BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03990.1 Length=1139 Score E Sequences producing significant alignments: (Bits) Value Ahg477656 jgi|Araly1|477656|fgenesh2_kg.3__357__AT3G03990.1 1389 0.0 > Ahg477656 jgi|Araly1|477656|fgenesh2_kg.3__357__AT3G03990.1 Length=1096 Score = 1389 bits (752), Expect = 0.0 Identities = 796/818 (97%), Gaps = 0/818 (0%) Strand=Plus/Plus Query 17 aaaaaTGAGTCAACACAACATCTTAGAAGCTCTAAATGTCCGGGTCGTGGGTACGGGTGA 76 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 AAAAATGAGTCAACACAACATCTTAGATGCTCTAAATGTCCGGGTCGTGGGTACGGGTGA 60 Query 77 TCGGATCCTGTTTTTGGCCCATGGATTCGGTACTGACCAATCAGCTTGGCACTTGATCCT 136 ||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 TCGGATCCTGTTTCTAGCCCATGGATTCGGTACTGACCAATCAGCTTGGCACTTAATCCT 120 Query 137 TCCTTACTTCACTCAAAACTACAGAGTCGTCCTCTATGACCTAGTTTGCGCCGGCAGTGT 196 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCTTACTTCACCCAAAACTACAGAGTCGTCCTCTATGACCTAGTTTGCGCCGGCAGTGT 180 Query 197 CAACCCCGATTACTTCGATTTCAATCGTTACACAACTCTCGATCCTTACGTCGATGATCT 256 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAATCCCGATTACTTCGATTTCAATCGTTACACAACTCTCGATCCTTACGTCGATGATCT 240 Query 257 TCTCAACATCGTTGATTCACTCGGAATCCAAAACTGTGCTTACGTTGGTCACTCTGTTTC 316 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCTCGACATCGTCGATTCACTCGGAATCCAAAACTGTGCTTACGTTGGTCACTCTGTTTC 300 Query 317 CGCTATGATCGGAATCATCGCTTCGATTCGTCGGCCGGAGCTTTTCTCCAAGCTTATCTT 376 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 301 CGCTATGATCGGAATCATCGCTTCGATTCGTCGGCCGGAGCTTTTCTCGAAGCTTATCTT 360 Query 377 GATCGGATTTTCGCCTAGGTTTCTCAACGACGAGGATTATCATGGAGGATTCGAAGAAGG 436 |||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 361 GATCGGATTTTCACCTAGGTTTCTCAACGACGAGGATTACCACGGAGGATTCGAAGAAGG 420 Query 437 TGAGATTGAGAAAGTTTTCTCAGCTATGGAAGCTAATTACGAAGCTTGGGTTCATGGATT 496 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TGAGATCGAGAAGGTTTTCTCAGCTATGGAAGCTAATTACGAAGCTTGGGTTCATGGATT 480 Query 497 TGCTCCGCTTGCTGTTGGAGCTGATGTTCCGGCGGCGGTTAGAGAATTTAGCCGGACTTT 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGCTCCGCTTGCTGTTGGAGCTGATGTTCCGGCGGCGGTTAGAGAATTTAGCCGGACTTT 540 Query 557 GTTTAATATGCGTCCGGATATATCTCTGTTTGTTTCGAGGACGGTTTTCAACAGCGATCT 616 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 541 GTTTAATATGCGTCCGGATATTTCTCTGTTTGTTTCGAGGACGGTTTTCAACAGCGATCT 600 Query 617 GAGAGGTGTGCTTGGGTTAGTTAGAGTTCCGACGTGTGTGATTCAGACGGCGAAGGATGT 676 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 601 GAGAGGTGTGCTCGGGTTAGTTAGAGCTCCGACGTGTGTGATTCAGACGGCGAAGGATGT 660 Query 677 TTCTGTGCCGGCTTCGGTGGCGGAGTATCTTAGGTCTCATCTCGGTGGAGATACTACTGT 736 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TTCGGTGCCGGCTTCGGTGGCGGAGTATCTTAGGTCTCATCTCGGTGGAGATACTACTGT 720 Query 737 GGAGACTCTTAAAACTGAAGGACATTTGCCGCAGCTTAGTGCTCCGGCGCAGCTTGCTCA 796 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 721 GGAGACGCTTAAAACTGAAGGACATTTGCCGCATCTTAGTGCTCCGGCGCAGCTTGCTCA 780 Query 797 GTTTCTCCGGCGAGCTCTTCCTCGGTGACttttttttA 834 |||||||||||||||||||||||||||||| ||||||| Sbjct 781 GTTTCTCCGGCGAGCTCTTCCTCGGTGACTCTTTTTTA 818 Score = 313 bits (169), Expect = 2e-84 Identities = 254/290 (88%), Gaps = 25/290 (9%) Strand=Plus/Plus Query 862 TAATTGGTGGAATATGGGTTTAGTGGGGTCCACGTATCGAAGAAAAGAAGGGCCTCTATT 921 ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 817 TAATTGGAGGAATATGGGATTAGTGGGGTCCACGTAGCGAAGAAAAGAAGGGCCTCTATT 876 Query 922 TGTGGAGGACAGTTTGGCATTGTCACAAATCTAGTAA---GATAAGATTGTTCACTTGAC 978 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 877 TGTGGAGTACAGTTTGGCATTGTCACAAATCTAGTAATAAGATAAGATTGTTCACATGAC 936 Query 979 ACGTGACTTTCGCTTTT-T-TATCACtt-tt---tttCT-T-GCTCTCTTCATTAGTTTA 1030 |||||||| |||| ||| | |||||||| || ||||| | |||||||| ||||||||| Sbjct 937 ACGTGACTATCGCATTTATATATCACTTCTTCACTTTCTCTTGCTCTCTTGATTAGTTTA 996 Query 1031 -T-AATCACAAGTTTATTTCATAA-AATAATTGG-AGAATAACCaaaaaaaacattaaaa 1086 | |||||||||||||||| | || ||||||||| |||||||| ||| || |||||||| Sbjct 997 ATTAATCACAAGTTTATTTTA-AAGAATAATTGGCAGAATAAC-AAACAA--CATTAAAA 1052 Query 1087 aaTCCTATCTTATCTTTTACTTTCCTCTGAATATTTCTATCCATATTGTT 1136 | || | | |||||||||||||||||||||||||| |||||||||||| Sbjct 1053 A-TC-T-T---ATCTTTTACTTTCCTCTGAATATTTCCATCCATATTGTT 1096 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42468929538 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5