BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03450.1 Length=2070 Score E Sequences producing significant alignments: (Bits) Value Ahg477591 jgi|Araly1|477591|fgenesh2_kg.3__292__AT3G03450.1 2748 0.0 Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1 767 0.0 > Ahg477591 jgi|Araly1|477591|fgenesh2_kg.3__292__AT3G03450.1 Length=1934 Score = 2748 bits (1488), Expect = 0.0 Identities = 1765/1891 (93%), Gaps = 49/1891 (3%) Strand=Plus/Plus Query 170 CCACTACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGAT 229 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 75 CCACCACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGCT 134 Query 230 GATGACAACAACAACAGCAACATGGATGATGAGCTTCTTGCTGTTCTTGGCTACAAGGTT 289 |||| ||||| | | ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 135 GATG---ACAAC-A-A-CAACATGGATGATGAGCTTCTTGCTGTTCTTGGATACAAGGTT 188 Query 290 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAACAACTTGAGATGGTCTTGTCT 349 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 189 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAGCAACTTGAGATGGTCTTGTCT 248 Query 350 AATGATGATGTTGGTTCTACTGTCTTAAACGACTCTGTTCATTATAACCCATCTGATCTC 409 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 249 AATGATGATGTTGGTTCTACTGTCTTAAACGACACTGTTCATTATAACCCATCTGATCTC 308 Query 410 TCTAACTGGGTCGAGAGCATGCTTTCTGAGCTGAACAACCCGGCTTCTTCGGATCTTGAC 469 |||| |||||||||||||||||| || ||||| |||||||| ||||||||||||||||| Sbjct 309 TCTACCTGGGTCGAGAGCATGCTCTCGGAGCTTAACAACCCAACTTCTTCGGATCTTGAC 368 Query 470 ACGACCCGAAGTTGTGTGGATAGATCCGAATACGATCT-CAGAGCAATTCCGGGTCTTTC 528 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 369 CCGACCCGAAGTTGTGTGGATAGATCCGAATACGATCTGC-GAGCAATTCCGGGTCTTTC 427 Query 529 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAGAGGATCCGACT 588 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 428 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAAAGGATCCGACT 487 Query 589 CGGATCGTGGTGCGAATCGTC-GGACGAGTCAACTCGGTCCGTGGTGCTCGTTGACTCTC 647 |||||| ||||||||| || | || ||||||||||||||||||||| |||||||||||| Sbjct 488 CGGATCCTGGTGCGAACCGGCTGG-TGAGTCAACTCGGTCCGTGGTGGTCGTTGACTCTC 546 Query 648 AGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGGCGTGCGCTGAGGCGATTCACCAGG 707 ||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| Sbjct 547 AGGAGACCGGAGTTAGACTCGTCCACGCGCTGGTGGCGTGCGCTGAGGCGATTCAGCAGG 606 Query 708 AGAATCTCAACTTAGCTGACGCGCTGGTGAAACGCGTGGGAACACTCGCGGGTTCTCAAG 767 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 607 AGAATCTCAACTTAGCTGACGCGCTCGTGAAACGCGTGGGAACACTCGCGGCTTCTCAAG 666 Query 768 CTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTCAAGCCTTGGCTCGTCGTATTTACC 827 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 667 CTGGAGCTATGGGAAAAGTCGCTACGTATTTCGCTCAAGCTTTGGCTCGTCGTATTTACC 726 Query 828 GTGATTACACGGCGGAGACGGACGTTTGCGCGGCGGTGAACCCATCTTTCGAAGAGGTTT 887 ||||||||||||||||||||||||| | | ||| | | | || || |||||||||| Sbjct 727 GTGATTACACGGCGGAGACGGACGTCT-C-AGGC-G-G----C-TCCTTGGAAGAGGTTT 777 