BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03170.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927823 jgi|Araly1|927823|scaffold_300280.1 791 0.0
> Ahg927823 jgi|Araly1|927823|scaffold_300280.1
Length=517
Score = 791 bits (428), Expect = 0.0
Identities = 488/516 (95%), Gaps = 8/516 (2%)
Strand=Plus/Plus
Query 158 AGCCGCTTAGAAGAAAAAATGCACTATCAAGAACAGATGGAGTCTCTTATGTTGGGTGAA 217
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3 AGCGGCTTAGAAGAAAAAATGCACTATCAAGAACAGATGGAGTCTCTTATGTTGGGAGAA 62
Query 218 GAACGCAGACGCGGAAACTACACCAGAGACGTAGAC---G-CG--GACGCAGATGAAGGT 271
||||||||||||||||||||| |||||||| |||| | || |||||||| ||||||
Sbjct 63 GAACGCAGACGCGGAAACTACGTCAGAGACGCAGACTTGGACGCAGACGCAGAAGAAGGT 122
Query 272 GTTAACTCTCCCTCTTCTTTTCCAAACTCCCCTGATGATTCGGACCGTCGCAGTTCTTCT 331
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 123 GTTAACTCTCCCTCTTCTTTTCCAAACTCTCCTGATGATTCGGACCGTCGCACTTCTTCT 182
Query 332 TCTTCTTCAAGGAGAGGATTGTCGAAACATTACAAAGGTAAATCACAATCGTTCACAACG 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCTTCTTCAAGGAGAGGATTGTCGAAACATTACAAAGGTAAATCACAATCGTTCACAACG 242
Query 392 TTGGCAGAAGCGCTAACTGTGGAAGATCTCGCGAAGCCTGAGAATCCATTCAACGCAAAG 451
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 243 TTGGCAGAAGCGCTAACTGTGGAAGATCTCGCTAAGCCCGAGAATCCATTCAACGCAAAG 302
Query 452 CTGAAGCAGCGACGAGAGAGCCCTCACTGTCGTAGATTATCAGGATGCGGCGGCGCATCG 511
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 303 CTGAAGCAGCGACGAGAGAGCCCTCACTGTCGTAGATTATCCGGATGCGGCGGCGCTTCG 362
Query 512 GAGCGAAATTTAAGTG-TCCACGACGTTTTTCTCGCTGGGAACGATAGACCGCCGCGACT 570
|||||||||||||||| || |||||||||||||||| || |||||||| |||| ||||||
Sbjct 363 GAGCGAAATTTAAGTGGTC-ACGACGTTTTTCTCGCCGGAAACGATAGGCCGCAGCGACT 421
Query 571 TTCCGGTAACAGACCGCCTCCGAGAGCCCAGACGCTCTCGGCGGCTCATATTTCGGCTTT 630
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTCCGGTAACAGACCGCCTCTGAGAGCCCAGACGCTCTCGGCGGCTCATATTTCGGCTTT 481
Query 631 GCTCACTCGAACCTAAACCGGAAGAGAACCGGGTTT 666
||| ||||||||||||||||||| ||||||||||||
Sbjct 482 GCTTACTCGAACCTAAACCGGAACAGAACCGGGTTT 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5