BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02830.1 Length=1695 Score E Sequences producing significant alignments: (Bits) Value Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1 2357 0.0 Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1 318 7e-86 > Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1 Length=1649 Score = 2357 bits (1276), Expect = 0.0 Identities = 1426/1494 (95%), Gaps = 27/1494 (2%) Strand=Plus/Plus Query 1 TGGAGGTGAGACGAGAACGcttttttgc-ttttcgtc-tt-tctctctctct-t-tcttt 55 |||||||||||||||||||||||||||| |||||||| || ||||||||||| | ||||| Sbjct 1 TGGAGGTGAGACGAGAACGCTTTTTTGCTTTTTCGTCTTTCTCTCTCTCTCTCTCTCTTT 60 Query 56 cttcacta-cctctcacctctctgtttacacgattcttcttcttcttcttcttcttcttt 114 |||||||| |||||||||||||||||||||||| |||||| || Sbjct 61 CTTCACTACCCTCTCACCTCTCTGTTTACACGA------------------TTCTTC-TT 101 Query 115 agatgtcttcttcCTCCATTGTCATCTACCTCTCTACACTTCATTTTCTTGTTGGAAGAA 174 ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||| Sbjct 102 AGATGTCTTCTTCCTCCATTGTCATTTACCTATCTACACTTCATTTTCTTGTCGGAGGAA 161 Query 175 GATCGATTACCGGTGACTCATTCTTAGTGATGACAGTATAATGTCTGATGCTTATTatca 234 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 162 GATCGATTATCGGTGATTCATTCTTAGTGATGACAGTATAATGTCTGATGCTTATCATCA 221 Query 235 tcatcatcatcatcGGAGACATTCTTCCTCTTCACGTCTATGGATTTTAATGCCGGAGTT 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 TCATCATCATCATCGGAGACATTCTTCCTCTTCACGTCTATGGATTTTAATGCCGGAGTT 281 Query 295 CCCATGTCTTCTCTTTCACCTTTGATGAATCAAGATGCAATGTGGCAAATGAATTTGAGT 354 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 282 CCCATGTCTTCTCTTTCACCTTTAATGAATCAAGATGCAATGTGGCAAATGAATTTGAGT 341 Query 355 TCAGATGAAACAATGGAAACTGGTTCTTACCCTGAACGACCAGGAGAGCCTGATTGTTCT 414 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 342 TCAGATGAAACAATGGAAACTGGTTCCTACCCTGAACGACCAGGAGAGCCTGATTGTTCT 401 Query 415 TATTACATAAGAACTGGTCTTTGTAGATTTGGCTCTACTTGTCGGTTCAACCATCCTCGT 474 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 402 TATTACATAAGAACTGGACTTTGTAGATTTGGCTCTACTTGTCGGTTCAATCATCCTCGT 461 Query 475 GATCGGGAACTGGTTATAGCTACTGCAAGGATGAGAGGAGAATACCCTGAAAGGATTGGT 534 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 462 GATCGGGAACTGGTTATAGCCACTGCAAGGATGAGAGGAGAGTACCCTGAAAGGATTGGT 521 Query 535 CAGCCTGAATGCGAGTACTATTTGAAGACAGGAACCTGCAAGTTTGGAGTAACATGTAAG 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 CAGCCTGAATGCGAGTACTATTTGAAGACAGGAACCTGCAAGTTTGGAGTAACATGTAAG 581 Query 595 TTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGC 654 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 582 TTTCATCATCCTAGGAACAAAGCTGGTATTGCTGGAAGAGTCTCTCTCAATATGTTAGGC 641 Query 655 TATCCTCTACGCTCGAATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTGTAAA 714 |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 642 TATCCTCTCCGCTCGAATGAAGTTGATTGTGCTTATTTTCTAAGAACCGGACATTGTAAA 701 Query 715 TTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGGTTCCT 774 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 TTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGGTTCCA 761 Query 775 ACCTCAGGGCAACAGTCTTATCCTTGGTCAAGAGCTTCTTTTATTGCCAGCCCTCGTTGG 834 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 ACTTCAGGCCAACAGTCTTATCCTTGGTCAAGAGCTTCTTTTATTGCCAGCCCTCGTTGG 821 Query 835 CAAGATCCGTCTAGCTACGCTTCCTTAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGA 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 CAAGATCCGTCTAGCTACGCTTCCTTAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGA 881 Query 895 TGGAACCCTTACAGTGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAA 954 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 TGGAACCCTTACAGTGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAC 941 Query 955 AACTACAGAAATTTACAGCAGAACGAGACAATAGAGTCAGGCTCTCAGTCTCAAGGATCA 1014 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 942 AACTACAGAAACATACAGCAGAACGAGACAATAGAGTCAGGCTCTCAGTCTCAAGGGTCA 1001 Query 