Query 888 TGGAGATGCACTTTTACGAGTCTTGCCCTTACCTGAAGTTCGCTCATTTCACGGCGAACC 947 || |||||||||| ||||| |||||||||||||| || |||||||||||||||||||| | Sbjct 778 TGCAGATGCACTTCTACGATTCTTGCCCTTACCTAAAATTCGCTCATTTCACGGCGAATC 837 Query 948 AAGCGATTCTAGAAGCTGTTACGACGGCGCGTAGAGTTCACGTCATTGATTTAGGGCTTA 1007 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 838 AAGCGATTCTAGAAGCTGTCGCGACGGCGCGTAGAGTTCACGTCATCGATTTAGGGCTTA 897 Query 1008 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGACCTC 1067 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 898 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGTCCTC 957 Query 1068 CGTCGTTTCGTCTCACCGGAATCGGACCACCGCAGACGGAGAATTCAGATTCGCTTCAAC 1127 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 958 CGTCGTTTCGTCTCACCGGAATCGGACCTCCGCAGAAGGAGAATTCAGATTCGCTTCAAC 1017 Query 1128 AGTTAGGTTGGAAATTAGCTCAATTCGCTCAGAACATGGGCGTTGAATTCGAATTCAAAG 1187 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1018 AATTAGGTTGGAAATTAGCTCAATTCGCTCAAAACATGGGCGTTGAATTCGAATTCAAAG 1077 Query 1188 GCTTAGCCGCTGAGAGTTTATCGGATCTTGAACCCGAAATGTTCGAAACCCGACCCGAAT 1247 | |||||||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 1078 GTTTAGCCGCTGAGAGTTTATCGGATCTAGAACCCGAAATGTTCGAAACCCGACCTGATT 1137 Query 1248 CTGAAACCTTAGTGGTTAATTCGGTATTTGAGCTCCACCGGTTATTAGCCCGATCCGGTT 1307 | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1138 CCGAAACCTTAGTGGTTAATTCGGTTTTTGAGCTTCACCGGTTATTAGCCCGATCCGGTT 1197 Query 1308 CAATCGAAAAGCTTCTCAATACGGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTG 1367 |||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||||| Sbjct 1198 CAATAGAAAAGCTTCTCAACACGGTTAAAGCTGTTAAACCGAGTATTATAACGGTGGTTG 1257 Query 1368 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1317 Query 1428 ACTACTCGAGCTTGTTTGACTCGCTCGAAGACAGTTATAGTTTACCGAGTCAAGACCGAG 1487 ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1318 ACTACTCGAGCCTGTTTGACTCGCTCGAAGACAGTGGTAGCTTACCGAGTCAAGACCGAG 1377 Query 1488 TTATGTCAGAAGTGTACTTAGGGAGACAGATACTCAACGTTGTTGCGGCGGAAGGGTCCG 1547 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 1378 TTATGTCAGAAGTGTACTTAGGGAGACAAATACTTAACGTTGTTGCGGCGGAAGGATCCG 1437 Query 1548 ATCGGGTCGAGCGGCACGAGACGGCTG-CACAGTGGAGGATTCGGATGAAATCCGCTGGG 1606 ||||||||||||| |||||||||| || ||||||||||||| |||||||||||||||||| Sbjct 1438 ATCGGGTCGAGCGACACGAGACGG-TGGCACAGTGGAGGATCCGGATGAAATCCGCTGGG 1496 Query 1607 TTTGACCCGATTCATCTCGGATCTAGCGCGTTTAAACAAGCGAGTATGCTTTTATCGCTT 1666 ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 1497 TTTGACCCGGTTCATCTCGGATCTAGCGCGTTCAAACAAGCGAGCATGCTTTTATCACTT 1556 Query 1667 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGATGTTTAATGATAGGGTGG 1726 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1557 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGTTGTTTAATGATTGGGTGG 1616 Query 1727 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCC-----TG---AGTCGCGG 1778 |||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1617 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCCGGAGGTGGCGAGTCGCGG 