BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02580.1 Length=1171 Score E Sequences producing significant alignments: (Bits) Value Ahg477495 jgi|Araly1|477495|fgenesh2_kg.3__196__AT3G02580.1 1465 0.0 Ahg477496 jgi|Araly1|477496|fgenesh2_kg.3__197__AT3G02590.1 741 0.0 Ahg927748 jgi|Araly1|927748|scaffold_300205.1 468 5e-131 > Ahg477495 jgi|Araly1|477495|fgenesh2_kg.3__196__AT3G02580.1 Length=1019 Score = 1465 bits (793), Expect = 0.0 Identities = 877/919 (95%), Gaps = 0/919 (0%) Strand=Plus/Plus Query 86 ATCAATCCGGCGAATCTTCTTTCGTTTTCCGGCACCGATCTCGGTGGATCTCCGATTCAC 145 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATCAAGCCGGCGAATCTTCTTTCGTTTTCCGGCACCGATCTCGGTGGATCTCCGATTTAA 60 Query 146 ATGGCGGCGGATAATGCTTATCTGATGCAGTTTGTTGACGAAACCTCTTTTTACAACCGA 205 ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 ATGGCAGCGGACAATGCGTATCTGATGCAGTTTGTCGACGAAACCTCTTTTTACAACCGA 120 Query 206 ATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCCTTACCTCATTTTCTCCAG 265 |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 121 ATCGTTTTGAGTCATCTTTTGCCGGCGAATCTGTGGGATCCCTTACCTCATTTTCTCCAG 180 Query 266 ACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTCATCTCCGGTTTCCTCTGG 325 |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 181 ACATGGCTTCGAAATTACCTCGCCGGAACCCTACTCTACTTCATCTCCGGCTTCCTCTGG 240 Query 326 TGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCCCAAAGATGCAATTCCTACA 385 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 241 TGCTTCTACATCTATTACCTCAAAATCAACGTTTACCTTCCCAAAGATGCCATTCCTACA 300 Query 386 ATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGGCTATGCCATGGTACACTCTT 445 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 301 ATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGGCTATGCCTTGGTATACTCTT 360 Query 446 CTTCCAACTGTCTCCGAGAGTATGATTGAACGTGGTTGGACCAAATGTTTTGCTAGCATA 505 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 361 CTTCCAACTGTCTCCGAGAGTATGATTGAACGTGGTTGGACCAAGTGTTTCGCTAGCATA 420 Query 506 GGCGAATTCGGCTGGATTCTGTATTTTGTTTACATCGCCATCTATCTTGTTTTCGTTGAG 565 ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| Sbjct 421 GGCGAATTCGGCTGGATCCTCTATTTTGTTTACATTGCCATCTATCTTGTTTTCGTTGAG 480 Query 566 TTTGGTATTTATTGGATGCACAGAGAGCTTCATGACATTAAGCCTCTCTATAAGTATCTC 625 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 481 TTTGGTATTTATTGGATGCACAGAGAGCTTCATGATATCAAGCCTCTCTATAAGTATCTC 540 Query 626 CATGCCACCCATCATATCTACAACAAGCAGAATACACTCTCTCCATTTGCCGGGCTTGCA 685 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 541 CATGCGACCCATCATATCTACAACAAGCAAAATACACTCTCTCCATTTGCCGGGCTTGCG 600 Query 686 TTTCACCCAGTAGACGGGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTG 745 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTTCACCCAGTAGATGGGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTG 660 Query 746 CCAATTCATTTCACAACTCATATAGGTCTTTTGTTCATGGAAGCGATATGGACGGCGAAC 805 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 661 CCAATTCATTTCACAACCCATATAGGTCTTTTGTTCATGGAAGCGATATGGACAGCGAAC 