C-CA--CA- 1025 Query 1291 AGGC-GATTCA-AGTCACACATGAGGAACGTGAAGCCATTGAACGGCTTGAAGCGATGGG 1348 | || | || | ||| |||| ||| || |||||||||||||||||||||||||||||||| Sbjct 1026 A-GCTG-TT-ACAGTTACACCTGAAGAGCGTGAAGCCATTGAACGGCTTGAAGCGATGGG 1082 Query 1349 ATTTGAGAGAGC-ATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAG-TTG 1406 ||||| | || || ||| || ||||||||||||||||| |||||||||||||| ||| Sbjct 1083 GTTTGATCGTGCGAT-GGTCTTAGAAGTGTTCTTTGCGTGTAACAAGAATGAAGAACTTG 1141 Query 1407 GCTGCAAACTATCTTCTAGATCACATGCATGAATTCGAGGA 1447 | || || || |||||||||||||||||||| || ||||| Sbjct 1142 -CAGCGAATTACCTTCTAGATCACATGCATGAGTTTGAGGA 1181 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65210499440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5