1676 Query 1779 CGGTAGAGATGACTCGCCTGAAACCGGGAAAAACAATAAATGTTTTAAAAAATTAGGAAA 1838 |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 1677 CGGTAGAGATGACTTGCATGAAACCGGGAAAAT-AATAAATGTTTTAAAAAATTAGGAAA 1735 Query 1839 AGAGACCGTAACtttagttatgtttttactttttaacccgaagtttttgtgtgtttaacc 1898 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 GGAGACCGTAACTTTAGT-ATGTTTTTACTTTTTAACCCGAAGTTTTTGTGTGTTTAACC 1794 Query 1899 tttttgcctaaatgtttacaactttatctttttGGACCTTGTGCGTATCTTTGAGAGTTA 1958 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1795 GTTTTGCCTAAATGTTTACAACTTTATCTTTTTGGACCTTGTGCGTATCTTTGAGA---A 1851 Query 1959 AGAGAACGAGTAAAAAATCTTGTATCGTAGATCGAGCTAAGTA-GTTTTCAATAAATG-G 2016 ||||||||| ||||||||||||||||||||| |||| |||||||||||||| | Sbjct 1852 ------CGAGTAAAA--TCTTGTATCGTAGATCGAGCTGAGTAAGTTTTCAATAAATGTG 1903 Query 2017 -AAGGATAA----CGATTCTGTATGTTTTTT 2042 |||||||| |||||||||||||||||| Sbjct 1904 GAAGGATAATAAACGATTCTGTATGTTTTTT 1934 Score = 84.2 bits (45), Expect = 3e-15 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 16 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 60 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 45 > Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1 Length=1957 Score = 767 bits (415), Expect = 0.0 Identities = 986/1251 (79%), Gaps = 81/1251 (6%) Strand=Plus/Plus Query 569 AGCAGCAAGAGGATCCGACTCGGAT-CGTGGTGCGAATC-GTCG-G-A-CGAGTCAACTC 623 |||| ||||||||| |||||| | | | |||| || || || | | | ||| ||||||| Sbjct 532 AGCAACAAGAGGATTCGACTC-GCTCCTTGGTATGACTCAGT-GAGCAGCGACTCAACTC 589 Query 624 GGTCCGTGGTGCTCGTTGACTCTCAGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGG 683 | ||||| || | | || | || ||||||||||||| ||||| ||||| || ||||||| Sbjct 590 GTTCCGTCGT-C-C-TT-A-TC-GAGGAGACCGGAGTCAGACTCGTCCAGGCGCTAGTGG 643 Query 684 CGTGCGCTGAGGCGATTCACCAGGAGAATCTCAACTTAGCTGACGCGCTGGTGAAACGCG 743 | ||||| |||||| | || || |||||||| | | | || || || || ||||| |||| Sbjct 644 CCTGCGCCGAGGCGGTCCAGCATGAGAATCTGAGCCTCGCGGATGCTCTCGTGAAGCGCG 703 Query 744 TGGGAACACTCGCGGGTTCTCAAGCTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTC 803 ||||| ||||||||| ||||||||| ||||| ||||| |||||||| || || || || | Sbjct 704 TGGGATCACTCGCGGCTTCTCAAGCGGGAGCGATGGGGAAAGTCGCCACCTACTTCGC-C 762 Query 804 -AAGCCTTGGCTCGTCGTATTTACCGTGATTACACGGCGGAGACGGACGTTTGCGCGGCG 862 ||||| | |||||||| |||||||| |||| || | | | | || || | Sbjct 763 GAAGCCCTAGCTCGTCGGATTTACCG-GATT-CA--TC-----C-TTCCTCCGC-CGCCA 811 Query 863 GTGAACCCAT-CTTTCGAAGAGGTT-TTGGAGATGCACTTT-TACGAGTCTTGCCCTTAC 919 || | || | |||| |||||| || || ||||| | ||| ||||| || || |||||| Sbjct 812 TTG-ATCCTTCCTTT-GAAGAGATTCTT-CAGATG-AATTTCTACGACTCGTGTCCTTAC 867 Query 920 CTGAAGTTCGCTCATTTCACGGCGAACCAAGCGATTCTAGAAGCTGTTACGACGGCGCGT 979 || || |||||||||||||| || || ||||||||||||||||| ||||||||| ||||| Sbjct 868 CTCAAATTCGCTCATTTCACAGCCAATCAAGCGATTCTAGAAGCCGTTACGACGTCGCGT 927 Query 980 AGAGTTCACGTCATTGATTTAGGGCTTAATCAAGGGATGCAATGGCCTGCTTTAATGCAA 1039 | || ||||| || ||| |||||||||||||||||||||||||||| || ||||||||| Sbjct 