BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02750.3 Length=2276 Score E Sequences producing significant alignments: (Bits) Value Ahg477517 jgi|Araly1|477517|fgenesh2_kg.3__218__AT3G02750.2 1748 0.0 > Ahg477517 jgi|Araly1|477517|fgenesh2_kg.3__218__AT3G02750.2 Length=2696 Score = 1748 bits (946), Expect = 0.0 Identities = 1043/1087 (96%), Gaps = 17/1087 (2%) Strand=Plus/Plus Query 1194 CAGCTGAGGCAGAGAGAATAAGAAAGTGTCGAGGACGAGTGTTTGCTCTTAGAGATGAAC 1253 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1620 CAGCTGAGGCAGAGAGAATAAGAAAGTGTCGAGGACGGGTGTTTGCACTTAGAGATGAAC 1679 Query 1254 CTGAAGTTTGTAGAGTTTGGCTGCCAAATTGTGACTCACCTGGACTTGCTATGGCACGTG 1313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 CTGAAGTTTGTAGAGTTTGGCTGCCAAATTGTGACTCACCTGGACTTGCTATGGCACGTG 1739 Query 1314 CTTTTGGTGACTTTTGCCTTAAAGATTTTGGCCTAATCTCTGTGCCTGATGTATCTTTCC 1373 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 CTTTTGGAGACTTTTGCCTTAAAGATTTTGGCCTAATCTCTGTGCCTGATGTATCTTTCC 1799 Query 1374 GTC-AGTTAACCGAAAAAGATGAGTTTATAGTGTTGGCTACAGATGGGATTTGGGATGTT 1432 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1800 GTCGA-TTAACCGAAAAAGATGAGTTTATAGTGTTGGCTACAGATGGGATTTGGGATGTT 1858 Query 1433 CTCTCAAATGAAGATGTAGTGGCGATTGTAGCTTCAGCTCCATCGCGCTCCTCTGCAGCA 1492 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 CTCTCAAATGAAGATGTAGTGGCGATTGTAGCTTCAGCTCCATCGCGCTCCTCTGCAGCT 1918 Query 1493 AGAGCTTTAGTCGAGTCTGCGGTCAGAGCTTGGAGATACAAATACCCGACTTCCAAAGTC 1552 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1919 AGAGCTTTAGTCGAGTCTGCAGTTAGAGCTTGGAGATACAAATACCCGACTTCCAAAGTC 1978 Query 1553 GATGACTGTGCCGCTGTTTGCTTGTATCTAGACTCCAGCAACACAAACGCCATATCTACA 1612 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1979 GATGACTGTGCCGCTGTTTGCTTGTATCTAGACTCCAACAACACAAACGCCATATCTACA 2038 Query 1613 GCTTCTTCCATCTCCAAACTTGAAGATGGAGAAGAAGAAGAACTAAAAGCCA-CGACTGA 1671 |||||||||||||||||||| ||||||| | | ||||||||||||||||| | | ||||| Sbjct 2039 GCTTCTTCCATCTCCAAACTGGAAGATG-A-A-GAAGAAGAACTAAAAGC-AGCAACTGA 2094 Query 1672 GGATGATGATGCATCAGGACCAAGCGGTCTAGGCCGTTCGAGTACTGTCAGGTCGGGGAA 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2095 GGATGATGATGCATCAGGACCAAGCGGTCTAGGCCGTTCGAGTACTGTCAGGACGGGGAA 2154 Query 1732 AGAGATTGCTCTCGACGAAAGTGAAACTGAGAAGCTGATAAAAGAAGCGGATAACTTGGA 1791 |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2155 AGAGATTGCTCTTGATGAAAGTGAAGCTGAGAAGCTGATAAAAGAAGCGGATAACTTGGA 2214 Query 1792 TTCAGAACCTGGAACAGAGTATTCTGCACTTGAAGGTGTTGCAAGAGTTAATACACTTTT 1851 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2215 TTCTGAACCTGGAACAGAGTATTCTGCACTAGAAGGTGTTGCAAGAGTTAATACACTTTT 2274 Query 1852 AAACTTACCAAGATTTGTGCCTGGAAAGTGAATAGAGAAAGAAGAGTTGAAGTG-AAGAA 1910 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 2275 AAACTTACCAAGATTTGTGCCTGGAAAGTGAAAAGAGAAAGAAGAGTTGAAGTGGAAGAA 2334 Query 1911 GTTGAGAGGTGATTAATGATATCAAA-TAAATCACCCAAGACAAGGTACTGTGtcttttt 1969 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2335 GTTGAGAGGTGATAAATGATATCAAAATAAATCACCCAAGACAAGGTACTGTGTCTTTTT 2394 Query 1970 gttcttttgtttttccttttcaactttctt-cattgatctctattctttttt-gAGTCAT 2027 |||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 2395 GTTCATTTGTTTTTCCGTTTCAACTTTCTTACATTGATCTCTATTCTTTTTTTGAGTCAT 2454 Query 2028 AATTCATTGGTTTTGGAACCTAAAtttttgtcagttttgtctttggtttatgtctttctc 2087 |||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| Sbjct 2455 AATTCATTGGTTTTGGAACCTAAATTTTTGTCAGTTTTGTCTTT--TAT-TGTCTTTCTC 2511 Query 2088 tcttgttaatgtttatgttgttttttggtcttgtcAGTAAAGAAGAGTGAAAAAACATCA 2147 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 2512 TCTTGTTGATGTTTATGCTGTTTTTTGGTCTTGTCAGTAAAGAAGAGTGAAAAA-CATCA 2570 Query 2148 CATCATGTAATAATGGCTTGTGTCTGTAATTCTGTGAATCCCCTCAGGCTTAATTTTGTC 2207 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2571 