BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03570.1 Length=2325 Score E Sequences producing significant alignments: (Bits) Value Ahg477602 jgi|Araly1|477602|fgenesh2_kg.3__303__AT3G03570.1 3373 0.0 Ahg923833 jgi|Araly1|923833|scaffold_105114.1 1378 0.0 > Ahg477602 jgi|Araly1|477602|fgenesh2_kg.3__303__AT3G03570.1 Length=2273 Score = 3373 bits (1826), Expect = 0.0 Identities = 2069/2183 (95%), Gaps = 30/2183 (1%) Strand=Plus/Plus Query 1 GTTGGTAAACCGTC-CGGTACAAGATTTTTAGTCATCCAAAAGGTC-GATTCGCCGATCT 58 |||||||||||| | |||||| | | ||||||||||||| ||| ||||||||||||| Sbjct 1 GTTGGTAAACCG-CTCGGTAC-A-A----TAGTCATCCAAAA-GTCGGATTCGCCGATCT 52 Query 59 AGAAGACGACGACGACGACTACCAAACACTCCGATCAACGGTCCTCCGATTCTCTCTCGC 118 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 53 ---AGACGACGACGACG---ACCAAACACTCCGATCAACGGTCCTCCGATTCCCTCTCGC 106 Query 119 TTTCGTGGCGACCTCAAAAATGTCGCAGCAAATCAGCGGTAATAATAATATCCCGCTGAG 178 |||||| ||||| | |||||||||||||||||||||| |||||||||||||||||| Sbjct 107 TTTCGTCTTGACCTGAGAAATGTCGCAGCAAATCAGCGG---TAATAATATCCCGCTGAG 163 Query 179 TGAAGTTTACTGGTCTCTCGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 238 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 164 TGAAGTTTACTGGTCTCTTGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 223 Query 239 GCCCTTCTATGAACGCTCCAGGTATGAGAACTATTTCTTCAAGGTATTCAAAGTATACAC 298 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 224 GCCCTTCTATGAACGCACCAGGTATGAAAACTATTTCTTCAAGGTATTCAAAGTATACAC 283 Query 299 ACAACTATGGAAGTTTCAGCAAGAGAATAGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 358 ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 284 ACAGTTATGGAAGTTTCAGCAAGAAAATCGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 343 Query 359 ATGGGAGATTGGAGAGATCGCTTCTCGCATTGCCCAGCTTTACTATGGACATTATATGCG 418 ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 344 ATGGGAGATTGGAGAGATCGCATCTCGAATTGCACAGCTTTACTATGGACATTATATGCG 403 Query 419 AACAAGTGATGCTGGTTACTTATCCGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 478 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 404 GACAAGTGATGCCGGTTACTTATCTGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 463 Query 479 GGAGTACTTCAAAGATGGATTGTTTCAGGATCTCAATATTGCAAACAAGCAGCTTCGGTT 538 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 464 GGAGTACTTCAAAGAAGGATTGTTTCAGGATCTCAATATTGCAAACAAACAGCTACGGTT 523 Query 539 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTTCTTGGCCGCCGTGAGATGGTGCATCAACT 598 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 524 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTCCTTGGCCGCCGTGAGATGGTGCATCAACT 583 Query 599 CGTTGATCAGTTTAAACGGTTGATTGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 658 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 584 TGTTGATCAGTTTAAACGGTTGATAGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 643 Query 659 TAAGGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCGGACACTGCATT 718 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 644 TAAAGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCTGACACTGCATT 703 Query 719 CATGAACATTAGACCTCTAAGATACAGTCTTGTATTGGATCCTAATCTGGATGCTGGTAC 778 ||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 704 TATGAATATCAGACCTCTAAGATACAGTCTTGTACTGGATCCTAATTTGGATGCTGGTAC 