BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03490.1 Length=1013 Score E Sequences producing significant alignments: (Bits) Value Ahg477595 jgi|Araly1|477595|fgenesh2_kg.3__296__AT3G03490.1 1338 0.0 > Ahg477595 jgi|Araly1|477595|fgenesh2_kg.3__296__AT3G03490.1 Length=926 Score = 1338 bits (724), Expect = 0.0 Identities = 873/941 (93%), Gaps = 26/941 (3%) Strand=Plus/Plus Query 42 tctcctctctctctctGATATTCTTCGT-CGTCCCATCTGCGAATTGTTTACACAGAGAT 100 ||| || ||||||||||||||||||| | | |||||| | ||||||||||| |||| || Sbjct 11 TCTTCT-TCTCTCTCTGATATTCTTCCTAC-TCCCATATTCGAATTGTTTAGACAGGGAG 68 Query 101 ATAGAGAGGAAGAGAACCGCCTAAGGAAAATGGCGAACAGTCACACCGATGACTTGGACG 160 |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 69 ATAGAGAGGAAGAGAAACGCCTAAGGAAAATGGCCAACAGTCACACCGATGACTTAGACG 128 Query 161 AGCTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATCTTTCTCATCaaagaaatc 220 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 129 AGCTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATC-TT-TC-TCAAAGAAATC 185 Query 221 aaagggaagctcaagaggaggaggaaaagaagaggaaagaagagaCGGTTTTATTACCGA 280 |||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||| Sbjct 186 AAAGGGAAGCGCAAGAGGAGGA-G--AAGAAGAAGAAAGAAGAGACGGTTTTATTACCGA 242 Query 281 GTGGAGTTCAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAGAGAGGAAAAC 340 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | Sbjct 243 GTGGAGTTCAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAAAAAGGAAAGC 302 Query 341 AAAAGGTTTCCAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTA 400 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 AAAAGGTTTCTAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTA 362 Query 401 GGGAAACTGTCAAAGGATTGGAATCCATTTCTTCTAAGCAGCTGCCTGCTTCTGATGATG 460 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 363 GGGAAACTGTCAAAGGATTGGAATCCATTTCTTCTAAGCAGCTGCCAGCTTCTGATGATG 422 Query 461 ATGGAATGGTTGAGGATTTTCTCAAACAATTCGAGGATCTTGCTGGATCTAAGGACTTGG 520 ||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||| Sbjct 423 ATGGAATGGTTGAGGATTTTCTCAAGCAATTTGAGGATCTTACTGGATCCAAGGACTTGG 482 Query 521 AATCAATAGTCGAGACGATGATGCAACAGCTATTGTCGAAGGATATTCTCCACGAACCAA 580 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 483 AATCAATAGTCGAAACGATGATGCAACAGCTATTGTCGAAGGATATTCTTCACGAACCAA 542 Query 581 TGAAGGAGCTTGGCGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAAGCA 640 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 543 TGAAGGAGCTTGGTGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAACCA 602 Query 641 AAGAAGACTACAAACGATATTCACAACAGTACAAACTAATAGAAGAACTCAATGCAGTGT 700 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 603 AAGAAGACTACAAACGTTATTCACAACAGTACAAACTAATAGAAGAACTCAATGCGGTAT 662 Query 701 ACGAGAATGAACCTAACAATTCATCTAAGATAATGGAGATCATGCAAAAGATGCAGGAAT 760 ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 663 ACGAGAATGAACCGAACAATTCTTCTAAGATAATGGAGATCATGCAGAAGATGCAAGAAT 722 Query 761 GTGGACAACCCCCGAGTGATATAGTTAAAGAGATTGATCCCGGGTTTGATTTCGCAAGTC 820 | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 723 GCGGACAACCCCCGAGTGATATAGTTAAAGAGATCGATCCCGGGTTTGATTTTGCAAGTC 782 Query 821 TTGGCCAAATATCCCCAGAGATGCTGGAGTCCTCGCCAAATTGCTGTATCATGTGATGGG 880 | ||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 783 TAGGCCAAATATCTCCGGAGATGCTAGAGTCCTCGCCAAATTGCTGTATAATGTGATGGG 842 Query 881 GCCAAACAGCTTCAAGAATTATATGTCGTTTGTTTTTCTCTTGTGTTATAAAACTCAAAA 940 ||||||||||||||| ||||| || | | || | || || |||||||||||| Sbjct 843 GCCAAACAGCTTCAAAAATTA-AT-TA-T--GT----C----GT-TT-TAAAACTCAAAA 887 Query 941 GCTCTGTTTCAATTATGATTGGAATTTCACACACACAAAAA 981 ||||||||||||||||||||||||||||||||| | ||||| Sbjct 888 GCTCTGTTTCAATTATGATTGGAATTTCACACA-A-AAAAA 926 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37665441996 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5