BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02875.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477533 jgi|Araly1|477533|fgenesh2_kg.3__234__AT3G02875.1 2231 0.0
> Ahg477533 jgi|Araly1|477533|fgenesh2_kg.3__234__AT3G02875.1
Length=1425
Score = 2231 bits (1208), Expect = 0.0
Identities = 1354/1426 (95%), Gaps = 4/1426 (0%)
Strand=Plus/Plus
Query 68 AAAAGAAATCAGAATGGATTTCTCAGGGAGCTTCTTTGTCATCTTCGTTACCTTCTTCTT 127
|||| ||| ||||||| |||||||||||||||||||| || ||| ||| |||||||||||
Sbjct 2 AAAAAAAAACAGAATGAATTTCTCAGGGAGCTTCTTTCTCTTCTGCGTCACCTTCTTCTT 61
Query 128 TCTCCCTCC-TCTGTCTTCAGCTGGGAGCTACGATTCTGGTTCGGGTCTCGAGTCACTCG 186
|||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 62 TCTCCC-CCTTCTGTCTTTAGCTGGGAGCTATGATTCTGGTTCGGGTCTCGAGTCACTCG 120
Query 187 CTCGCGGGATGCTTCATTCAGCCAAGGATCCTGAGTTCTTCGAGTGGATGAGAGGAATTA 246
|||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGTGGGATGCTGGATTCAGCGAAGGATCCTGAGTTCTTCGAGTGGATGAGAGGAATTA 180
Query 247 GGAGAAAGATTCATGAGAACCCAGAGACAGGGTTTCAGGAGTTCAAAACGAGTCAACTCG 306
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 181 GGAGAAAAATTCACGAGAACCCGGAGACAGGGTTTCAGGAGTTCAAAACGAGTCAACTTG 240
Query 307 TTCGAGACGAGCTTGACTCGCTTGGAGTGAAGTATAAGTATCCTGTGGCGAAGACTGGCG 366
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 241 TTCGAGACGAGCTTGACTCGCTCGGAGTGAAGTATAAGTATCCTGTGGCGAAGACTGGTG 300
Query 367 TCGTCGCTTGGATCGGATCCTGTTCGAAACCTGTTTTCGGACTTAGAGCCGACATGGACG 426
|||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 301 TCGTGGCTTGGATCGGATCCGGTTCGATGCCTGTTTTCGGACTTAGAGCCGACATGGACG 360
Query 427 CACTTCCGTTACAGGAATTAGTGGAATGGGAATCGAAAAGTAAAGTAGATGGAAAGATGC 486
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 361 CACTTCCGTTACAGGAATTAGTGGAGTGGGAATCGAAGAGTAAAGTAGATGGAAAGATGC 420
Query 487 ATGCTTGTGGTCATGATACTCATGTTGCTATGCTTCTTGGTGCTGCTAAGCTTCTTCAAA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGCTTGTGGTCATGATACTCATGTTGCTATGCTTCTTGGTGCTGCTAAGCTTCTTCAAA 480
Query 547 CCACAAAACACCTCATCAAGGGGACAGTAAAACTTGTGTTTCAACCAGGCGAGGAAGGTT 606
|| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 481 ACAGAAAACACCTCATCAAGGGGACTGTGAAACTTGTGTTTCAACCAGGCGAGGAAGGTT 540
Query 607 ATGCAGGTGCTTATGAAATGCTAAAAGACGAGATTCTAGACGACTTAGATGGGATACTCA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 ATGCAGGTGCTTATGAAATGCTAAAAGACGAGATTCTAGACGACTTAGATGGGATTCTCA 600
Query 667 GTGTTCATGTCTTTCCATCGATCCCATCAGGTGGTATTGGTTCTAGGCCTGGGACCGTTC 726
| ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 601 GCGTTCACGTCTTTCCGTCGATCCCATCGGGTGGTATTGGCTCTAGGCCTGGGACCGTTC 660
