BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04010.1 Length=1733 Score E Sequences producing significant alignments: (Bits) Value Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323 2362 0.0 > Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323 Length=1482 Score = 2362 bits (1279), Expect = 0.0 Identities = 1417/1485 (95%), Gaps = 4/1485 (0%) Strand=Plus/Plus Query 220 atgaattatcga-cgaaaaCAGAGTGCTATAACTAACTCTGCCGTTGTCTTTATCATCAT 278 |||||| ||||| || ||||||||||| ||||||||||| ||| ||||||||||||||| Sbjct 1 ATGAATCATCGACCG-AAACAGAGTGCCATAACTAACTCCACCGGTGTCTTTATCATCAT 59 Query 279 CTCCGCCGTATGTTTTCTCTCCGGCGGTGTCTCTGGTTTGGGAGTAAACTGGGGAACAAT 338 || |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 60 CTACGCCTTATTTTTTCTCTCCGGCGGGGTCTCTGGTTTGGGAGTAAACTGGGGAACAAT 119 Query 339 GGCGAGTCATCAGTTACCGCCGAAGACGGTGGTGGAGATGCTTAAAGACAACAATATACA 398 ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 120 GGCGACTCATCAGTTACCACCGAAGACGGTGGTGGAAATGCTTAAAGACAACAATATACA 179 Query 399 GAAAGTGAAGTTGTTCGATGCCGACACAAACACCATGGGAGCTCTCGCCGGCTCCGGCGT 458 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 180 GAAAGTGAAGTTGTTCGATGCCGACACAAACACGATGGGAGCTCTCGCCGGCTCCGGCGT 239 Query 459 CGAAGTGATGGTGGCTATCCCTAATGATCTGCTCCTAGCGATGGGAAACTATCAAAGAGC 518 ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 240 CGAAGTGATGGTGGCGATCCCTAATGATCTGCTCCAAGCCATGGGAAACTATCAAAGAGC 299 Query 519 TAAAGATTGGGTCCAAAGAAACGTCTCTAGATTCAACTTTAACAACGGCGTTAAGATCAA 578 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 300 TAAAGATTGGGTCCAAAGAAACGTCTCTAGATTCAACTTTAATAACGGCGTTAAGATCAA 359 Query 579 ATACGTTGCAGTGGGGAACGAACCGTTCTTGACAGCGTACAACGGATCATTCATAAACCT 638 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 360 ATATGTTGCAGTGGGGAACGAGCCGTTCTTGACAGCGTACAACGGATCATTCATAAACCT 419 Query 639 AACGTACCCAGCACTCTTCAACATCCAAACCGCTTTAAACGAGGCTGGAGTTGGTGATTT 698 ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 420 AACTTATCCAGCACTCTTCAACATCCAAACCGCTTTAAACGAAGCTGGAGTTGGTGATTT 479 Query 699 TACCAAAGCCACCGTTCCTTTAAACGCCGACGTTTACAATTCTCCTCCGGACAATCAAGT 758 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 480 CACCAAAGCCACCGTTCCTTTAAACGCCGACGTTTACAATTCTCCTCCGGACAACCAAGT 539 Query 759 CCCATCCGCCGGAAGATTCCGTTCCGACATTATCCAAGAAATGACACAAATCGTTAACTT 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CCCATCCGCCGGAAGATTCCGTTCCGACATTATCCAAGAAATGACACAAATCGTTAACTT 599 Query 819 CCTCGCACAGAACAAAGCTCCTTTCACAGTCAACATTTATCCTTTCCTCAGTCTCTACTT 878 ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 600 CCTCGCACAGAACAAAGCTCCCTTCACCGTCAACATTTACCCTTTCCTCAGTCTCTACTT 659 Query 879 AAGCAGCGACTTTCCTTTCGAATACGCTTTCTTTGACGGCCAAAACACCGTTAACGATAA 938 |||||| |||||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct 660 