720 Query 806 ATCCATGACTGCATCCATGGCAACATCTGGCCAGTAATGGGTGCAGGATACCATACGATA 865 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 721 ATCCATGACTGCATCCACGGCAACATCTGGCCTGTAATGGGTGCAGGATACCATACTATA 780 Query 866 CACCACACGACATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTT 925 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CACCACACAACATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTT 840 Query 926 GGCTCTCTTAGGGATCCTCTCTTAGAAGAAGATGACAACAAAGACAGCTTCAAGAAAGCA 985 ||||| |||| ||| ||||| ||||||||||||| ||||||||| |||| ||||||||| Sbjct 841 GGCTCCCTTAAGGACCCTCTTTTAGAAGAAGATGGCAACAAAGATAGCTCCAAGAAAGCT 900 Query 986 GAGTGAGAATGCCCACTTG 1004 ||||||||||||||||||| Sbjct 901 GAGTGAGAATGCCCACTTG 919 > Ahg477496 jgi|Araly1|477496|fgenesh2_kg.3__197__AT3G02590.1 Length=855 Score = 741 bits (401), Expect = 0.0 Identities = 680/807 (84%), Gaps = 49/807 (6%) Strand=Plus/Plus Query 188 ACCTCTTTTTACAACCGAATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCC 247 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 43 ACCTCTTTTTACAACCGAATGGTTCTGAGTCACCTTTTGCCGGCGAATCTATGGGAACCT 102 Query 248 TTACCTCATTTTCTCCAGACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTC 307 ||||| ||||| || |||||||||||||| || ||||||||||||| | |||| |||||| Sbjct 103 TTACCACATTTCCTTCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTC 162 Query 308 ATCTCCGG-TTTCCTCTGGTGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCC 366 |||||||| ||| || ||||||||||||||||||||||||||| |||||||||| | ||| Sbjct 163 ATCTCCGGCTTT-CTTTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTA-CGTCC 220 Query 367 C-AAAGATGCAATTCCTACAATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGG 425 | |||||| | |||||||||| ||||||||||| ||||||||| | |||||||||||| Sbjct 221 CAAAAGATTCCATTCCTACAAGAAAGGCTATGCTTTTGCAAATATACATGGCAATGAAGG 280 Query 426 CTATGCCATGGTACACTCTTCTTCCAACTGTCTCCGAG-AGTATGATTGAACGTGGTTGG 484 ||||||| |||||||||||||||||| ||||||| ||| | ||||| || | ||||||| Sbjct 281 CTATGCCTTGGTACACTCTTCTTCCAGCTGTCTCTGAGTA-CATGATCGAGCATGGTTGG 339 Query 485 ACCAAATGTT-TTGCTAGCA-TAGGCGAATTCGGCTGGATTCTGTAT-TTTG-TTTACAT 540 |||||||||| | ||| || | | | | ||| |||| ||| || | |||| | ||||| Sbjct 340 ACCAAATGTTACT-CTA-CACTTGACCATTTCAACTGG-TTC-GTCTGTTTGCTCTACAT 395 Query 541 CGC-CATCTATCTTGTTTTCGTTGAGTTTGGT-ATTTATTGGATGCACAGAGAGCTTCAT 598 || | ||||||||||||| ||||||||| | ||||||||| | |||| |||||||||| Sbjct 396 AGCTC-TCTATCTTGTTTTGGTTGAGTTT-ATGATTTATTGGGTTCACAAAGAGCTTCAT 453 Query 599 GACATTAAGCCTCTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAAT 658 ||| |||| |||||||||| |||||||||| ||||| ||||| |||||||| || || Sbjct 454 GACTTTAATTTTCTCTATAAGCATCTCCATGCGACCCACCATATGTACAACAAACAAAAC 513 Query 659 ACACTCTCTCCATTTGCCGGGCTTGCATTTCACCCAG-TAGACGGGATACTTCAGGCTGT 717 |||||||| |||||||||||||| ||||||||||| | | |||||||||||||||||||| Sbjct 514 ACACTCTCCCCATTTGCCGGGCTCGCATTTCACCC-GTTGGACGGGATACTTCAGGCTGT 572 Query 718 ACCGCA--TG-T---G--A-T----A-G----CGCTGTTTATAGTGCCAATTCAT-TTCA 758 |||||| || | | | | | | |||||||||||||||| |||||| | | Sbjct 