763 Query 779 TCCGCGTGCAAGTAGGTCTTTAAGGTTGACGGATGCTATCTTGAGCAGTTATTACTGTAA 838 |||||||||||||| |||||||||||||||||||| ||||||||||| || || | ||| Sbjct 764 ACCGCGTGCAAGTAGATCTTTAAGGTTGACGGATGCAATCTTGAGCAGCTACTATTATAA 823 Query 839 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 883 Query 899 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCTAAAATGGGTCAGAATGCTCCCGT 958 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 884 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCAAAAATGGGTCTGAATGCTCCCGT 943 Query 959 TGGAGTTGCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1018 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 TGGAGTTTCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1003 Query 1019 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACCATTTG 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1004 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACTATTTG 1063 Query 1079 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGATTGG 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1064 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGAATGG 1123 Query 1139 ACAGATTTCATCATCTCCCTTGAGTGCTAGAAGTGCAACCAGTGTTGAGGAGAATATCTT 1198 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1124 ACAGATTTCATCATCTCCTTTGAGTGCTAGAAGTGCAACCAATGTTGAGGAGAATATCTT 1183 Query 1199 GAGAGACTTTGAATCTCACACAATCAAACAAGAGACAGAACCATCACTTCAAATTACGCC 1258 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || Sbjct 1184 GAGAGACTTTGAATCTCACACAATCAAACAAGAGAGAGACCCATCACTTCAAATTACCCC 1243 Query 1259 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTTTGTC 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1244 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTCTGTC 1303 Query 1319 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATATATCCCTCTGATTTAGTTCCATT 1378 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1304 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATCTACCCCTCTGATTTAGTTCCATT 1363 Query 1379 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAAAATAT 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1364 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAGAATAT 1423 Query 1439 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCGTTACTTCTGTCTCCATCACATACTCCTCC 1498 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1424 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCATTGCTTCTGTCTCCATCACATACTCCTCC 1483 Query 1499 GCTTATCTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1558 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1484 GCTTATTTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1543 Query 1559 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGAGATTTCCGCCTCTGATATGGAAACGGA 1618 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1544 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGGGATTTCCGCCTCTGATATGGAAACGGA 1603 Query 1619 TATTTTTACTAAGGCCGAGAAGCTTCTTTCCTCGTCTATGAACGAATGGGCTTCGACATT 1678 ||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1604 TATCTTAACTAAGGCCGAGAAGCTTCTTTCCTCGTTTATGAACGAATGGGCTTCGACATT 1663 Query 1679 GGCAACATCAGATACCCTTCACCCTGTTTGGTCACAGATACTAAAAGATCCCTTCTTGAG 1738 |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1664 