928 GGCGTACACGTTATCGATCTAGGGCTTAATCAAGGGATGCAATGGCCGGCGTTAATGCAA 987 Query 1040 GCTTTAGCTCTCCGACCCGGTGGACCTCCGTCGTTTCGTCTCACCGG-AATCGGACCACC 1098 || |||||||||||||||||||| ||||||||||||||||||||||| | ||| | | Sbjct 988 GCCTTAGCTCTCCGACCCGGTGGTCCTCCGTCGTTTCGTCTCACCGGCGTTGGGA-C-TC 1045 Query 1099 GCAGACGGAGAATTC-AGATTCGCTTCAACAGTTAGGTTGGAAATTAGCTCAATTCGCTC 1157 | | | ||| || || | ||||| ||||||||||||| ||||||| | |||| Sbjct 1046 -C-GTC---GAA-TCGTGACGGGATTCAAGAGTTAGGTTGGAAGCTAGCTCAGCTGGCTC 1099 Query 1158 -AGAACATGGGCGTTGAATTCGAATTCAAAGGCTTAG-CCG-CTGAGAGTTTATCGGATC 1214 || ||| ||||| |||||||| ||||| || | | || | ||||| ||||| ||| Sbjct 1100 AAG-CCATCGGCGTCGAATTCGAGTTCAATGG--TCGAACGACGGAGAGATTATCCGAT- 1155 Query 1215 TT-GAACCCG-AAATGTTCGAAACCCGACCCGAATCTGAAACCTTAGTGGTTAATTCGGT 1272 || ||| ||| | |||||||| ||||||||||| || || || ||||||||||||||||| Sbjct 1156 TTGGAA-CCGTATATGTTCGAGACCCGACCCGAGTCGGAGACTTTAGTGGTTAATTCGGT 1214 Query 1273 ATTT-GAGCTCCA-CCGGTTATTAGCCCGATCCGGTTCAATCGAAAAGCTTCTCAAT-AC 1329 ||| ||||| || |||||| ||| | | | ||||||| |||||||||| | | | | || Sbjct 1215 -TTTCGAGCTTCACCCGGTT-TTATCGCAACCCGGTTCGATCGAAAAGC-TGTTAGTGAC 1271 Query 1330 GGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTGAGCAAGAAGCGAACCACAACGG 1389 |||||| || ||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 1272 GGTTAAGGCGGTTAAACCGAGTATCGTAACGGTGGTGGAACAAGAAGCGAACCATAACGG 1331 Query 1390 AATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATTACTACTCGAGCTTGTTTGACTC 1449 ||| ||| | || |||| ||||||||||| || || |||||||||||||||||||| Sbjct 1332 CGCCGTTTTCTTAGACCGGTTTAACGAAGCGCTACACTATTACTCGAGCTTGTTTGACTC 1391 Query 1450 GCTCGAAGACAGT-TATAGT-TTACCGAGTCAAGACCGAGTTATGTCAGA-AGTGTACTT 1506 ||||||||| || | | || |||||||||||||||||||| ||||| || | | ||||| Sbjct 1392 GCTCGAAGATGGTGT-T-GTCTTACCGAGTCAAGACCGAGTCATGTCGGAGATT-TACTT 1448 Query 1507 AGGGAGACAGATACTCAACGTTGTTGCGGCGGAAGGG-TCCGATCGGGTCGAGCGGCACG 1565 |||||||||||| | ||||| || ||||||||||| | |||||| |||||||||| | Sbjct 1449 AGGGAGACAGATTTTGAACGTGGTGGCGGCGGAAGGAATT-GATCGGATCGAGCGGCATG 1507 Query 1566 AGACGGCTG-CACAGTGGAGGATTCGGATGAAATCCGCTGGGTTTGACCCGATTCATCTC 1624 |||| ||| | |||||| ||| |||||| ||||||| |||||||||||| || ||||| Sbjct 1508 AGACA-CTGGCTCAGTGGCGGAAACGGATGGAATCCGCCGGGTTTGACCCGGTTAATCTC 1566 Query 1625 GGATCTAG-CGCGTTTAAACAAGCGAGTATGCTTTTATCGCTT-TAC-G-CTACCGGAGA 1680 ||||| || ||||||||| ||||||||| |||| || || || | | | | | ||||| Sbjct 1567 GGATC-AGACGCGTTTAAGCAAGCGAGTTTGCTATTGGCG-TTAT-CTGGCGGC-GGAGA 1622 Query 1681 TGGATACAGAGTTGAAGAAAATGACGGATGT-TTAATGATAGGGTGGCAGACGCGACCAC 1739 |||||||||||| || || || |||||| | ||| || | | |||||||||| ||| | Sbjct 1623 TGGATACAGAGTGGAGGAGAACGACGGAAGCCTTA-TGCTTGCGTGGCAGACGAAACCGC 1681 Query 1740 TCATCACAACCTCGGCGTGGAAACTCGCC-TG-AGTCGCGGCGGTAGAGAT 1788 ||||| | | |||||||||||||| || || ||| |||||||||||||| Sbjct 1682 TCATCGCCGCATCGGCGTGGAAACTGGCGGTGGAGTTGCGGCGGTAGAGAT 1732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77856460780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5