BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03480.1 Length=1502 Score E Sequences producing significant alignments: (Bits) Value Ahg317230 jgi|Araly1|317230|fgenesh1_pm.C_scaffold_3000246 2058 0.0 Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1 259 4e-68 > Ahg317230 jgi|Araly1|317230|fgenesh1_pm.C_scaffold_3000246 Length=1362 Score = 2058 bits (1114), Expect = 0.0 Identities = 1270/1348 (94%), Gaps = 0/1348 (0%) Strand=Plus/Plus Query 34 ATGGACCATCAAGTGTCTCTGCCACAATCTACCACCACTGGTCTTTCTTTCAAGGTGCAT 93 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGACCATCAAGTGTCTCTGCCACAATCTACCACCACTGGTCTCTCTTTCAAGGTGCAT 60 Query 94 CGCCAGCAGCGGGAGCTAGTCACTCCGGCTAAACCAACGCCACGAGAGCTCAAGCCTCTC 153 |||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 CGCCAGCAGCCGGAGCTAATCACTCCGGCTAAACCAACTCCACGAGAGCTCAAGCCTCTC 120 Query 154 TCCGACATAGACGACCAACAAGGACTAAGATTTCAAATTCCAGTTAtttttttCTATAGA 213 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 TCCGACATAGATGACCAACAAGGACTAAGATTTCAAATTCCAGTTATATTTTTCTATAGA 180 Query 214 CCTAACCTTTCAAGTGATCTTGATCCGGTCCAGGTGATAAAGAAAGCCCTCGCCGATGCG 273 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 181 CCTAACCTTTCAAGTGATCTCGATCCGGTCCAAGTGATAAAGAAAGCCCTCGCCGATGCG 240 Query 274 CTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAACTCGCG 333 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTGGTTTACTACTATCCATTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAACTCGCG 300 Query 334 GTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTTGCT 393 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 301 GTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGTCGCTTACT 360 Query 394 GAGCTGGAAGAGGCTGATGCTCTTCTTCCTCCATTCCCTTTCCTAGAAGAGCTTCTCTTT 453 ||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 361 GAGTTGGAGGAGGCTGATGCTCTTCTTCCTCCGTTCCCTTGCCTAGAAGAGCTTCTCTTT 420 Query 454 GATGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTGCTTCTCGTCCAGGTCACGCGA 513 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 421 GATGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTCCTTCTCGTCCAGGTCACGCGC 480 Query 514 TTGAAATGCTGTGGATTTATCTTCGCACTCCGCTTCAACCATACCATGACCGATGGAGCC 573 ||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 481 TTGAAATGCAGCGGATTTATCTTTGCCCTCCGCTTCAACCATACCATGACCGATGGAGCC 540 Query 574 GGCCTGTCGCTCTTTCTGAAATCACTATGCGAGTTGGCGTGTGGGCTTCACGCACCCTCG 633 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 GGCCTGTCGCTCTTTCTGAAATCACTATGCGAGTTGGCGTGTGGGCTTCACGTGCCCTCG 600 Query 634 GTTCCACCCGTATGGAACCGACACTTGTTGACTGTGAGTGCTTCGGAGGCGCGTGTGACC 693 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTTCCACCAGTATGGGACCGACACTTGTTGACTGTGAGTGCTTCGGAGGCGCGTGTGACT 660 Query 694 CACACACACCGTGAGTACGATGATCAGGTGGGAATCGATGTGGTCGCCACTGGACACCCT 753 ||||||||||||||||| || || ||||||| ||||||||||||||||||||| ||||| Sbjct 661 CACACACACCGTGAGTATGAAGAACAGGTGGCCATCGATGTGGTCGCCACTGGAGACCCT 720 Query 754 TTGGTTAGCCGGTCTTTCTTTTTCAGAGCAGAAGAGATCTCCGCTATAAGGAAACTCCTT 813 |||||||||||||||||||||||||| || || ||||| ||||| ||| ||||||| ||| Sbjct 721 TTGGTTAGCCGGTCTTTCTTTTTCAGGGCGGAGGAGATTTCCGCCATACGGAAACTTCTT 780 Query 814 CCGCCTGATCTACACAATACCTCATTTGAAGCTTTGTCGTCATTTTTGTGGCGTTGTCGG 873 ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 781 CCGCCCGATCTCCACAATACCTCATTTGAAGCCTTGTCGTCATTTTTGTGGCGTTGTAGG 840 Query 874 