BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03870.2
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927919 jgi|Araly1|927919|scaffold_300376.1 1314 0.0
> Ahg927919 jgi|Araly1|927919|scaffold_300376.1
Length=831
Score = 1314 bits (711), Expect = 0.0
Identities = 801/843 (95%), Gaps = 12/843 (1%)
Strand=Plus/Plus
Query 284 CAAGATCGATCAAGGAGAAGATGGATCTCGAGGATTGGGAATTAGTACTCCCCAAGAACA 343
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CAAGATCGATTAAGGAGAAGATGGATCTCGAGGATTGGGAATTAGTACTCCCCAATAACA 60
Query 344 GCTTCAAGGATCTTGATCTTGATCATGACGAGGATCATCATGGAGCCATGGTGATGGACT 403
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 61 GCTTCAAGGATCTTGATCTTGATCATGACGAGGATCATCATGGAGCGATGGTAATGGACT 120
Query 404 ACTTCCTCTGCCCATCTACTAAAGATCCTCTCCCCAAGACAGAGTCTCCTCCAAGATCCA 463
|||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||
Sbjct 121 ACTTCCTCTGCCCATCTACTAAAGATCCTCTCCCAAAAACAGAGTCTCCTCCAAGAACCA 180
Query 464 AAGTGGTCCCTAAAAAGATTCTTCAAGTTCCCATAGCTTGGGAAGCCGTGTTGGATCAAG 523
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 181 TAGTGGTCCCTAAAAATCTTCTTCAAGTTCCCATAGCTTGGGAAGCCGTTTTGGACCAAG 240
Query 524 ACAACACGAAGATACCCAATAACCCTGATCTTGAACCGGATCCGCATCCGGATCCGGATT 583
|||||||||||| ||||||||| || | |||||||||| | || ||||||||||
Sbjct 241 ACAACACGAAGAAACCCAATAA-CC-G----TGAACCGGAT-C-CA----GATCCGGATT 288
Query 584 CAAAACCGACCCTTTCGACGGACTCTGTTTCGTCACCAAGAGTTTCCTTCAAGATCATGA 643
|||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 289 CAAAACAAACCCTTTCGACGGACTTTGTTTCGTCACCTAGAGTTTCCTTCAAGATAATGA 348
Query 644 AGGACACTGAATTTGCCGACATGAAAATTGACCCACCAGCGAGGATCACGAGTCCTCTGC 703
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AGGAGACTGAATTTGCCGACATGAAAATTGACCCACCAGCGAGGATCACGAGTCCTCTGC 408
Query 704 CTCAGATCGATGATGCTGCTTCGAAACCCTCTGATTTAGAAGGAGGGGATGACTTGCGAG 763
|||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 409 CTCAGATCGATGCTGCTGCATCGAAACCCTCTGATTTAGAAGGAGGAGATGACGTGCGAG 468
Query 764 ACAAGAAAGAAGTTGTTTTGGAGGAAGAAGATGAAGATGGTAGTGGTGGTGAGAGATTGA 823
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ACAAGGAAGAAGTTGTTTTGGAGGAAGAAGATGAAGATGGTAGTGGTGGTGAGAGATTGA 528
Query 824 ATCTGTGGAAGGCTGGTCTCAATGGGATTGGAGCAATCTGTTCTTTTGGGGTTGCAGCTG 883
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 529 ATCTGTGGAAGGCTGGTCTCAATGGGATTGGAGCAATCTGTTCTTTTGGGGTCGCAGCTG 588
Query 884 CTGCTGCTACCGTATGTGTCTTCTTCCTCGGACACAACAATATCAAAATCTGTAAGAACA 943
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CTGCTGCTACTGTATGTGTCTTCTTCCTCGGACACAACAATATCAAAATCTGTAAGAACA 648
Query 944 AGAACCAGATGCTTCGGTTCCAGATTTACTCCGATGATAATAAGAGGATGAAAGAAGTTG 1003
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGAACCAGATGCTTAGGTTCCAGATTTACTCCGATGATAATAAGAGGATGAAAGAAGTTG 708
Query 1004 TGAATCATGCAACAAAGCTCAATGAAGCAATCTTTGGTATGAAAGGTGTTCCTGTCGTAA 1063
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 709 TGAATCATGCAACAAAGCTCAATGAAGCAAACTTTGGTATGAAAAGTGTTCCTGTCGTAA 768
Query 1064 GAGCTCAAATATCTTTTGGGGGTCACTACGATGGACTTTGAATCTCAGCCATCATAATAG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 GAGCTCAAATATCTTTTGGGGGTCACTACGATGGACTTTGAATCTCAGCCGTCATAATAG 828
Query 1124 TTC 1126
|||
Sbjct 829 TTC 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49902898353
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5