BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03773.2

Length=965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903199 jgi|Araly1|903199|Al_scaffold_0003_327                     749    0.0  


> Ahg903199 jgi|Araly1|903199|Al_scaffold_0003_327
Length=453

 Score =  749 bits (405),  Expect = 0.0
 Identities = 437/453 (96%), Gaps = 0/453 (0%)
 Strand=Plus/Plus

Query  163  ATGATTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAACTGTC  222
            |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGAGTCGCAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAGGTTTACCTAACTGTC  60

Query  223  GCCTTACCTGATGCGAAGGACATTTCGGTGAAGTGTGAGCCTCAGGGTCTATTCAGTTTC  282
            || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   GCATTACCTGATGCGAAAGACATTTCGGTCAAGTGTGAGCCTCAGGGTCTATTCAGTTTC  120

Query  283  TCTGCTCTTGGTGCCCAAGGCGAGCGCTTTGAATTCAGCTTGGAGTTATATGGGAAGATT  342
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCTGCTCTTGGTGCTCAAGGCGAGCGCTTTGAATTCAGCTTGGAGTTATATGGGAAGATT  180

Query  343  ATGACAGAATATCGGAAGAATGTAGGACTAAGGAACATCATATTTTCAATTCAGAAAGAA  402
            ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  ATGCCAGAATATCGGAAGAATGTAGGGCTAAGGAACATCATATTTTCAATTCAGAAAGAA  240

Query  403  GAGAGAAGCTGGTGGACACGACTGCTGAAATCGGAAGAGAAACCTGCACCTTACATCAAA  462
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  241  GAGAAAAGCTGGTGGACACGACTGCTGAAATCGGAAGAGAAACCCGCACCTTACATCAAA  300

Query  463  GTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTCTGAAACAGCCTCTGAT  522
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  GTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTCTGAAACGGCCTCTGAT  360

Query  523  GATGAGAGTGCATTTGTTAATCAAGATAGTGAAAGCAGCGATGACGATGGATTGCTCTAT  582
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  361  GATGAGAGTGCATTCGTTAATGAAGATAGTGAAAGCAGCGATGACGATGGATTGCTCTAT  420

Query  583  CTTCCTGATCTGGAAAAGGCAAGAAACAAGTAG  615
            |||||||||||||||||||| |||| |||||||
Sbjct  421  CTTCCTGATCTGGAAAAGGCGAGAAGCAAGTAG  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35835541980


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5