GGCAACATCAGATACCCTTCACCCAGTTTGGTCACAAATACTAAAAGATCCATTCTTGAG 1723 Query 1739 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1724 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1783 Query 1799 CAATAACAAACAAAATCAGCCAGAGTGCTGTCCGTCTCTCCCAGAATCGCTATTACCAAC 1858 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 1784 CAATAACAAACAAAATCAGCCAGAGTGCTTTCCGTCTCTCCCAGAATCGCTAGTACCAAC 1843 Query 1859 TGCTCCTGCTGTTCAATCCGCTGTGTTTCAGATGGCCAATGTATTTGGTGCTACAAGTAA 1918 ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||| Sbjct 1844 TGCTCCTGCCGTTCAATCCGCTGTGCTTCTGATGGCCAATGTATTTGGGGCTACAAGTAA 1903 Query 1919 ATTTACTATACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGAAGCTTACCTCTGCGA 1978 ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1904 ATTTACTCTACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGATGCT-ACCTCTGCGA 1962 Query 1979 CGATAAGAGCTTCGGTCTGAAA-TATTCTTGTT-CAAATCGGGAATCTCGATTTGGTTTC 2036 |||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||| Sbjct 1963 CGATAAGAGCTTCGGTCTGAAAATATTCTT-TTGCAAATTGGGAATCTCGATTTGGTTTC 2021 Query 2037 CCGGTAAGGTATACTAT--TATTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2094 || || |||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 2022 CCCTTAGGGTAAACTATGGTTTTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2081 Query 2095 TATGACTGAACATCTTTTGAGATTAATGGTGCAAGATCATTTTGGTGTGAACAAAGTAA- 2153 |||||| |||||||||||||||| ||||| ||||| |||||||||||| |||| ||| Sbjct 2082 TATGACCAAACATCTTTTGAGATTTATGGTTCAAGAACATTTTGGTGTGC-CAAATTAAC 2140 Query 2154 ---GTGTTTGATGCAGAACATGT 2173 |||||||||||||||||||| Sbjct 2141 AAAGTGTTTGATGCAGAACATGT 2163 Score = 119 bits (64), Expect = 1e-25 Identities = 97/111 (87%), Gaps = 9/111 (8%) Strand=Plus/Plus Query 2222 TTGTATATTGA-TCAACTTTTACAGTCTAATGGAAATTCACCATCTTCTGTAATTCGATC 2280 ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 2163 TTGTATATTGATTCAACTTTTACAGTCTAATGGAAATTCAACATCTACTGTAATTCGGTC 2222 Query 2281 GAGAAAATAAGAGGTTCACCA-CTG-----T-T-GATTGCGTTGTCGGTAT 2323 ||| |||||||||||||||| ||| | | ||||||||||||||||| Sbjct 2223 AAGAGAATAAGAGGTTCACCATCTGAACACTGTTGATTGCGTTGTCGGTAT 2273 > Ahg923833 jgi|Araly1|923833|scaffold_105114.1 Length=1235 Score = 1378 bits (746), Expect = 0.0 Identities = 807/836 (97%), Gaps = 5/836 (1%) Strand=Plus/Plus Query 513 AATATTGCAAACAAGCAGCTTCGGTTTCTTGCAAGGTTTCTTATGGTGTGTTTGGTTCTT 572 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 352 AATATTGCAAACAAACAGCTACGGTTTCTTGCAAGGTTTCTTATGGTGTGTTTGGTCCTT 411 Query 573 GGCCGCCGTGAGATGGTGCATCAACTCGTTGATCAGTTTAAACGGTTGATTGATGAATGC 632 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 412 GGCCGCCGTGAGATGGTGCATCAACTTGTTGATCAGTTTAAACGGTTGATAGATGAATGC 471 Query 633 AAGAGGACATTCCAGGAAACCGATTTTAAGGAATGGAAGGTGGTGGCGCAGGAAATAGTT 692 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 472 AAGAGGACATTCCAGGAAACCGATTTTAAAGAATGGAAGGTTGTGGCGCAGGACATAGTT 531 Query 693 AGATTTCTGAAATCGGACACTGCATTCATGAACATTAGACCTCTAAGATACAGTCTTGTA 752 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 532 AGATTTCTGAAATCTGACACTGCATTTATGAACATTAGACCTCTAAGATACAGTCTTGT- 590 Query 753 T-TGGATCCTAATCTGGATGCTGGTACTCCGCGTGCAAGTAGGTCTTTAAGGTTGACGGA 811 | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 591 TCTGGATCCTAATCTGGATGCTGGTACACCGCGTGCTAGTAGATCTTTAAGGTTGACGGA 