BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03470.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927863 jgi|Araly1|927863|scaffold_300320.1 2508 0.0
> Ahg927863 jgi|Araly1|927863|scaffold_300320.1
Length=1587
Score = 2508 bits (1358), Expect = 0.0
Identities = 1515/1590 (95%), Gaps = 14/1590 (1%)
Strand=Plus/Plus
Query 67 TTTGATTTGAAGCAAGAGGAGCAACAATGGAGATCACCACTATCATATTCCTCATCATAT 126
||| |||||||| |||| | |||||||||||||||||||| |||||||||| ||||| |
Sbjct 1 TTTAATTTGAAG-AAGA--A-CAACAATGGAGATCACCACTCTCATATTCCTTATCATCT 56
Query 127 CCTCTCTCACCTTCTCCATCTTCCTTAAACTCATCTTCTTCTTCTCAACTCACAAACTCC 186
|||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 57 CCTCTCTCACATTCGCCATCTTCCTTAAACTCATCTTCTTCTCCTCAACTCACAAACTCC 116
Query 187 CACCGGGACCACCTCGTTTTCCGGTCATCGGAAACATCATCTGGCTTAAGAAAAACAACT 246
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 117 CACCGGGACCACCTCGTTTTCCGGTCATCGGAAACATAATCTGGCTTAAGAAAAACAACT 176
Query 247 TCTCCGATTTCCAAGGCGTTCTCCGTGACTTAGCCTCCCGTCACGGACCAATCATAACAC 306
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 TCTCTGATTTTCAAGGTGTTCTCCGTGACTTAGCCTCCCGTCACGGACCAATCATAACCC 236
Query 307 TCCACGTAGGCTCCAAACCTTCCATCTGGGTCACAGACAGATCACTCGCTCACCAAGCCC 366
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 237 TCCACGTAGGCTCAAAACCTTCCATCTGGGTCACAGAGAGATCACTCGCTCACCAAGCCC 296
Query 367 TTGTCCAAAACGGTGCCGTTTTCTCCGACCGTTCTCTCGCTCTCCCTACCACCAAAGTCA 426
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCGTCCAAAACGGTGCCGTTTTCTCCGACCGTTCTCTCGCTCTCCCTACCACCAAAGTCA 356
Query 427 TCACCAGCAACCAACACGACATCCACTCCTCCGTCTATGGCTCTCTCTGGAGAACCCTCC 486
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 TCACCAGCAACCAACACGACATCCACTCCTCCGTCTACGGCTCTCTCTGGAGAACCCTCC 416
Query 487 GCCGCAACCTCACCTCCGAAATCCTCCAGCCCTCGCGCGTGAAAGCACACGCGCCGTCGA 546
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 417 GCCGCAACCTCACCTCCGAAATCCTCCAACCATCGCGCGTGAAAGCACACGCGCCGTCGA 476
Query 547 GGAAATGGTCTCTCGAGATTCTCGTGGATCTGTTCGAGACAGAGCAGAGAGAGAAAGGAC 606
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 GGAAATGGTCTCTCGAGATCCTCGTGGATCTGTTCGAAACAGAGCAGAGAGAGAAAGGAC 536
Query 607 ATATCTCCGACGCTTTAGATCATTTACGTCACGCTATGTTTTATTTGTTGGCTCTGATGT 666
|| |||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||
Sbjct 537 ATGTCTCCGACGCTTTAGATCATCTCCGTCACGCGATGTTTTATTTATTGGCTCTGATGT 596
Query 667 GTTTCGgagagaaactgagaaaagaagagatcagagagatcgaagaagCTCAGTACCAAA 726
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTTTCGGAGAGAAGCTGAGAAGAGAAGAGATCAGAGAGATCGAAGAAGCTCAGTACCAAA 656
Query 727 TGCTCATAAGCTACACCAAGTTCAGCGTCCTCAACATCTTCCCAAGCGTAACCAAGTTCT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGCTCATAAGCTACACCAAGTTCAGCGTCCTCAACATCTTCCCAAGCGTAACCAAGTTCT 716
Query 787 TGCTCCGGCGAAAATGGAAAGAGTTTTTAGAACTAAGGAAATCTCAAGAGAGCGTTATAC 846
||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||