AAGCAGTGACTTTCCTTTCGATTACGCTTTCTTTGACGGCCAAAACACCGTTAATGACAA 719 Query 939 CGGCGTTATCTACACGAACGTCTTCGACGCTAGTTTCGACACGCTTTTAGCTTCTTTAAA 998 ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 720 CGGCGTTGTCTACACAAACGTCTTCGACGCTAATTTCGACACGCTTTTAGCTTCTTTAAA 779 Query 999 CGCGTTGAATCACGGTAACATGGAAGTGATTGTTGGAGAAGTTGGTTGGCCTACGGATGG 1058 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 780 CGCGTTGAATCACGGTAACATGGAAGTGATCGTTGGAGAAGTTGGTTGGCCTACGGATGG 839 Query 1059 TGACAAGAACGCAAACGTTCCAAACGCGGAACGGTTTTATTCCGGTTTGCTTCCGCGGTT 1118 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGACAAGAACGCAAACGTTCAAAACGCGGAACGGTTTTATTCCGGTTTGCTTCCGCGGTT 899 Query 1119 GGCGAACAACGTTGGAACTCCTATGCGTAAAGGTTACATTGAGGTTTATCTTTTCGGATT 1178 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GGCGAACAACGTAGGAACTCCTATGCGTAAAGGTTACATTGAGGTTTATCTTTTCGGATT 959 Query 1179 TATCGATGAAGATGCGAAAAGTGTAGCGCCAGGGAACTTCGAACGTCATTGGGGGATATT 1238 |||||||||||||| |||||| || || || ||||| ||||||||||||||||||||||| Sbjct 960 TATCGATGAAGATGTGAAAAGCGTTGCCCCGGGGAATTTCGAACGTCATTGGGGGATATT 1019 Query 1239 TAAATTTGATGGCCAACCGAAATTCCCGGTAGATTTTCGTGGACAAGGTCAGAAAAAGTT 1298 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1020 CAAATTTGATGGCCAACCGAAATTCCCGGTAGATTTTCGGGGGCAAGGTCAGAAAAAGTT 1079 Query 1299 CTTAACGGGAGCTCAAAACGTTCAGTACTTTCTGAACCAGTGGTGTATGTTTAATCCTAA 1358 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1080 CTTAACCGGAGCTCAAAACGTTCAGTACTTGCTGAACCAGTGGTGTATGTTTAATCCTAA 1139 Query 1359 TGGTCGTGGTAATATGAGTAGGCTCGGAGATAATATAAACTACGCGTGTTCGCATTCGGA 1418 ||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct 1140 TGGCCGTGGTAATATGAGTAGCCTTGGAGATAACATAAACTACGCGTGTTCGCATTCGGA 1199 Query 1419 CTGTACCGCTTTAGGTTATGGATCATCTTGTGGCAATCTTGATGCGAATGGAAACGCATC 1478 |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1200 CTGTACTGCTTTAGGTTACGGATCCTCTTGTGGCAATCTTGATGCGAATGGAAACGCATC 1259 Query 1479 TTACGCGTTTAATATGTATTTCCAAGTGCAAAATCAGGAAGCTCAGGCGTGCGATTTTGA 1538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 TTACGCGTTTAATATGTATTTCCAAGTGCAAAATCAGGAAGCTCAGGCGTGCGATTTTGA 1319 Query 1539 AGGGCTTGCAACGATTACTACTCAAAATATATCTCAAGGACAATGTAATTTTCCAATTCA 1598 |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 1320 AGGGCTTGCAACGATTACTACTCAAAATATTTCTCAAGGACAATGTAATTTCCCGATTCA 1379 Query 1599 GATTGGAGAGCCATCTTCTGGTCATTATGATTATAGCTATGGTTCGATGGTTAGGTTGTG 1658 ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1380 GATTGGAGAGCCATCGGCTGGTCATTATGATTATAGCTATGGTTCGATGGCTAGGTTGTG 1439 Query 1659 TTTGGTGATGAGTGGCTTGGTCTTTCTTCTCATATAGAACAATGA 1703 ||||||||||||||| ||||| |||||||||||| | ||||||| Sbjct 1440 TTTGGTGATGAGTGGTTTGGTGTTTCTTCTCATA--GCACAATGA 1482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65020048215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5