BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03330.1 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg477582 jgi|Araly1|477582|fgenesh2_kg.3__283__AT3G03330.1 1604 0.0 > Ahg477582 jgi|Araly1|477582|fgenesh2_kg.3__283__AT3G03330.1 Length=1063 Score = 1604 bits (868), Expect = 0.0 Identities = 976/1028 (95%), Gaps = 8/1028 (1%) Strand=Plus/Plus Query 24 AAGACTTGGTCTCTCGCTGGTTGCTTCAATCCGAGAAAATGCTGACTCTACTCTTCTTCT 83 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGACTTGGTCTCTCGCT-GTTGCTTCAATCCGAGAAAATGCTGACTCTACTCTTCTTCT 59 Query 84 CTCTCGGAGCGCTTCTTCTTATCGTTCTGCTCTTCAAATTTGCA-TTCGCCGATGGAGAT 142 |||||||| | | |||||||||| ||||||||||||||| ||| || |||||||||||| Sbjct 60 CTCTCGGA--G-TCCTTCTTATCGGTCTGCTCTTCAAATTCGCACTT-GCCGATGGAGAT 115 Query 143 TTTACCTTGATTTCGAAGAAGCATGTGAAGCGTGAGGCCATACAAGGCAAGGTCGTCTGG 202 |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 116 TTTACCCTGATTTCGAAGAAGCATGTGAAGCGTGAAGCCATACAAGGAAAGGTCGTCTGG 175 Query 203 ATCACAGGGGCTAGCCGTGGAATTGGTGAAATTCTTGCTAAACAGTTTGCAAGTTTAGAT 262 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 176 ATCACAGGGGCTAGCCGTGGGATTGGGGAAATTCTTGCTAAACAGTTTGCAAGTTTAGAT 235 Query 263 GCCAAGCTTATTCTCTCTGCTAGGAATAAAGCTGAACTGGATCGGGTTAAGAGTGAGCTT 322 |||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct 236 GCCAAGCTTATTCTCTCTGCGAGGAATAAAGCTGAACTGGAGAGAGTTAAGAGTGAGCTC 295 Query 323 AAAGGTAAATTTGCACCAGAAGATGTCAAGGTTTTGCCTTTAGATTTAGCTAGCGGCGAA 382 |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 296 AAAGGTAAATATGCACCAGAAGATGTCAAGGTTTTGCCTTTAGATTTAGCTAGTGGTGAA 355 Query 383 GAGTCACTCAAACATGTTGTAGAGCAAGCAGTGTCGCTTTTCCCTGGAGCTGGTGTTGAT 442 ||||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 356 GAGTCGCTCAAACATGTCGTAGAGCAAGCTGTGTCACTTTTCCCTGGGGCTGGTGTTGAT 415 Query 443 TATTTGGTTCACAATGCTGCCTTTGAGCGTCCGAAATCCAAGGCATCGGATGCAAGTGAG 502 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| Sbjct 416 TATTTGGTTCACAATGCTGCCTATGAGCGTCCGAAATCCAAGGCATCTGATGCAACTGAG 475 Query 503 GAAACTCTCAAGACTACATTCGATGTTAATGTCTTTGGGACGATATCTCTGACAAAGTTG 562 ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| Sbjct 476 GAAACTCTCAAGACTACATTCGATGTTAATGTCTTTGGGACTATAACTCTTACAAAGTTG 535 Query 563 GTAGCTCCTCATATGCTAAAACAAGGAGGGGGTCATTTTGTTGTGATAAGCAGTGCTGCA 622 |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 536 GTAGCTTCTCATATGCTAAAACAAGGAGGCGGTCATTTCGTTGTGATAAGCAGTGCTGCA 595 Query 623 GGAAAGGTACCATCACCTGGACAGGCTATATATTCTGCTTCAAAACATGCTCTTCATGGC 682 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 596 GGAAAGGTACCATCACCTGGACAGGCTATATATTCTGCTTCAAAACATGCTCTGCACGGC 655 Query 683 TACTTCCACAGCTTGCGTTCTGAGTTCTGTCAGAAGGGAATCAAGGTTACCGTCGTTTGT 742 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 656 TACTTCCACAGCTTGCGTTCTGAGTTTTGTCAGGAGGGAATCAAGGTTACCGTCGTTTGT 715 Query 743 CCTGGTCCAATAGAAACCTGGAATGGTACAGGAACATCAACTTCGGAAGACA-GCAAGTC 801 ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| Sbjct 716 CCTGGTCCAATAGAAACCTTGAATGGTACAGGAACATCAACTTCGGAAGACAAG-AAGTC 774 Query 802 TCCTGAGAAACGTGTGTCATCTGAACGATGTGCAGAGCTGACTATAATCGCTGCATCTCA 861 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 775 TCCTGAGAAACGTGTGTCATCTGAACGATGTGCAGAACTGACTATAATCGCTGCGTCTCA 834 Query 862 TAACTTGAAGGAAGCTTGGATTTCATATCAGCCAGTACTACTCGTGATGTATCTAGTGCA 921 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 835 TAACTTGAAGGAAGCTTGGATTTCATATCAGCCGGTACTGCTCGTGATGTATCTAGTGCA 894 Query 922 GTACATGCCTTCCCTTGGCTTCTGGCTCATGGACAAGGTTGGAGGAAAGCGTGTGGAGGT 981 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 895 GTACATGCCTTCCCTTGGCTTCTGGCTCATGGACAAGGTTGGAGGGAAGCGTGTAGAGGT 954 Query 982 CGCGGAAAAGAAAGGCAACACATACTCGTGGGATTTACTGTTCGGGAAGAAGACTAAAAC 1041 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct 955 CGCGGAAAAGAAAGGCAACACATACTCATGGAATTTACTGTTCGGGAAGAAGACCAAAAC 1014 Query 1042 AAACTGAA 1049 |||||||| Sbjct 1015 AAACTGAA 1022 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5