BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02555.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477491 jgi|Araly1|477491|fgenesh2_kg.3__192__AT3G02555.1 959 0.0
> Ahg477491 jgi|Araly1|477491|fgenesh2_kg.3__192__AT3G02555.1
Length=746
Score = 959 bits (519), Expect = 0.0
Identities = 670/739 (91%), Gaps = 26/739 (4%)
Strand=Plus/Plus
Query 33 TCACCCTTATCGCCGCTGTTTCGTCTTGAACAATCAGATTAG-GTGTTCTTCTGTGGATA 91
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1 TCACCCTTATCGCCGCTGTTTCGTCTTGAACAAGCAGATTAGAG-GTTCTTCTGTGGATA 59
Query 92 AAAGATGAATCATTGTAGCCTTCAGCAGAATGCATTCTTGTCTCGTGAAGAATCGAGAGG 151
||| |||||||||||||||||||||||||| || ||| |||||||||| |||||||||||
Sbjct 60 AAAAATGAATCATTGTAGCCTTCAGCAGAACGCCTTCATGTCTCGTGACGAATCGAGAGG 119
Query 152 ATTTGTTCCTATCTATTCTCATCCAGTGGACTCTGTTGTTTGCCCTAAGCCCCGTCGTGC 211
||||||||||||||||| | ||||| |||||||||||||||| |||||||| ||||||||
Sbjct 120 ATTTGTTCCTATCTATTGTTATCCAATGGACTCTGTTGTTTGTCCTAAGCCTCGTCGTGC 179
Query 212 AAACAACGTTATTCGTCCCTTTAGATTACATTTTAGTCTTTCAGGAGCTGATGATGTATG 271
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CAACAACGTTATTCGTCCCCTTAGATTACATTTTAGTCAATCAGGAGCTGATGATGTATG 239
Query 272 TGATTCTAAAGCCGGGGAAGATCTTTTGGACATATTTCGTAGAAAGGAATCAGTATCATC 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGATTCTAAAGCCGGGGAAGATCTTTTGGACATATTTCGTAGAAAGGAATCAGTATCATC 299
Query 332 TAGATCACCCCCATTTTTCCTTGGGTCTCCCCCTAGCCGAGCAGCAAACCCGTTAGCTCA 391
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TACATCACCCCCATTTTTTCTTGGGTCTCCCCCGAGCCGAGCAGCAAACCCGTTAGCTCA 359
Query 392 AGATGCACGCTTTGGAGATGAGAAACTCAACACTGTCTCACCCTCACTCTCCCCTCTTCT 451
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
Sbjct 360 AGATGCACGCTTTGGAGTTGAGAAACTCAACACTGTCTCACCCTCACTCTCACCTCGTGT 419
Query 452 CCCATCTGCATCTCGTGTTAAAAGTGGTTGTGGTAGAATGAAGTTTGGGGTGAAACCAGC 511
| | | | | | | | || | |||||||||||||||||||||||||||||||||
Sbjct 420 CAAAGCAGGA----G-G--AGGAG-G-TTGTGGTAGAATGAAGTTTGGGGTGAAACCAGC 470
Query 512 AACTGTTAGAGTAGAAGGGTTTGATTGCTTGAACAGGGACCGCCCAAACTCAAGTATCCC 571
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 471 AACTGTTAGAGTAGAAGGGTTTGATTGCTTGAACAGGGACCGCCAAAACTCAAGCATTCC 530
Query 572 TGCCATGGCCTAGAAAGAAGAAGAAGGAACAAAGAGGATTCACAAAGTGTACATAAAATC 631
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 531 TGCCATGGCCTAGAAAGAAGAAGAAGGAACAAAGAG-ATTCACAAAGTGTACATAAGATC 589
Query 632 CAGACTCAAAGACTCCATTTTTT-GAAG-AAGTATATATAGTTTTGCAGAAGAAGAGGAA 689
|||| |||| |||| ||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 590 CAGAATCAA-GACT--ATTTTTTTGAAGCAAGTATATATATTTTTGCAGAAGAAGAGGGG 646
Query 690 AAGGAAGATTAACGATCGCTCAAG-CTTTTACCGCAGTTTTCTGTGATTATGATGAGGTT 748
||||||||| || | || |||||| ||||||||||||||||||| || || | | ||
Sbjct 647 AAGGAAGATCAAAGTTCACTCAAGGCTTTTACCGCAGTTTTCTG--AT---GA-G-G-TT 698
Query 749 CAATGTTGTGTATATATAT 767
|| || |||||||||||||
Sbjct 699 CAGTGGTGTGTATATATAT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5