Sbjct 717 TGCTCCGGCGAAAATGGAAAGAGTTCTTAGATCTAAGGAAATCTCAAGAAAACGTTATAC 776
Query 847 TTCGATACGTGAACGCAAGAAGCAAAGAAACCACCGGAGATGTTCTCTGTTACGTCGATA 906
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCCGATACGTGAACGCAAGGAGCAAAGAAACCACCGGAGATGTTCTCTGTTACGTCGATA 836
Query 907 CGCTGCTGAATCTTGAGATCCCGACGGAGGAG-A-AA-GAAGGAGGGAAGAAGAGGAAAC 963
|||| |||||||| ||||| |||| ||||||| | || ||||||||||||||||||||||
Sbjct 837 CGCTACTGAATCTAGAGATTCCGATGGAGGAGGATAAAGAAGGAGGGAAGAAGAGGAAAC 896
Query 964 TGAGTGACTCGGAGATCGTGAGTCTGTGTTCGGAGTTTCTTAACGCAGCTACGGATCCAA 1023
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGAGTGAATCGGAGATCGTGAGTCTGTGTTCGGAGTTTCTTAACGCAGCTACGGATCCAA 956
Query 1024 CGGCGACGTCGATGCAGTGGATCATGGCGATCATGGTGAAGTATCCAGAGATACAGAGGA 1083
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 957 CGGCGACGGCGATGCAGTGGATCTTGGCGATCATGGTGAAGTATCCAGAGATACAGAGGA 1016
Query 1084 AAGTATACGAGGAAATGAAGACTGTGTT---CGCCGgagaagaagaagaaagagaagaga 1140
|||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 1017 AAGTATACGAAGAAATGAAGAGTGTGTTGTTCGCCGGAGAAGAAGAGGAAAGAGAAGAGA 1076
Query 1141 tcagagaagagGATTTGGGGAAGTTGAGTTACCTCAAAGCTGTGATCTTGGAGTGTCTAA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1077 TCAGAGAAGAGGATTTGGGGAAGTTGAGTTACCTCAAAGCTGTGATCTTGGAGTGTTTAA 1136
Query 1201 GAAGACACCCTCCTGGTCATTACTTGTCTTACCATAAGGTCACACACGACACCGTTTTGG 1260
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GAAGACACCCACCTGGTCATTACTTGTCTTACCATAAGGTCACACACGACACCGTTTTGG 1196
Query 1261 GTGGATTTCTCATTCCGCGCCAAGGTACTATAAACTTTATGGTAGGAGAAATGGGCCGGG 1320
||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 GTGGATTCCTCGTTCCACGCCAAGGTACTATAAACTTCATGGTAGGAGAAATGGGCCGGG 1256
Query 1321 ACCCAAAAATATGGGAAGATCCTCTAACGTTCAAGCCAGAAAGATTTCTAGAGAACGGAG 1380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 ACCCAAAAATATGGGAAGATCCTCTAACGTTCAAGCCAGAAAGATTTATAGAGAACGGAG 1316
Query 1381 AAGCATGTGATTTTGATATGACGGGAACTCGCGAGATTAAAATGATGCCGTTTGGAGCGG 1440
|||| | |||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1317 AAGCCTATGATTTCGATATGACGGGAACTCGCGAGATCAAGATGATGCCGTTTGGAGCGG 1376
Query 1441 GACGACGGATGTGTCCCGGCTACGCGCTTTCGTTGCTTCACCTGGAATATTATGTGGCCA 1500
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1377 GACGACGGATGTGTCCCGGTTACGCCCTTTCGTTGCTTCACCTTGAATATTATGTGGCCA 1436
Query 1501 ATTTGGTTTGGAAATTCGAGTGGAAATGTGTGGAAGGTGAAGAAGTTGATCTATCCGAGA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ATTTGGTTTGGAAATTCGAGTGGAAATGTGTGGAAGGTGAAGAAGTTGATCTATCCGAGA 1496
Query 1561 AGCAACAGTTCATCACAATGGTCATGAAAAACCCTTTCAAAGCAAATATTTATCCAAGGA 1620
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1497 AGCAACAATTCATCACAATGGTCATGAAAAACCCTTTCAAGGCAAATATTTATCCAAGGA 1556
Query 1621 GAA-A--GTGATATTTGCTT-TTGTCATAT 1646
||| | ||||||||||||| |||| ||||
Sbjct 1557 GAAGAAAGTGATATTTGCTTATTGTTATAT 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5