BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03950.3 Length=1771 Score E Sequences producing significant alignments: (Bits) Value Ahg477648 jgi|Araly1|477648|fgenesh2_kg.3__349__AT3G03950.3 2479 0.0 > Ahg477648 jgi|Araly1|477648|fgenesh2_kg.3__349__AT3G03950.3 Length=1678 Score = 2479 bits (1342), Expect = 0.0 Identities = 1590/1704 (93%), Gaps = 40/1704 (2%) Strand=Plus/Plus Query 49 AAAGATCACCGCCTTACGTTAAAGGGGAAGGAAGACGAAGAAAACAAAAAAGAACGGAAC 108 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 1 AAAGATCACCGCCTTACGTTAAA---G-AGGAAGACGAAGAAAACAAAAAAGAACGGAAC 56 Query 109 TTTCTAAAACCCCCCACACACCAAAAGCGctctctctctctGGGTTTTTCGAGGTTGCGT 168 ||||||||| | | |||| | ||||||||||||||||||||||||||||||| Sbjct 57 TTTCTAAAA-----C-C-CACC---A---CTCTCTCTCTCTGGGTTTTTCGAGGTTGCGT 103 Query 169 TTGCTTTCATCTGCCCAACCTTC-TAG-GGTTTTCCT--TCTCTTAAAGCTTATCCCttt 224 |||||||| | ||||||| |||| || ||||| || | |||||||||||||| || Sbjct 104 TTGCTTTCGTTTGCCCAA-CTTCACAGACGTTTT-CTAGGGT-TTAAAGCTTATCCC-TT 159 Query 225 tttttGCCTTCTCTCGATATGGCTGGAGCCGCTTCTTCTGATCGTCTCGTCACTAGCTTC 284 ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 160 TTTTTGCCTTCTCTCGACATGTCTGGAGCCGCTTCTTCTGATCGTCTCGCCACTAGCTTC 219 Query 285 CCTCTTCTGGATACAGCAGATTTGTTTCAGGACTTGTCTTTAGGTTCAGATGCAAATGAA 344 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 220 CCTCTTCTGGAGACAGCAGATTTGTTTCAGGAGTTGTCTTTAGGTTCAGATGCAAATGAA 279 Query 345 GTTCCTATGAACTTTACTAAGGGTTCTTTTCAGCATCCGTATGGTCATGCACCTTATGGT 404 ||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 280 GTTCCTAGGAACCGTAATAAGGGTTCTTTTCAGCATCAGTATGGTCATGCACCTTATGGC 339 Query 405 GCATCTTCTCATGGAAGTGAAAGAAGGCCAAACATGAATGCTGGCAATCTGCTAAATGGT 464 ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| Sbjct 340 GCATCTTCTCATGGAAGTGAACGAAGGCCAAATATGAATGTTGGCAATCTGCTAAATGGT 399 Query 465 GGAGACTCGATTGGTTCATACCCGTGGGGTTACATCCCAGCAAACTATCCTTCTGGTGGC 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 GGAGACTCGATTGGTTCATACCCGTGGGGTTACATCCCAGCAAACTATCCTTCTGGTGGC 459 Query 525 TACCCTGATCCGAGGTTTGGTTATGACCGCAACAGCAATCACAGTTCCTTTTCACATCTC 584 ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 460 TACCCGGATCCGATGTTTGGTTATGACCGCAACAGCAATCACAATTCCTTTTCACATCTC 519 Query 585 ATGAATCCACACAGCTCACAAGAAGTACCAAGTTTTGACCAATTGGGATATAATGATCAT 644 ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 520 ATGAATCCACACAGCTCACAAGAAGCACTGAGTTTTGACCAATTTGGATATAATGATCAT 579 Query 645 TTGTATTCCAACCATGGATTGTATGGACTTTACGGGAATGTAATTGACTCTGGTCATGCA 704 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 580 TTGTATTCCAACCATGGATTGTACGGACTTTACGGGAATGTAATTGACTCTGGTCATGCA 639 Query 705 TATGGAACTTTTGGTTATGATTCCTGGAAACTTGGGCGAGGATGGTATCCCGTTGATGGT 764 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 640 TATGGAACTTTTGGCTATGATTCCTGGAAACTTGGGCGAGGATGGTATCCTGTTGATGGT 699 Query 765 TATAGAAAGACCAGAAGCTTCAATCATGGGCGTGGTTACAGTGATGAGAAAGCAGATAGG 824 |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 700 TATAGAAAGACCAGAAGCTTCAATCAAGGGCGTGGGTATAGTGATGAGAAAGCAGATAGG 759 Query 825 CTTAATGAGCTATGTCGAGGACCAAGGAGTAGTGATTTCAAGAATCCACAAGTTCTTAAC 884 ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 760 CTTAATGAGCTTTGTCGAGGACCAAGGAGTAGTGATTTCAAGAGTCCACAAGTTCTTAAC 