Query 727 TTGCAGGTGCAGGATTGTTTACAGTCACGGTTCACGGTCAAGGTAGCCACGCAGCTACAC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCAGGTGCAGGATTGTTTACAGTCACGGTTCACGGTCAAGGTAGCCACGCAGCTACAC 720
Query 787 CGCACTTCTCTAAAGACCCGGTTCTTGCAGCTTCTTCCGCTGTTGTTGCCTTGCAACAGA 846
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 721 CGCATTTCTCTAAAGACCCGGTTCTTGCAGCTTCTTCCACTGTTGTTGCCTTGCAGCAGA 780
Query 847 TTGTTTCGCGGGAACTGGATCCACTCGAAGCTGGTGTGGTTACAGTTGGATATATTGAAG 906
|||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 781 TTGTTTCGCGGGAAATGGATCCACTCGAAGCCGGTGTGGTTACAGTTGGATACATTGAAG 840
Query 907 GAGGTCATGCTCAAAACGTAATACCGCAGAGTGCGAAATTTGGAGGTACTTTCAGAAGCT 966
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 GAGGTCATGCTCAAAATGTAATACCGCAGAGTGCGAAATTCGGAGGTACTTTCAGAAGCT 900
Query 967 TAAGCAACGATGGGCTTCTATTTATCCAAAGACGGATCAAAGAGATTTCAGAGGCACAAG 1026
|||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||
Sbjct 901 TAAGCAACGATGGGCTTCTATTCATTAAAAGACGGATCAGAGAGATTTCGGAGGCACAAG 960
Query 1027 CATCGGTATACCGATGCAAAGCAGAAGTAAACTTCGAAGAGAAAAAGCCGTCGCTTCACC 1086
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 961 CATCGGTGTACCGATGCAAAGCAGAAGTAAATTTTGAAGAGAAAAAGCCGTCGCTTCACC 1020
Query 1087 CGGTAATGAATAACGACGAGGGCTTATACGAGCACGGTAAAAAAGTAGCGGAAGCGATGA 1146
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGGTAATGAACAACGACGAGGGCTTATACGAGCACGGTAAAAAAGTAGCGGAAGCGATGA 1080
Query 1147 TTGGAAAGAATAACTTCCATGATTTCCCGGTGACAATGGGAGGAGAGGATTTCAGCTTCT 1206
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 TTGGAAAGAATAACTTCCATGATTTCCCGGTGACAATGGGAGGAGAAGATTTCAGCTTCT 1140
Query 1207 TCACTCAAAAGACTAAGGCTGCGATTTTCGTGCTGGGGGTAAAGAATGAGACGCTAGGCG 1266
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 TCACTCAAAAGACGAAGGCTGCGATTTTCGTGCTGGGGATAAAGAATGAGACGCTAGGCG 1200
Query 1267 CTGGTAAGCCGCTTCACTCGCCTTACTTCTTTGTTGATGAAGAAGCTCTTCCTGTTGGGG 1326
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTGGTAAGCCGCTTCACTCTCCTTACTTCTTTGTTGATGAAGAAGCTCTTCCTGTTGGGG 1260
Query 1327 CTGCTCTTCACGCAGCTATGGCCGTTTCTTATTTGGACGAACATGGTCATAGCCATGAAG 1386
|||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| |
Sbjct 1261 CTGCTCTTCACGCAGCCATGGCAGTTTCTTATTTGGATAAACATGGTCATGGCCATGACG 1320
Query 1387 AAGAGGTTAAGAGTGAATTATAGAAGGTGTTGGGAGAAAATCAGC-TTATATTAGTCATC 1445
| ||||||||||||||||||||||| ||||||| ||||||||||| || |||||||| ||
Sbjct 1321 ATGAGGTTAAGAGTGAATTATAGAATGTGTTGG-AGAAAATCAGCATTCTATTAGTCGTC 1379
Query 1446 ATCTATTTGTATTTGAACTTGAAAGTTAGGTGAGGTTAGGTTTCGG 1491
||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATCCACTTGTATTTGAACTTGAAAGTTAGGTGAGGTTAGGTTTCGG 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5