ACTATTGCGTTGAATCCTGACCCCAACACTGAGATGCGTCTAACTTGCATCATCAACTCG 933 || ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 841 ACAATTGCGTTGAAACCTGATCCCAACACTGAGATGCGACTAACTTGTATCATCAACTCG 900 Query 934 CGTTCCAAGCTTAGAAACCCACCGCTAGAGCCTGGTTACTACGGAAATGTGTTTGTCATT 993 |||||||||||||| |||||||| ||| ||| |||||||||||||||||||| |||||| Sbjct 901 CGTTCCAAGCTTAGCAACCCACCACTATCGCCGGGTTACTACGGAAATGTGTTCGTCATT 960 Query 994 CCCGCGGCAATAGCGACAGCAAGAGATCTAATAGAGAAACCGCTTGAGTTTGCTTTGAGG 1053 |||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||| Sbjct 961 CCCGCGGCAATAGCAACAGCAAGAGATCTTATGGAGAAACCTCTTGAGTTTGCTTTGAGG 1020 Query 1054 TTGATACAAGAAACGAAGTCAAGTGTAACCGAGGACTACGTCCGTTCAGTGACCGCCCTA 1113 |||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||| Sbjct 1021 TTGATACAAGAAACGAAGTCAAGTGTGACTGAGGACTACGTCCGCTCAGTGACTGCCCTA 1080 Query 1114 ATGGCGACTAGAGGCCGGCCTATGTTTGTGGCATCAGGGAACTACATAATATCGGACTTG 1173 ||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||| || Sbjct 1081 ATGGCCACTAGAGGCCGGCCTATGTTTGTGGCAGCGGGGAACTACATCATATCGGATTTA 1140 Query 1174 AGACATTTTGATTTAGGAAAAATTGATTTTGGACCGTGGGGTAAGCCAGTGTACGGTGGA 1233 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1141 AGACACTTTGATTTAGGAAAAGTTGATTTTGGACCGTGGGGTAAGCCAGTGTACGGTGGA 1200 Query 1234 ACCGCTAAGGCCGGTATCGCGCTTTTCCCGGGAGTGAGCTTCTACGTGCCGTTTAAGAAT 1293 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1201 ACCGCTAAGGCCGGTATCGCGCTTTTTCCAGGAGTGAGCTTCTACGTGCCGTTTAAGAAT 1260 Query 1294 AAAAAAGGTGAGACAGGTACAGTTGTGGCGATTAGCTTGCCGGTACGGGCGATGGAGACG 1353 |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| | Sbjct 1261 AAAAAAGGTGAGACGGGTACCGTTGTGGCGATTAGCTTGCCGGTGCGGGCAATGGAGAGG 1320 Query 1354 TTCGTAGCAGAGCTAAATGGAGTGCTAA 1381 |||||||||||||||||||||||| ||| Sbjct 1321 TTCGTAGCAGAGCTAAATGGAGTGTTAA 1348 > Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1 Length=1355 Score = 259 bits (140), Expect = 4e-68 Identities = 284/352 (81%), Gaps = 16/352 (5%) Strand=Plus/Plus Query 272 CGCTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCA-AACCGGAAACTC 330 |||||||||||||||| ||||| || ||||||||||||||| || ||||||||||| Sbjct 179 CGCTGGTTTACTACTACCCGTTTGCAGGTAGGCTCCGGGAA-GGACAGAACCGGAAACTT 237 Query 331 GCGGTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTT 390 || |||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||| Sbjct 238 GCCGTGGACTGCACCGGTGAAGGCGTTTTGTTCATTGAGGCTGATGCTGACGTGACACTT 297 Query 391 GCTGAGCTGGAAGAGGCTGATGCTCTTCTTCCTCCATTCCCTTTCCTAGAAGAGCTTCTC 450 | |||| | |||||| ||||||||| ||||||||||||| | | ||||||||||| Sbjct 298 GTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCTCCATTCCCTTGCTTTGAAGAGCTTCTG 357 Query 451 TTTGA-TGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTGCTTCTCGTCCAGGTCAC 509 ||||| | | ||||| |||||||| |||| ||||||||| || | ||| | |||||||| Sbjct 358 TTTGACT-TAGAAGGTTCTAGTGAAATGCTCAACACTCCTTTGATGCTCATGCAGGTCAC 416 Query 510 GCGATTGAAATGCTGTGGATTTATCTTCGCAC-TCCGCT-TCAACCA--TACCATGACCG 565 ||| || |||||| | || ||||||||||| | |||| | ||||||| || ||| | | Sbjct 417 GCGCTTAAAATGCGGCGGTTTTATCTTCGC-CGTCCG-TATCAACCACGTA--ATGTCGG 472 Query 566 ATGGAGCCGGCCTGTCGCTCTTTCTGAAATC-ACTATGCGAGTT-G-GCGTG 614 | | ||||| || ||||||||| ||| | | | |||||||| | ||||| Sbjct 473 ACGCTGCCGGTCTCAAGCTCTTTCTCAAAACGA-TGTGCGAGTTCGTGCGTG 523 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56221201620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5