BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03440.1 Length=1558 Score E Sequences producing significant alignments: (Bits) Value Ahg477590 jgi|Araly1|477590|fgenesh2_kg.3__291__AT3G03440.1 2348 0.0 > Ahg477590 jgi|Araly1|477590|fgenesh2_kg.3__291__AT3G03440.1 Length=1533 Score = 2348 bits (1271), Expect = 0.0 Identities = 1458/1547 (94%), Gaps = 18/1547 (1%) Strand=Plus/Plus Query 16 tctctttctctttctctttctcaagcagatcttttcttctttctcCTGAAATGGACCTCG 75 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTCTTTCTCTTTCTC-AGCAGATCTTTTCTTCTTTCTCCTGAAATGGACCTCG 59 Query 76 CCGGAGAAACAAACAGCCTTATCTCCACCGTCGCTTCTTCTTCTTCCTGTTCTTCCTCCG 135 ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| Sbjct 60 CCGGAGAAACAAACAGCCTTATCTCCACCGTCGCTTCTTTTTCTTCTTCTTCTTCCTCCG 119 Query 136 TGTCGTCAATCGACACAAGCCTCGATTGCGATTCGCCACGTGGCGGAGATGTAGACCACG 195 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTTCATCAATCGACACAAGCCTCGATTGCGATTCGCCACGTGGCGGAGATGTAGACCACG 179 Query 196 AATTGCTCCACACGGCGGTTTCGGTTTC-TTCGTCGGTGTCGGTTTCTTCGTCTTCTTCT 254 ||||||||||| |||||||||| || | |||||| ||||||||||||||||||||| Sbjct 180 AATTGCTCCACTCGGCGGTTTCTCCGTCGGT-GTCGGTTTCGGTTTCTTCGTCTTCTTCT 238 Query 255 GCTTCAATCCAGAGAGTTCTGAGCTTAATCCGATCGGAGGAT-TGCGATTCGAGGCTGTT 313 ||||||||||||||||| ||||| |||||| |||| |||||| | |||||||||| |||| Sbjct 239 GCTTCAATCCAGAGAGTACTGAGTTTAATCAGATCAGAGGATCT-CGATTCGAGGTTGTT 297 Query 314 TGCTGCTAAAGAGATCCGTCGGCTGACAAAGACGTCTCATAGGTGCCGCCGACACTTTTC 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TGCTGCTAAAGAGATCCGTCGGCTGACAAAGACGTCTCATAGGTGCCGCCGACACTTTTC 357 Query 374 CCAAGCCGTGGAACCTCTCGTTTCTATGCTCCGATTTGATTCGCCTGAATCTCACCACGA 433 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 358 CCAAGCCGTGGAACCGCTCGTTTCTATGCTCCGATTTGATTCGCCTGAATCTCACCATGA 417 Query 434 GGCTGCTTTACTCGCTCTCCTTAACCTCGCCGTCAAAGACGAAAAGAATAAAGTGAGTAT 493 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 AGCTGCTTTACTTGCTCTCCTTAACCTCGCCGTCAAAGACGAAAAGAATAAAGTGAGTAT 477 Query 494 AATTGAAGCCGGTGCTTTAGAGCCAATCATCAACTTCTTACAATCAAATAGCCCAACACT 553 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AATTGAAGCTGGTGCTTTAGAGCCAATCATCAACTTCTTACAATCAAATAGCCCAACACT 537 Query 554 TCAAGAGTATGCTTCTGCATCTTTGCTCACTCTCTCCGCGTCAGCAAACAACAAACCCAT 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TCAAGAGTATGCTTCTGCATCTTTGCTCACTCTCTCCGCGTCAGCAAACAACAAACCCAT 597 Query 614 CATTGGAGCTAATGGTGTGGTTCCTTTATTAGTCAAGGTCATTAAACATGGAAGCCCACA 673 ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 598 CATTGGAGCTAATGGCGTGATTCCTTTATTAGTCAAAGTCATTAAACATGGAAGCCCACA 657 Query 674 AGCTAAAGCTGATGCAGTAATGGCTCTTTCCAACCTCTCTACACTCCCCGATAACCTAAG 733 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 658 AGCTAAAGCTGATGCAGTAATGGCTCTTTCCAACCTCTCTACACTCCCCGATAACCTTAG 717 Query 734 CATGATCCTAGCAACTAAACCACTCTCACCAATACTGAATCTTCTCAAATCAAGTAAAAA 793 