CATGATGTAATAATGGCTTGTGTCTGTAATTCTGTGATTCCCCTCAGGCTTAATTTTGTC 2630 Query 2208 AGTCTGTTGGGACAATTTCCTGTTTCTGTCTTTTCAAAAAGCTCCAATTCCA-GTTACAG 2266 |||||||||||| |||||||||||| | |||||||||||||||||||||||| || |||| Sbjct 2631 AGTCTGTTGGGAAAATTTCCTGTTTTTATCTTTTCAAAAAGCTCCAATTCCAAGT-ACAG 2689 Query 2267 AATTTGT 2273 ||||||| Sbjct 2690 AATTTGT 2696 Score = 1522 bits (824), Expect = 0.0 Identities = 906/945 (96%), Gaps = 7/945 (1%) Strand=Plus/Plus Query 149 AGAGATCTCTTTTGCATAGTTTGAATCATCATTGCTCTTTCCGGTGAGAATTGTGATCTA 208 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 683 AGACATCTCTTTTGCATAGTTTGAATCATCATTGCTCTTTGCGGTGAGAATTGTGATCTA 742 Query 209 AAGGTTCAATCTTTCTCGCTGGAGGACCGTCGGGGTGATTGTACCATTGTTGGTCTGGAG 268 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 743 AAGGTTCAATCTTTCTCGCTGGAGGACCGTGGGGGTGATTGTTCCATTGTTGGTCTGGAG 802 Query 269 TGCCTGCTCAATATAATCAGGGCCCTTAAAATGGGGTCCTGTTTATCTGCAGAGAGCAGG 328 ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 803 TGCCTTCTTAATATAATCAGGGCCCTTAGGATGGGGTCCTGTTTATCTGCAGAGAGCAGG 862 Query 329 AGCCCTAGACCGGGCTCTCCTTGCTCTCCTGCTTTTAGTGTGAGGAAGAGGAAGAACTCT 388 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 863 AGCCCTAGACCGGGCTCTCCTTGCTCTCCTGCTTTCAGTGTGAGGAAGAGGAAGAACTCT 922 Query 389 AAGAAGCGACCTGGTTCTAGGAACTCTTCCTTTGATTACCGGAGAGAAGAACCGTTGAAT 448 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 923 AAGAAGCGACCTGGTTCTAGGAACTCTTCCTTTGATTACAGAAGAGAAGAACCGTTGAAT 982 Query 449 CAGGTTCCGGGCCGGATGTTCTTGAATGGATCAACTGAGGTTGCTTGTATCTACACTCAA 508 ||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 983 CAGGTTCCGGGGCGCATGTTCTTGAATGGATCAAGTGAGGTTGCTTGTATCTTCACTCAA 1042 Query 509 CAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGAATTTTGGTTCGAGG 568 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1043 CAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGGATTTTGGTTCGAGG 1102 Query 569 ACAGATACAATCTTCTGTGGAGTGTTTGATGGACATGGTCCATATGGTCATATGGTTGCA 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1103 ACAGATACAATCTTCTGTGGAGTGTTTGATGGACATGGTCCATATGGTCATATGGTTGCA 1162 Query 629 AAGAGAGTCAGAGACAATCTTCCTCTCAAATTAAGTGCTTATTGGGAAGCAAAAGTACCA 688 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1163 AAGAGGGTTAGAGACAATCTTCCTCTCAAATTAAGTGCTTATTGGGAAGCAAAAGTACCA 1222 Query 689 GTTGAAGGTGTTCTTAAGGCAATCACCACCGACACTGTCAATAATGT-AACCAACATTAA 747 ||||||||||| || |||||||||||||| || || || |||||| | ||| |||||||| Sbjct 1223 GTTGAAGGTGTCCTAAAGGCAATCACCACAGAAACCGTTAATAAT-TCAACGAACATTAA 1281 Query 748 CAACCCTGAAGAtgctgctgctgctgctgctTTTGTCA-CTGCTGAAGAAGAACCTAGGA 806 |||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||| Sbjct 1282 CAACCCTGAAGA---TGCTGCTGCTGCTGCTTTTGT-ATCTGCTGAAGAAGAAACTAGGA 1337 Query 807 CATCTGCTGACATGGAGGAGGAGAACACAGAAACCCAACCGGAATTGTTTCAAACGCTGA 866 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 1338 CATCTGCTGACATGGAGGAGGAGAACACGGAATCCCAACCGGAATTGTTTCAAACGCTGA 1397 Query 867 AAGAGTCGTTTCTTAAGGCTTTTAAAGTTATGGATAGAGAGCTTAAATTCCATGGAAGTG 926 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1398 AAGAGTCGTTTCTTAAGGCTTTTAAAGTTATGGATAGAGAACTTAAATTCCATGGAAGTG 1457 Query 927 TTGACTGTTTCTGCAGTGGGACAACAGCTGTAACCTTGATCAAGCAGGGTCAGTATCTCG 986 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1458 TTGACTGTTTCTGCAGTGGGACAACAGCTGTAACCTTGATCAAGCAGGGTCAGTATCTCG 1517 Query 987 TTGTTGGAAATGTTGGGGATTCCAGAGCTGTAATGGGTACAAGAGACAGTGAAAATACTC 1046 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| Sbjct 1518 TTGTTGGAAATGTTGGGGACTCTAGAGCTGTAATGGGTACAAGAGACAGTGAAAATGCTC 1577 Query 1047 TTGTCGCTGTTCAACTAACTGTGGATCTTAAGCCAAATCTCCCAG 1091 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1578 TTGTCGCTGTTCAACTAACTGTGGATCTTAAGCCAAATCTCCCAG 1622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85703051250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5