819 Query 885 TCTTCAATGCTAGATGCAATGAAGCAAGACGTTTCAGCAGTAGATCTCCAGCGCTACAAT 944 |||||||||||||| |||||||||||||| |||||||| | |||||| ||||| ||||| Sbjct 820 TCTTCAATGCTAGAGGCAATGAAGCAAGATGTTTCAGCGGCAGATCTTCAGCGTTACAAC 879 Query 945 GGGGAGAATTTCCCTGAATCATTTGTGAAAGCAAAATTCTTTGTGATCAAGTCATACAGC 1004 |||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||||| Sbjct 880 GGGGAGAATTTCCCTGAAACATTCGTGAAAGCTAAATTCTTTGTGATCAAGTCTTACAGT 939 Query 1005 GAAGATGATGTTCATAACTGTATTAAGTATGGTGCATGGTCGAGCACACCAACTGGCAAC 1064 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 940 GAAGATGATGTTCATAACAGTATTAAGTATGGTGCATGGTCGAGCACACCAACTGGCAAC 999 Query 1065 AAGAAGTTGAATGCTGCATATTATGAAGCCAAAGAAAACT-CCCAAGAATGCCCTGTGTA 1123 ||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1000 AAGAAGTTGCATGCTGCATATTATGAAGCCAAAGAAAA-TGCCCAAGAATGCCCTGTGTA 1058 Query 1124 TCTTCTGTTCTCGGTGAATGCAAGTGGGCAATTTGTTGGTCTTGCGGAGATGGTAGGCCC 1183 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1059 TCTTCTGTTCTCGGTGAATGCAAGTGGGCAATTTGTCGGTCTTGCAGAGATGGTAGGCCC 1118 Query 1184 TGTTGATTTCAACAAGACAATGGAGTATTGGCAGCAAGATAAATGGATTGGTTGTTTCCC 1243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 TGTTGATTTCAACAAGACAATGGAGTATTGGCAGCAAGATAAATGGATTGGTTGTTTCCC 1178 Query 1244 TGTGAAGTGGCATATCATCAAAGACATACCAAACAGTCTCTTAAGACACATTACCCTGGC 1303 |||||||||||||||||||||||||||||||||||||||||| |||||||| || || || Sbjct 1179 TGTGAAGTGGCATATCATCAAAGACATACCAAACAGTCTCTTGAGACACATAACACTTGC 1238 Query 1304 GAATAACGAGAACAAGCCTGTCACTAATAGCAGAGACACTCAAGAGGTGAATCTGGAGCA 1363 |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1239 GAATAATGAGAACAAGCCAGTCACTAATAGCAGAGACACTCAAGAGGTTAATCTGGAGCA 1298 Query 1364 TGGGACCAAGATCATAAAGATCTTCAAGGAGTATATGAGCAAGACATGTATACTTGATGA 1423 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1299 TGGGACTAAGATCATAAAGATCTTCAAGGAGTATATGAGCAAGACATGTATACTTGATGA 1358 Query 1424 TTACAAGTTCTATGAGACAAGGCAGAAGATCATCAGAGACAAGAAGATCAAGCAAAAGAA 1483 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1359 TTACAAGTTCTATGAGACAAGGCAAAAGATCATCAGAGATAAGAAGATCAAGCAAAAGAA 1418 Query 1484 ACAGGCCCTTGATGGAGCTTCGGGGGAAACAATTAACTTGAGTTGAAAGATGGAATCAAT 1543 ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| || Sbjct 1419 ACAGGCCCTTGATGGAGCTTCCGGGGAAACAATTAACTTGTGTTGAAAGCTGGAATCGAT 1478 Query 1544 GCAAGGAAAGAAGAAGATGACTTAATTAAAAGAACTTAGTTTT-GAATTATGTTTTTTCT 1602 |||||||||||||| |||||||||||||||||||||||||| | || ||||||| || Sbjct 1479 GCAAGGAAAGAAGA---TGACTTAATTAAAAGAACTTAGTTTTTGGATCATGTTTTCCCT 1535 Query 1603 TCAGGGTTGGGATTTCTAAAAACCTAATACACA--TCTTTAATCTGTGTGTT-T-TCT-C 1657 |||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||| | Sbjct 1536 TCAGGGTTTGGATTTCTAAAAACCTAATACACACATCTTTAATCTGTGTGTTCTCTCTGC 1595 Query 1658 TGCT--T-ATCTAAACAAAACTTACATTGTCTTTTGTTCCTCTTAAGGGGACGCACATCT 1714 |||| | |||||||||||||| |||||||||||||||||| ||||||| |||||||||| Sbjct 1596 TGCTGCTTATCTAAACAAAACTGACATTGTCTTTTGTTCCTTTTAAGGG-ACGCACATCT 1654 Query 1715 GATAAAACAAAAACTCAGGCTTTC 1738 ||||||| ||||||||| |||||| Sbjct 1655 GATAAAATAAAAACTCATGCTTTC 1678 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66467477525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5