1015 TTCTCGGGTTACAATCCGGGATCCTCTGTTCCGCTAGGAGGGTATTATGCATTGCCGAGG 1074 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1002 TTCTCGGGTTTCAATCCGGGATCCTCTGTTCCGATAGGAGGGTATTATGCATTGCCGAGG 1061 Query 1075 GAAAATGTGTTCCCGGAGAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGT 1134 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 GAAAATGTGTTCCCGGAAAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGT 1121 Query 1135 GACTGCAAATTTGGCACAGTTTGCAAATTTCACCATCCTAGAGACAGACAAGCTCCTCCT 1194 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1122 GACTGCAAATTTGGCACAGTTTGCAAGTTTCACCATCCTAGAGACAGACAAGCTCCTCCT 1181 Query 1195 CCTGATTGTCTCTTAAGCTCCATTGGCCTCCCCTTACGCCCGGGAGAACCGTTGTGTGTG 1254 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1182 CCTGATTGTCTCTTAAGCTCCATTGGCCTCCCTTTACGCCCGGGAGAACCGTTGTGTGTG 1241 Query 1255 TTCTATACACGCTATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATG 1314 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 TTCTATACTCGATATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATG 1301 Query 1315 CGAGTATTCACATACGACAACACAGCTTCAGAGACAGATGAGGTAGTGGAAACATCAACA 1374 |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1302 AGAGTATTCGCATACGAGAACACAGCTTCAGAGACAGATGAGGTAGTGGAAACATCAACA 1361 Query 1375 GGGAAATCTAGAAGACTCTCTGTGTCTGAAACAAGACAAGCAGCAACAACATCCTCTGGT 1434 ||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1362 GGGCAATCCAGAAGACACTCTGTATCTGAAACAAGACAAGCAGCAACAACATCCTCTGGT 1421 Query 1435 AAAGACACTACCATTGATAATACACAGCAGTgaagaaacaaaggaagaagaaga 1488 ||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1422 AAAGATACTACCATTGATAATACACAGCAGTGAAGAAACAAA--AAGAAGAAGA 1473 Score = 305 bits (165), Expect = 6e-82 Identities = 171/174 (98%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1522 tttgatttttcaaaagaGGAATCTGTAAATTCTCATTTTCATTTAGTCTCTCAAGCATTT 1581 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1476 TTTGATTTTTCAAAAGAGGAATCTGTAAATTGTCATTTTCATTTAGTCTCTCAAGCATTT 1535 Query 1582 ATTAATAATGTATAGAGGTGATTTATACAACTGATCTTGATCTTGATCTGATCGCCATTG 1641 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1536 ATTAATAATGTATAGAGGTGATTTATACAACTGATCTTGATCTTGATCTGATGGCCATTG 1595 Query 1642 TTGTAATATTCTTTTGGCGAATCAGGTTCAATAAAATTGAAAGTAATTTCCCTC 1695 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1596 TTGTAATATTCTTTTGGCGAATCAGGTTGAATAAAATTGAAAGTAATTTCCCTC 1649 > Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1 Length=1490 Score = 318 bits (172), Expect = 7e-86 Identities = 271/319 (85%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 1019 CGGGTTACAATCCGGGATCCTCTGTTCCGCTAGGAGGGTAT-TATGCATTGCCGAGGGAA 1077 |||||| | || | ||| |||||||||||| |||| | |||||||| || || || Sbjct 897 CGGGTTTC-ATTCAGGAAACTCTGTTCCGCT---CGGGT-TCTATGCATTACCTAGAGAG 951 Query 1078 AATGTGTTCCCGGAGAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGTGAC 1137 ||||| ||||| || |||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 952 AATGTATTCCCAGAAAGACCAGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGAT 1011 Query 1138 TGCAAATTTGGCACAGTTTGCAAATTTCACCATCCTAGAGACAGACAAGCTCCTCCTCCT 1197 ||||||||||| ||||| ||||||||||| ||||| |||||||||||| | ||| ||||| Sbjct 1012 TGCAAATTTGGAACAGTCTGCAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCT 1071 Query 1198 GATTGTCTCTTAAGCTCCATTGGCCTCCCCTTACGCCCGGGAGAACCGTTGTGTGTGTTC 1257 |||||| |||||||||| |||||||||| ||||||| ||||||||| |||| |||||| Sbjct 1072 GATTGTGTCTTAAGCTCTGTTGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTC 1131 Query 1258 TATACACGCTATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATGCGA 1317 ||| | || ||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1132 TATTCGCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGA 1191 Query 1318 GTATTCACATACGACAACA 1336 || ||||| ||| |||||| Sbjct 1192 GTCTTCACTTACAACAACA 1210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63572618905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5