650 Query 812 TGCTATCTTGAGCAGTTATTACT-GTAACGAGGTCAAGTATTCGGAGCTCACGCTCGATT 870 ||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 651 TGCAATCTTGAGCAGCTATTA-TCATAACGAGGTCAAGTATTCGGAGCTCACGCTCGATT 709 Query 871 CTTTTAGGATGCTTCAATGCTTAGAGTGGGAACCGAGTGGTTCACTATATCAATCAACTG 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 CTTTTAGGATGCTTCAATGCTTAGAGTGGGAACCGAGTGGTTCACTATATCAATCAACTG 769 Query 931 GTGCTAAAATGGGTCAGAATGCTCCCGTTGGAGTTGCTCGTATTAACTCCCAGAGCATGA 990 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 770 GTGCTAAAATGGGTCAGAATGCTCCCGTTGGAGTTTCTCGTATTAACTCCCAGAGCATGA 829 Query 991 ATGATCCTACTTTGCCACCTAACCCTCGCAAAGCTGTCCTTTATCGTCCATCCATAACAC 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 ATGATCCTACTTTGCCACCTAACCCTCGCAAAGCTGTCCTTTATCGTCCATCCATAACAC 889 Query 1051 ATTTTTTGGCTGTTTTGGCCACCATTTGTGAGGAGCTTCCTTCTCATGGCATTCTTTTAT 1110 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 890 ATTTTTTGGCTGTTTTGGCCACTATTTGTGAGGAGCTTCCTTCTCATGGCATTCTTTTAT 949 Query 1111 TATATCTGTCTGCTTCTGGCAAGATTGGACAGATTTCATCATCTCCCTTGAGTGCTAGAA 1170 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 950 TATATCTGTCTGCTTCTGGCAAGAATGGACAGATTTCATCATCTCCTTTGAGTGCTAGAA 1009 Query 1171 GTGCAACCAGTGTTGAGGAGAATATCTTGAGAGACTTTGAATCTCACACAATCAAACAAG 1230 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 GTGCAACCAATGTTGAGGAGAATATCTTGAGAGACTTTGAATCTCACACAATCAAACAAG 1069 Query 1231 AGACAGAACCATCACTTCAAATTACGCCATCTGGTCAGTCTTTGAGGCAAATCAGTGAGG 1290 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1070 AGAGAGACCCATCACTTCAAATTACGCCATCTGGTCAGTCTTTGAGGCAAATCAGTGAGG 1129 Query 1291 ACGCAGTCAGTACCCCATGTGGTTTGTCTTTTGGCAGTCATGGGCTCACAGG-ATC 1345 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1130 ACGCAGTCAGTACCCCATGTGGTCTGTCTTTTGGCAGTCATGGGCTCACAGGTATC 1185 Score = 542 bits (293), Expect = 5e-153 Identities = 331/349 (95%), Gaps = 3/349 (1%) Strand=Plus/Plus Query 117 GCTTTCGTGGCGACCTCAAAAATGTCGCAGCAAATCAGCGGTAATAATAATATCCCGCTG 176 |||||||| | ||||| | |||||||||||||||||||||| |||||||||||||||| Sbjct 1 GCTTTCGTCGTGACCTGAGAAATGTCGCAGCAAATCAGCGG---TAATAATATCCCGCTG 57 Query 177 AGTGAAGTTTACTGGTCTCTCGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGAC 236 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 58 AGTGAAGTTTACTGGTCTCTTGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGAC 117 Query 237 TTGCCCTTCTATGAACGCTCCAGGTATGAGAACTATTTCTTCAAGGTATTCAAAGTATAC 296 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 118 TTGCCCTTCTATGAACGCTCCAGGTATGAAAACTATTTCTTCAAGGTATTCAAAGTATAC 177 Query 297 ACACAACTATGGAAGTTTCAGCAAGAGAATAGGCAGAAGCTTGTTGAAGCTGGACTTAAG 356 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 178 ACACAGTTATGGAAGTTTCAGCAAGAGAATCGGCAGAAGCTTGTTGAAGCTGGACTTAAG 237 Query 357 AGATGGGAGATTGGAGAGATCGCTTCTCGCATTGCCCAGCTTTACTATGGACATTATATG 416 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 238 AGATGGGAGATTGGAGAGATCGCATCTCGAATTGCACAGCTTTACTATGGACATTATATG 297 Query 417 CGAACAAGTGATGCTGGTTACTTATCCGAGTCCTATGTATTCTACGAAG 465 || ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 298 CGGACAAGTGATGCCGGTTACTTATCCGAGTCTTATGTATTCTACGAAG 346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87569473255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5