573 ACCGCACGTGATAGCGCCAGTGCCGATGATATCGCTGTTTATAGTGCCGATTCATCAT-A 631 Query 759 CAACTCATATAG-GTCTTTTGTTCATGGAAGCGATATGGACGGCGAA-CATCCATGACTG 816 ||| ||| | | |||||||||| | |||| ||||||||| || || ||||||||| || Sbjct 632 TAACACAT-TTGAGTCTTTTGTTTTTTGAAGGGATATGGACAGC-AAGCATCCATGATTG 689 Query 817 CATCCATGGCAACATCTGGCC-AGTAATGGGTGCAGGATACCATACGATACACCACACGA 875 ||||||||| ||||| ||||| | ||||||| |||||||||||||| |||||||| |||| Sbjct 690 CATCCATGGTAACATTTGGCCTA-TAATGGGAGCAGGATACCATACCATACACCATACGA 748 Query 876 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCTCTTA 935 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 749 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCCCTTA 808 Query 936 GGGATCCTCTCTTAGAAGAAGATGACA 962 ||| |||| | | || |||||| |||| Sbjct 809 GGGTTCCT-T-T-AGCAGAAGAAGACA 832 > Ahg927748 jgi|Araly1|927748|scaffold_300205.1 Length=730 Score = 468 bits (253), Expect = 5e-131 Identities = 446/536 (83%), Gaps = 25/536 (5%) Strand=Plus/Plus Query 438 ACACTCTTCTTCCAACTGTCTCCGAG-AGTATGATTGAACGTGGTTGGACCAAATGTT-T 495 ||| |||||||||| |||| || ||| | |||||| || | |||||||||| |||||| Sbjct 166 ACAGTCTTCTTCCAGCTGTATCTGAGTA-TATGATCGAGCATGGTTGGACCCAATGTTAC 224 Query 496 TGCTAGC-ATAGGCGAATTCGGCTGGATT---CTGTATTTTGTTTACATCGC-CATCTAT 550 | ||| | || | | | ||| |||| || ||||| | | ||||| | | ||||| Sbjct 225 T-CTA-CAATTGACCATTTCAACTGG-TTCCACTGTA--TCCTCTACATAACTC-TCTAT 278 Query 551 CTTGTTTTCGTTGAGTTTGGTATTTATTGGATGCACAGAGAGCTTCATGACATTAAGCCT 610 |||| ||| ||||||||||| |||||||||| |||| |||||||||||||| ||| | Sbjct 279 CTTGCTTTAGTTGAGTTTGGGGTTTATTGGATTCACAAAGAGCTTCATGACAATAAATTT 338 Query 611 CTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAATACACTCTCTCCA 670 ||||||||| |||||||||| |||| ||| |||||||||||||| || ||| |||||||| Sbjct 339 CTCTATAAGCATCTCCATGCGACCCGTCACATCTACAACAAGCAAAACACAATCTCTCCA 398 Query 671 TTTGCCGGGCTT-GCATTTCACCCAG-TAGACGGGATACTTCAGGCTGTACCGCATGTGA 728 ||||| ||| || ||||| || || | | ||||||||| ||||| || |||||||||||| Sbjct 399 TTTGCTGGG-TTCGCATTCCATCC-GTTGGACGGGATAATTCAGTCTTTACCGCATGTGA 456 Query 729 TAGCGCTGTTTATAGTGCCAATTCATTTCACAACTCATATAG-GTCTTTTGTTCAT-GGA 786 ||||||||||||||||||| |||||| ||| ||| ||| | | | |||||| || | ||| Sbjct 457 TAGCGCTGTTTATAGTGCCGATTCATCTCATAACACATCT-GTGCCTTTTG-TCTTCGGA 514 Query 787 AGCGATATGGACGGCGAACATCCATGACTGCATCCATGGCAACATCTGGCCAGTAATGGG 846 || ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 515 AGGGATATGGACAGCAAACATCCATGACTGCATCCACGGCAACATCTGGCCAGTAATGGG 574 Query 847 TGCAGGATACCATACGATACACCACACGACATACAAGCATAACTATGGTCATTATACCAT 906 ||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||| Sbjct 575 TGCAGGATACCATACGATACACCACACCACATACAAGCATAACTATGGCCACAAAACCAT 634 Query 907 ATGGATGGATTGGATGTTTGGCTCTCTTAGGGATCCTCTCTTAGAAGAAGATGACA 962 || |||||||||||||||||||||||||| || | ||| |||| |||||| |||| Sbjct 635 ATTGATGGATTGGATGTTTGGCTCTCTTAAGGCT--TCT-TTAGCAGAAGAAGACA 687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43688862882 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5