BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03860.1 Length=1505 Score E Sequences producing significant alignments: (Bits) Value Ahg477638 jgi|Araly1|477638|fgenesh2_kg.3__339__AT3G03860.1 1797 0.0 Ahg941333 jgi|Araly1|941333|scaffold_601877.1 460 1e-128 Ahg925874 jgi|Araly1|925874|scaffold_201435.1 278 1e-73 Ahg922044 jgi|Araly1|922044|scaffold_103325.1 198 9e-50 > Ahg477638 jgi|Araly1|477638|fgenesh2_kg.3__339__AT3G03860.1 Length=1387 Score = 1797 bits (973), Expect = 0.0 Identities = 1107/1170 (95%), Gaps = 15/1170 (1%) Strand=Plus/Plus Query 332 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCAATAGCCGTGTCATGCTTT 391 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 222 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCGATAGCTGTGTCATGCTTT 281 Query 392 ACGTCTGGGTCTGCTTCATCACC-AGTGGACTTTTCCGTTTGCAATTACGAATTCGAGCT 450 ||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 282 ACGTCCGGGTCCGCTTCATC-CCGAGTGGACTTTTCCGTTTGCAATTACGAATTCGAGGT 340 Query 451 GTTTCGATTCGATTTAGAGGCCAAATGTCCTCCTTCTCTGTATCCAACTCCTCCTATTGA 510 ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| Sbjct 341 CTTTCGATTCGATTTAGAAGCCAAATGTCCTCCTTCTCTCTATCCAAGTCCTCCTATTGA 400 Query 511 GGTAGATGGAGACTCACTAGACAGGCTAATGGCTTCACAA-CATGGAAATGCTTATATGT 569 ||||||||||| ||| || |||||| |||||| |||| || ||||||||||||||||||| Sbjct 401 GGTAGATGGAGGCTCTCTGGACAGGGTAATGGATTCA-AATCATGGAAATGCTTATATGT 459 Query 570 CTGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTTGATA 629 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 460 CAGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTCGATA 519 Query 630 TGTTGAGTTCCATGTTTCCTCAAATACAACACCTAGCTGTGGAGCATTCTCAAGCACTGC 689 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 520 TGTTGAGTTCGATGTTTCCTCAAATACAGCACCTAGCTGTGGAGCATTCTCAAGCACTGC 579 Query 690 CATCTGTCTTTTCTAGGTATGGTATCCATAGCTTACCTTCAATCCTGATGGTAAATCAAA 749 ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 580 CATCTATCTTTTCTAGCTATGGTATCCATAGCTTACCTTCAATCCTGATGGTGAATCAAA 639 Query 750 CTTTAAATGCTCGGTACCATGGTCGAAAGGATCTTATATCCCTGATTGAGTTTTATGAAG 809 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 640 CTTTAAAGGCTCGGTACCATGGTCGAAAGGATCTTACATCCCTGATTGAGTTTTATGAAG 699 Query 810 AGGCAACAGGCCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAAATG 869 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 700 AGGCAACAGGTCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAGACG 759 Query 870 CCGGTGATGGTAACTTGATCACATGGTTGCGCAAGGGGACATCTATTAGAGAAATATTCA 929 |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 760 CCGGCGATGGTAACTTGATCACATGGTTGCGCAACGGGACATCTATCAGAGAAATATTCA 819 Query 930 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTTG 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 820 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTCG 879 Query 990 TCTTCCCCATAGCTGAATCCCGCATGAGAGCGTTATGGGCTTCTTACGTTGCCAATTTGA 1049 ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||| Sbjct 880 TCTTCCCCATAGCTGAATCCCGCATGAAAGCGTTATGGGCTTCTTATGTTCCCAATCTGA 939 Query 1050 ACTTGGGAAGATTTGGAGAGATAAGCCAACTGTTCAACCGTGGTATTCACATGGTCGATG 1109 || ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 940 ACCTGGAAAGATTTGGAGAGATAAGCCACCTGTTCAGCCGTGGTATTCACATGGTCGATG 999 Query 1110 TGAGGAGGTTATGGTTGAAACTAAGTCTCGTCAAAACAAGAAACTTCCATGAAAGGGCAA 1169 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 1000 