BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02600.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477497 jgi|Araly1|477497|fgenesh2_kg.3__198__AT3G02600.1 2141 0.0
Ahg929696 jgi|Araly1|929696|scaffold_302153.1 99.0 9e-20
> Ahg477497 jgi|Araly1|477497|fgenesh2_kg.3__198__AT3G02600.1
Length=1546
Score = 2141 bits (1159), Expect = 0.0
Identities = 1451/1578 (92%), Gaps = 76/1578 (5%)
Strand=Plus/Plus
Query 1 GATTAGATTGTCCCTAGGAGTCACTGTTATCGCTCTTTCAATTACTGTAATGTTGAATTT 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTAGATTGTCCCTA-GAGTCACTGTTATCGCTCTTTCAATTACTGTAATGTTGAATTG 59
Query 61 GGGTTTCATCTACTAACTAAGATGAAGTTTCTTGTCTCTTTCTGTCTCCCTCTTTCTTAA 120
|||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 60 GGGTTTCATCTACTAAATAAGATGAAGTTTCTTGTCTCTTTCTG----------TC---- 105
Query 121 TTCCTCTCTACTTTTCGGTTAATTGCTCCTCTTCAGCTAACTTTGGGGCTTTAAAGTGAT 180
| | | ||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 106 -T-C-C-CTA--TTTC--TTAATTGCTCCTCTTCAGCTAACTTTGGGGCTTTTAAGTGAT 157
Query 181 AGGATGGCTCGCTTCAGTTTTCCTTGTTTTCCAAATTTTGGGGGTTTTAATCAGGCTGTG 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 ACAATGGCTCGCTTCAGTTTTCCTTGTTTTCCAAATTTTGGGGGTTTTAATCAGGCTGTG 217
Query 241 ACAAATCGGGGGCCTGAGATTTCAGAAACTGCTGATAATTGGGTCTCACCATCTGACATT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ACAAATCGAGGGCCTGAGATTTCAGAAACTGCTGATAATTGGGTCTCACCATCTGACATT 277
Query 301 CCACTCATAGAACCTAATAGTAAAGAGCACAGGATGAGAGAGGCACAGCTAGGCGGTCAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 278 CCACTCATAGAACCTAATAGTAAAGAGCACAGGATGAGAGAGGCACAGCTTGGCGCTCAC 337
Query 361 ACTCTGAGGTCCCATGGAATGACTGTTGCAAGGACTCACATGCATGATTGGATCATTCTC 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ACTGTGAGGTCCCATGGAATGACTGTTGCAAGGACTCACATGCATGATTGGATCATTCTC 397
Query 421 GTGTTACTTGTTATTCTCGAGTGTGTACTCCTTATAATCCACCCATTTTATCGCTTTGTT 480
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 398 GTGTTACTTGTTATTCTTGAGTGCGTACTCCTTATAATCCACCCGTTTTATCGCTTTGTT 457
Query 481 GGTAAAGATATGATGACTGATCTAAGTTACCCGTTAAAGAGTAACACCGTACCAATTTGG 540
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 458 GGGAAAGATATGATGACTGATCTCAGTTACCCGTTAAAGAGTAACACCGTACCAATTTGG 517
Query 541 TCTGTCCCGGTATATGCGATGCTGTTACCTTTGGTAATCTTCATCTTTATCTACTTCCGT 600
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 518 TCTGTCCCGGTGTATGCGATGCTGTTACCTTTGGTAGTCTTCATATTTATCTACTTCCGT 577
Query 601 CGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTCTGTTCTGGTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTCTGTTCTGGTG 637
Query 661 ACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTC 697
Query 721 TGGCGTTGTTTTCCAGATGGCAAAGCTCTTTATGATAGCCTTGGAGATGTTATATGCCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TGGCGTTGTTTTCCAGATGGCAAAGCTCTTTATGATAGCCTTGGAGATGTTATATGCCAT 757
Query 781 GGTGATAAAAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATGG 840
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || |||
Sbjct 758 GGTGATAAAAGCGTCATAAGGGAAGGGCACAAAAGCTTCCCAAGCGGACACACCTCTTGG 817
Query 841 TCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTCAAGCATTTGAC 900
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 818 TCTTTTGCGGGTCTGGGATTTCTTTCGCTGTACTTATCGGGAAAGATTCAAGCATTTGAT 877
Query 901 GGTAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GGTAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTT 937
Query 961 GTCGGCATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGC 1020