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CATGATCCTAGCGACTAAACCACTCTCACCAATACTGAATCTTCTCAAATCAAGTAAAAA 777 Query 794 GTCGTCGAAAACATCTGAGAAATGTTGTTCACTAATAGAGGCCTTGATGGTTTCTGGTGA 853 ||| |||||||||||||||||||||||||| || ||||| ||||||| ||||||||||| Sbjct 778 GTCATCGAAAACATCTGAGAAATGTTGTTCTCTGATAGAATCCTTGATAGTTTCTGGTGA 837 Query 854 GGAGGCGAGAACAGGGTTAGTTTCTGATGAAGGAGGAGTTTTAGCGGTCGTGGAAGTTCT 913 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 838 GGATGCGAGAACAGGGTTAGTTTCAGATGAAGGAGGAGTTTTAGCGGTCGTGGAAGTTCT 897 Query 914 TGAAAACGGGTCATTACAAGCTCGGGAACATGCCGTTGGCGTGCTTTTAACGCTCTGCCA 973 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 898 TGAAAACGGGTCATTGCAAGCTCGGGAACATGCGGTTGGCGTACTTTTAACGCTCTGCCA 957 Query 974 AAGCGATAGGAGTAAATACAGAGAGCCAATTCTTAGAGAAGGTGTAATACCGGGACTGCT 1033 ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 958 AAGTGATAGGAGTAAATACAGAGAGCCAATTCTTAGAGAAGGTGTGATACCAGGACTGCT 1017 Query 1034 TGAGCTCACGGTTCAGGGGACATCGAAATCTCGGATTAAAGCTCAAAGACTTCTCTGTTT 1093 ||||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||||| Sbjct 1018 TGAGCTCACGGTTCAAGGGACATCAAAATCTCGGACTAAAGCTCAGAGACTTCTCTGTTT 1077 Query 1094 ACTAAGGAACTCGGAAAGTCCGAGATCAGAGGTCCAACCCGATACAATAGAAAACATAGT 1153 ||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1078 ACTAAGGGACTCAGAAAGCCCGAGATCAGAGGTTCAACCCGATACAATAGAAAACATAGT 1137 Query 1154 GTCAAGCTTAATCTCTCATATAGACGGAGATGATCAATCCGGTAAGGCAAAGAAGATGCT 1213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 GTCAAGCTTAATCTCTCATATAGACGGAGATGATCAATCCGGTAAGGCAAAGAAGATGCT 1197 Query 1214 AGCTGAAATGGTCCAAGTTAGCATGGAAAAAAGCTTGAGACATCTACAAGAACGTGCCTC 1273 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1198 AGCTGAAATGGTGCAAGTTAGCATGGAAAAAAGCTTGAGACATCTACAAGAACGTGCTTC 1257 Query 1274 GACTCTTGTTCGTCCATAACCTGTGATCGAAAA-CCGCAATCCCTAGGTTTCTTCCAAGT 1332 ||||||||| |||||||||| |||||||||||| |||||||||| ||| ||||||||| Sbjct 1258 GACTCTTGTCCGTCCATAACATGTGATCGAAAAACCGCAATCCCGAGGACTCTTCCAAGC 1317 Query 1333 ATAAAAACGGTGGTTTGACTCCGAATAAGGGTGATGAAGATTGAAGAATATATATATGCC 1392 ||||| || |||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1318 ATAAAC-CG-TGGTATGTCTCCGAATAAGGGTGATTAAGATTGATGAATATATATATGCC 1375 Query 1393 AGTCCAGTTGCCGGCGCTTTGGTTCTTAGTGACTGGttttttttttttttACTCAAAAGT 1452 |||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||| Sbjct 1376 AGTCCAGTTGCCGGCGTTTTGGTTCTTAGTGACTGGTTTTTTTTTTCTT-ACTCAGAAGT 1434 Query 1453 GTTCATAATAAAATCATTTTGTAATTTAAAGTCTTTTTGTGTGTACATGCATTACTTATA 1512 ||||||||||||| || |||||||||||| |||||||||||||||||| | ||||||| Sbjct 1435 GTTCATAATAAAAGCAATTTGTAATTTAA-GTCTTTTTGTGTGTACAT---T-ACTTATA 1489 Query 1513 GAATCGCTTTTAC-TTTaaaaaaaGGTTTCAATGATATTATTGTGCC 1558 ||||||||||||| ||| | || | ||||||||||||| ||||||| Sbjct 1490 GAATCGCTTTTACATTTTACAA--G-TTTCAATGATATTGTTGTGCC 1533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58354255340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5