TGAGGAGGTTATGGTTGAAACTAAGCCTCGTCAAAACAAGGAACTTCCATGAAAGAGCAA 1059 Query 1170 AGAACGCACAAGCTTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1229 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1060 AGAACGCACAAGCCTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1119 Query 1230 ACCAATCCTGATCTCAAGGGTAAGATCATGTCAGTATTGGGAAGAGATGAGCTTTTAAGT 1289 |||||||||||||| |||||||||||| |||||| |||||||||||||||||||| |||| Sbjct 1120 ACCAATCCTGATCTTAAGGGTAAGATCCTGTCAGCATTGGGAAGAGATGAGCTTT-AAGT 1178 Query 1290 GTGTGCTGGAAATCTGAGAGTTCCTTTAATGAA-----TGTTATATGACTTATTTGAGTT 1344 |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1179 GTGTTCTGGAAATCTGAGAGTTCCTTTAATGAAACCCCTGTTATATGACTTTTTTGAGTT 1238 Query 1345 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1298 Query 1405 CT-T-T--CTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTTTGGCCTCATTTCTT 1460 || | | |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1299 CTATCTTTCTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTT-GGCCTCATTTCTT 1357 Query 1461 TTACTGAATAATTTGATTGAGTCAGGTAAA 1490 ||||||||||||||||||||||||| |||| Sbjct 1358 TTACTGAATAATTTGATTGAGTCAGCTAAA 1387 Score = 206 bits (111), Expect = 5e-52 Identities = 193/230 (84%), Gaps = 16/230 (7%) Strand=Plus/Plus Query 1 GTGCTCCAGAAT-TTGTAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACGTC 59 |||||||||||| || |||||||||||||||||||||||||||||||||||||||| | Sbjct 1 GTGCTCCAGAATATT-AAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACATG 59 Query 60 GAACGAGACCAATAGAGCTAGCTTCTGA-TACA-TTTCGAC-TTTGGCGTTTCTCGATCT 116 ||||||||| ||| ||||| ||||||| || | |||| || |||||||||| ||||||| Sbjct 60 GAACGAGACGAAT--AGCTACCTTCTGATTAAATTTTCAACTTTTGGCGTTTTTCGATCT 117 Query 117 GTTGTTTCTGCTCCCaaataaaaa-taaaaaaaaaTCGGATCGGGGATTTCCCCAAATCG 175 ||||||||||| ||| ||||| || || ||||||||| ||||||||||||| | Sbjct 118 GTTGTTTCTGC-AAAAAAAAAAAATTAGTGAATTTTCGGATCGGAGATTTCCCCAAATTG 176 Query 176 TAAAATTAGGTTTTGTTCTTCA--T--T--T-CTAGCCCTAGCTTAGTTT 218 ||||||||||||||||||||| | | | |||||||||||||||||| Sbjct 177 TAAAATTAGGTTTTGTTCTTCGCCTCCTCGTTCTAGCCCTAGCTTAGTTT 226 > Ahg941333 jgi|Araly1|941333|scaffold_601877.1 Length=919 Score = 460 bits (249), Expect = 1e-128 Identities = 606/773 (78%), Gaps = 45/773 (6%) Strand=Plus/Plus Query 427 CGTTTGCAATTACGAATTCGAGCTGTTTCGATTCGATTTAGAGGCCAA-ATGTCCTCCTT 485 |||||||||| |||| |||||| ||||||||| ||| | || || || |||||||| || Sbjct 105 CGTTTGCAATCACGATTTCGAGGTGTTTCGATGCGAGATCGA-GCAAATATGTCCTCGTT 163 Query 486 CTCTGTATCC-AACTCCTCCTATTGAGGTAGATGGAGACTCACTAGACAGGCTAATGGCT 544 ||| ||||| | | |||||||| |||||||||||||||| ||||||| || |||| | Sbjct 164 TTCTCTATCCGAGC-CCTCCTATCGAGGTAGATGGAGACTTGCTAGACAAACTCATGGAT 222 Query 545 TCACAAC-ATGGAAATGCTTATATGTCTGTACTCTTTTATGCTTC-CTGGTGCCCATTCT 602 || ||| ||||||||||||||| || |||| |||||||| || | ||||||| || | Sbjct 223 GCA-AACAATGGAAATGCTTATACATCCATACTATTTTATGCCTCAC-GGTGCCCGTTTT 280 Query 603 CACGTGCTGTGCGCCCTAAGTTTGATATGT-TGAGTTCCATGTTTCCTCAAATACA-ACA 660 ||||||| || ||||| ||||||||| | | ||||||| ||||||||||| ||| | || Sbjct 281 CACGTGCAGTACGCCCAAAGTTTGATGT-TCTGAGTTCAATGTTTCCTCACATA-AGGCA 338 Query 661 CCTAG-CTGTGGAGCATTCTCAAGCACTGCCATCTGTCTTTTCTAGGTATGGTATCCATA 719 ||| | ||| ||||| ||||| || | ||||||||||||||||||||||||||||||| Sbjct 339 CCT-GATTGTTGAGCAATCTCAGGCTTTACCATCTGTCTTTTCTAGGTATGGTATCCATA 397 Query 720 GCTTACCTTCAATCCTGATGGTAAATCAAACTTT-AA-ATGCTCGGTACCATGGTCGAAA 777 |||| ||||||||||||||||| |||||||| | || |||| | |||||||||| ||| Sbjct 398 GCTTGCCTTCAATCCTGATGGTGAATCAAACAATGAAGATGC--GATACCATGGTCAAAA 455 Query 778 GGATCTTATATCCCTGATTGAGTTTTATGAAG-AGGCAACAGGCCTCCAACCTGTCCAGT 836 ||||||| |||||| || ||||||| ||| | ||||||| || ||||||| |||| Sbjct 456 GGATCTTGCATCCCTTATCCAGTTTTAC-AAGGAAACAACAGGTCTTAAACCTGTTCAGT 514 Query 837 ATGTGGCTGAAGGGGAACCAACAGGCTTAAATGCCGGTGATGGTAACTTGATCACATGGT 896 |||||| ||| | ||||||||| |||| | | |||||||||| ||||||||||| Sbjct 515 ATGTGGATGATGTTGAACCAACAAGCTTGGACAC---TGATGGTAACCTGATCACATGGC 571 Query 897 TGCGCAAGGGGACATCTATTAGAGAAATATTCA-AACA-AGATCCGT-TCTTGGTACTAT 953 | | ||| ||| ||||||| |||||| || || || | ||| || | | | |||||| | Sbjct 572 TACACAACGGGTCATCTATCAGAGAAGTAG-CAGAA-AGAGAGCCATATAT-GGTACT-T 627 Query 954 -C-TCTGCTGTTTATCTGTTTACAAA-TGGCAATCCTTG-TCTTCCCCAT-A-GCTGAAT 1007 | | || ||||| | | ||| ||| ||||||| ||| |||||||||| | | || | Sbjct 628 GCGT-TGATGTTTCTGTCTTTG-AAACTGGCAATT-TTGATCTTCCCCATCATGG-GA-T 682 Query 1008 CCCGCATGAGAGCGTTATGGGC-TTCTTACGTTGC-CAATTTGAACTTGGGAAGATTTGG 1065 | ||| ||| | |||||||||| || | | ||| | || | ||| ||||| | | | || Sbjct 683 CACGCTTGAAAACGTTATGGGCATTGT-ATGTTCCGCA-TCTGAGCTTGGCTATACTCGG 740 Query 1066 AGAGATAAGCCAACTGTTCAACCGTGGTATTCACATGGTCGATGTGAGGAGGTTATGGTT 1125 |||| ||||||||| || ||||| | |||||| ||||||||||||| ||||| | Sbjct 741 TGAGACAAGCCAACTCTTTGGCCGTGCCCTGCACATGATCGATGTGAGGAGACTATGGAT 800 Query 1126 GAAACTAAGTCTCGTCAAAACAAGAAACTTCCATGAAAGGGCAAAGAACGCAC 1178 |||||| || ||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 801 GAAACTGAGACTCACCAAAACAAGGAACTTCCAAGAAAGGGCAAAGAACGCAC 853 > Ahg925874 jgi|Araly1|925874|scaffold_201435.1 Length=218 Score = 278 bits (150), Expect = 1e-73 Identities = 191/208 (92%), Gaps = 14/208 (7%) Strand=Plus/Minus Query 1279 AGC-TTTTAAGTGTGTGCTGGAAATCTGAGAG----TTCCTTTAATG-AA----TGTTAT 1328 ||| |||||||||||| ||||||||||||||| ||||||||||| || |||||| Sbjct 204 AGCTTTTTAAGTGTGTTCTGGAAATCTGAGAGTTCCTTCCTTTAATGAAACCCCTGTTAT 145 Query 1329 ATGACTTATTTGAGTTTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 1388 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 ATGACTTTTTTGAGTTTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 85 Query 1389 TTCTGTTTGTGAATATCTTTCTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTTTG 1448 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| | Sbjct 84 TTCTGTTTGTGAATATCTTTCTCTCTTTTTTGTTCTATAAATTTGAG-T--CTGTTTT-G 29 Query 1449 GCCTCATTTCTTTTACTGAATAATTTGA 1476 |||||||||||||||||||||||||||| Sbjct 28 GCCTCATTTCTTTTACTGAATAATTTGA 1 > Ahg922044 jgi|Araly1|922044|scaffold_103325.1 Length=1429 Score = 198 bits (107), Expect = 9e-50 Identities = 140/154 (91%), Gaps = 10/154 (6%) Strand=Plus/Minus Query 1279 AGC-TTTTAAGTGTGTGCTGGAAATCTGAGAG----TTCCTTTAATG-AA----TGTTAT 1328 ||| |||||||||||| ||||||||||||||| ||||||||||| || |||||| Sbjct 1407 AGCTTTTTAAGTGTGTTCTGGAAATCTGAGAGTTCCTTCCTTTAATGAAACCCCTGTTAT 1348 Query 1329 ATGACTTATTTGAGTTTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 1388 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1347 ATGACTTTTTTGAGATTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 1288 Query 1389 TTCTGTTTGTGAATATCTTTCTCCCTTTTTTGTT 1422 ||||||||||||||||||||||| |||||||||| Sbjct 1287 TTCTGTTTGTGAATATCTTTCTCTCTTTTTTGTT 1254 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56335472355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5