BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03070.1

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927805 jgi|Araly1|927805|scaffold_300262.1                        584    3e-166


> Ahg927805 jgi|Araly1|927805|scaffold_300262.1
Length=373

 Score =  584 bits (316),  Expect = 3e-166
 Identities = 350/367 (95%), Gaps = 0/367 (0%)
 Strand=Plus/Plus

Query  70   TTTCTCGTTGTTGGAACAATGGCGTCGAATCTCCTGAAAGCCCTAATCCGATCTCAGATT  129
            ||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  3    TTTCTCGGTGTTGGAGCAATGGCGTCAAATCTCCTGAAAGCCCTAATCCGATCGCAGATT  62

Query  130  CTTCCATCTTCCAGGAGGAATTTCAGTGTGGCGACCACACAGCTTGGCATTCCAACAGAC  189
            ||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct  63   CTTCCATCTTCGAGGAGGAATTTTAGTGTGGCGACCACACAACTCGGCATTCCAACAGAC  122

Query  190  GATCTAGTCGGCAATCACACCGCCAAATGGATGCAGGATAGAAGCAAGAAATCACCTATG  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  123  GATCTAGTCGGCAATCACACCGCCAAATGGATGCAGGATAGAAGCAAGAAATCACCTATG  182

Query  250  GAACTGATTAGTGAGGTTCCACCTATCAAAGTTGATGGAAGGATTGTTGCTTGTGAAGGA  309
            |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  183  GAACTGATCAGTGAGGTTCCACCTATCAAAGTTGATGGAAGGATTGCTGCTTGTGAAGGA  242

Query  310  GACACCAATCCGGCCCTAGGTCATCCAATCGAGTTCATATGCCTCGACCTAAATGAGCCT  369
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  243  GACACCAATCCGGCCCTGGGTCATCCAATCGAGTTCATATGCCTCGACCTAGATGAGCCT  302

Query  370  GCGATCTGCAAGTACTGCGGCCTTCGTTATGTTCAAGATCATCACCATTGAGGCAAATTC  429
            |||||||||||||||||||||||||| |||||||||||||||||||| | || |||||||
Sbjct  303  GCGATCTGCAAGTACTGCGGCCTTCGCTATGTTCAAGATCATCACCACTAAGCCAAATTC  362

Query  430  TGAAAGT  436
             ||||||
Sbjct  363  CGAAAGT  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26266689813


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5