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GTGGGTATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGC 997
Query 1021 TTGCTAGGTCTTG----CGATCTCTAC--AA-----TCT-GTTATCT-T---C---AATT 1061
||||||||| ||| | ||||||| || ||| || |||| | | ||||
Sbjct 998 TTGCTAGGT-TTGTTTTCTCTCTCTACTCAAAAAGGTCTTGTGATCTGTTATCTCCAATT 1056
Query 1062 TTTCCCGCCACCATATCACACCGAAGGTTGGGGACCATATGCTTACTTCCAAGTGTTGGA 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TTTCCCGCCACCATATCACACCGAAGGTTGGGGACCATATGCTTACTTCCAAGTGTTGGA 1116
Query 1122 GGCTGCGAGAGTGCAAGGAGCAGCGAATGGAGCAGTGCAGCAGCCGCCGCCCCAAGTTAA 1181
||| ||||||||||||||| | ||||||||||||||||||||||| || || ||||| |
Sbjct 1117 GGCGGCGAGAGTGCAAGGAACCGCGAATGGAGCAGTGCAGCAGCCACC-CC--AAGTTGA 1173
Query 1182 CAACGGTGAAGAAGAAGACGGTGGGTTTATGGGTTTACATTTGGTGGATAATCCGACTAT 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1174 TAACGGTGAAGAAGAAGACGGTGGGTTTATGGGTTTACATTTGGTGGATAATCCGACTGT 1233
Query 1242 GAGGAGAGAAGAGGATGTAGAAACTGGTAGAGGCTGAGATGAAGAAACTCTGAAGCTGGT 1301
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GAGGAGAGAAGAAGATGTAGAAACTGGTAGAGGCTGAGATGAAGAAACTCTGAAGCTGGT 1293
Query 1302 TTGGTTACTTGTTAGGACACTTTCTCTTGTTCTT-TTGATTCTTTGTTGGACAACTTTAG 1360
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||| ||
Sbjct 1294 TTGGTTACTTCTTAGGACACTTTCTCTTGTTCTTCTTGATTCTTTGTTTGACTACTTAAG 1353
Query 1361 TAGATTTCTCTAAGATAACT-A--A-----TAGAGTCGTTTGGTTTTGGTTTTGGTTT-- 1410
||||||||| |||||||||| | | || | |||||||||||||||||||||||
Sbjct 1354 TAGATTTCTGTAAGATAACTTAGTAACAACTACAATCGTTTGGTTTTGGTTTTGGTTTTG 1413
Query 1411 ----AAATGGATGACCGGT-TTTATGGTTCCGGTATTGGTG---GTTAAAGTTTATG-TT 1461
||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||
Sbjct 1414 GTTTAAATGGATGACCGGTATTTATGGGTCCGGTATTGGTATCCGTTAAAGTTTATGCTT 1473
Query 1462 TTTCAAAAAAGTTCACTGGATAAATGTAGCTTTATT-TT----CAATATTTTAAGGATTG 1516
||| || ||| |||||||||||||||||||||| || |||||||||||| ||||
Sbjct 1474 TTT-AA----GTTAACTGGATAAATGTAGCTTTATTATTTTTTCAATATTTTAAGAATTG 1528
Query 1517 AAATCGGATTTGAACTTA 1534
|||| |||||||||||||
Sbjct 1529 AAATTGGATTTGAACTTA 1546
> Ahg929696 jgi|Araly1|929696|scaffold_302153.1
Length=968
Score = 99.0 bits (53), Expect = 9e-20
Identities = 255/347 (73%), Gaps = 35/347 (10%)
Strand=Plus/Plus
Query 600 TCGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTC-TGTTCTGG 658
|||||||||||||||||||||||||||||| | || ||| || || ||| ||| || |
Sbjct 287 TCGAAGAGATGTTTATGATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGT-CTTG 345
Query 659 TGACAGCAGT-ACTTACCGATGCAAT-AAAGAATGCAGTTGGTCGACCACGTCCTGACTT 716
|||| | ||| || || ||| | || ||||| || |||||| | ||||| ||| ||||
Sbjct 346 TGACTGGAGTCACC-ACTGATTCCATCAAAGAC-GCTGTTGGTAGGCCACGACCTAACTT 403
Query 717 CTTCTGGCGTTGTTTTCC-AGATGGCAAAGCTC--TTT-AT--G-ATAGCCTTGGAGATG 769
||| | || |||||||| | |||||||| | ||| || | ||| | | | ||||
Sbjct 404 CTTTTACCGATGTTTTCCCA-ATGGCAAACCGAAATTTGATCCGGATA-C-TAAG-GATG 459
Query 770 TTATATGCCATGGTGATAAAA-GCGTCAT-AAGGGAAGGTCACAAAAGCTTTCCA-AGTG 826
|| | || ||||| | ||||| | | || || | ||||| |||| || ||||| ||||
Sbjct 460 TTGTGTGTCATGGAGTTAAAAAGA-TAATCAAAG-AAGGTTACAAGAG-TTTCCCTAGTG 516
Query 827 GACACACGTCATGGTCTTTTTCGGGTCTCGGA-TTTCTTTCGCTT--TACTTATCGGG-A 882
| ||||| || ||||| || | ||| | | | |||| | || | ||||||||||| |
Sbjct 517 GTCACACTTCGTGGTCCTTCGCTGGTTT-G-ACTTTCCTA-GCGTGGTACTTATCGGGTA 573
Query 883 AAGATTCAA-GCATTTGACGGTAA-AGGCCACGTTGCAAAGCTATGC 927
|| || ||| | ||||||| | || ||| ||||| || |||||||||
Sbjct 574 AA-AT-CAAAGTATTTGACAG-AAGAGGTCACGTGGCGAAGCTATGC 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5