BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02870.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477531 jgi|Araly1|477531|fgenesh2_kg.3__232__AT3G02870.1 1334 0.0
> Ahg477531 jgi|Araly1|477531|fgenesh2_kg.3__232__AT3G02870.1
Length=920
Score = 1334 bits (722), Expect = 0.0
Identities = 813/857 (95%), Gaps = 5/857 (1%)
Strand=Plus/Plus
Query 133 AAAGCATCACTCTTTTCGT-CTTCTC-TCGAAAATGGCGGACAATGATTCTCTAGATCAG 190
|||||||||||| ||| | ||| || |||||||||||||||||||||||||||||||||
Sbjct 67 AAAGCATCACTC--TTCCTCCTT-TCATCGAAAATGGCGGACAATGATTCTCTAGATCAG 123
Query 191 TTTTTGGCTGCCGCCATTGATGCCGCTAAAAAAGCTGGACAGATCATTCGTAAAGGGTTT 250
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 124 TTCTTGGCTGCCGCCATTGATGCCGCTAAAAAAGCTGGACAGATTATTCGTAAAGGGTTT 183
Query 251 TACGAGACTAAACATGTTGAACACAAAGGCCAGGTGGATTTGGTGACAGAGACTGATAAA 310
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TACGAGACCAAACATGTTGAACACAAAGGCCAGGTGGATTTGGTGACAGAGACTGATAAA 243
Query 311 GGATGTGAAGAACTTGTGTTTAATCATCTCAAGCAGCTCTTTCCCAATCACAAGTTCATA 370
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 244 GGATGTGAAGAACTCGTGTTTAACCATCTCAAGCAGCTTTTTCCCAATCACAAGTTCATA 303
Query 371 GGAGAAGAAACTACAGCTGCATTTGGTGTGACAGAACTAACTGACGAACCAACTTGGATT 430
|||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||
Sbjct 304 GGAGAAGAAACTACAGCTGCATATGGTGTGACAGAATTAACAGACGAGCCAACTTGGATT 363
Query 431 GTTGATCCTCTTGATGGAACAACCAATTTCGTTCACGGGTTCCCTTTCGTGTGTGTTTCC 490
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 364 GTTGATCCTCTTGATGGAACAACAAATTTCGTTCACGGGTTCCCTTTTGTGTGTGTTTCC 423
Query 491 ATTGGACTTACGATTGGAAAAGTCCCTGTTGTTGGAGTTGTTTATAATCCTATTATGGAA 550
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 424 ATTGGACTTACGATTGGAAAAGTCCCTGTGGTTGGCGTTGTTTATAATCCTATTATGGAT 483
Query 551 GAGCTATTCACCGGTGTCCAAGGGAAAGGAGCATTCTTGAATGGAAAGCGAATCAAAGTG 610
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 484 GAGCTATTCACCGGTGTCCAAGGGAAAGGAGCATTCTTGAATGGAAAGCCAATTAAAGTG 543
Query 611 TCAGCTCAAAGCGAACTTTTAACCGCTTTGCTCGTGACAGAGGCGGGTACTAAACGAGAT 670
||| |||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 544 TCAACTCAGAGCGAACTTGTAACCGCTTTGCTCGTAACAGAGGCGGGTACTAAACGTGAT 603
Query 671 AAAGCTACATTAGACGATACAACCAACAGAATCAACAGTTTGCTAACCAAGGTCAGGTCC 730
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 604 CAAGCTACATTAGATGATACAACCAATAGAATCAACAGTTTGCTAACCAAGGTTAGGTCC 663
Query 731 CTTAGGATGAGTGGTTCGTGTGCACTGGACCTCTGTGGCGTTGCGTGTGGAAGGGTTGAT 790
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTTAGGATGAGTGGCTCGTGTGCACTGGACCTCTGTGGCGTTGCGTGTGGAAGGGTTGAT 723
Query 791 ATCTTCTACGAGCTCGGTTTCGGTGGTCCATGGGACATTGCAGCAGGAATTGTTATCGTG 850
|||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 724 ATCTTCTATGAACTCGGTTTCGGTGGTCCATGGGACATTGCAGCCGGAATTGTAATCGTT 783
Query 851 AAAGAAGCTGGTGGACTCATCTTTGATCCATCCGGTAAAGATTTGGACATAACATCGCAG 910
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 784 AAAGAAGCTGGTGGACTCATTTTTGATCCATCCGGTAAAGATTTGGACATTACATCGCAG 843
Query 911 AGGATCGCGGCTTCAAACGCTTCTCTCAAGGAGTTATTCGCTGAGGCGTTGCGGCTTACA 970
|||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 844 AGGATCGCGGCTTCCAACTCTTCTCTCAAAGAGTTATTCGCAGAGGCGTTGCGGCTTACA 903
Query 971 GGGGCATGAAGTCATCT 987
|||||||||||||||||
Sbjct 904 GGGGCATGAAGTCATCT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5