BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04030.3 Length=1346 Score E Sequences producing significant alignments: (Bits) Value Ahg903224 jgi|Araly1|903224|Al_scaffold_0003_352 1934 0.0 Ahg488696 jgi|Araly1|488696|fgenesh2_kg.6__1830__AT5G18240.4 994 0.0 > Ahg903224 jgi|Araly1|903224|Al_scaffold_0003_352 Length=1185 Score = 1934 bits (1047), Expect = 0.0 Identities = 1140/1186 (96%), Gaps = 2/1186 (0%) Strand=Plus/Plus Query 124 ATGTATTACCAAAACCAGCACCAAGGAAAGAACATCCTCTCATCTTCAAGAATGCATATA 183 ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| Sbjct 1 ATGTATTACCAAAACCAGCACCAAGGAAAGAACGTCCTCTCTTCTTCGAGAATGCATATA 60 Query 184 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTCCAGGTGATTCTGGACTTATCCTA 243 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 61 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTCCAGGAGATTCTGGACTCATCCTT 120 Query 244 TCAACCGATGCAAAGCCACGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATTGAA 303 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 TCAACCGATGCAAAGCCGCGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATCGAA 180 Query 304 GCAGTCAATCAACTCGGTGGAGCAGATAAAGCTACTCCTAAGACAATCATGAAAGTCATG 363 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 GCGGTCAATCAACTCGGTGGAGCAGATAAAGCTACCCCTAAGACAATCATGAAAGTCATG 240 Query 364 GGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGCTGAGC 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 241 GGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGTTGAGC 300 Query 424 AAGAATCTCAACGGACAAGCTAACAACAGCTTCAACAAAATAGGTATAATGACCATGATG 483 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || Sbjct 301 AAGAATCTCAACGGACAAGCTAACAGCAGCTTCAACAAAATAGGTATGATGACCATGTTG 360 Query 484 GAAGAAAAGACTCCTGATGCAGACGAAATTCAAAGCGAGAATTTAAGCATTGGACCACAG 543 |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 361 GAAGAACAGACTCCTGATGCAGACGAAAGTCAAAGCGAGAGTTTAAGCATTGGACCACAG 420 Query 544 CCAAACAAGAATTCACCAATAGGTGAAGCACTGCAAATGCAAATAGAGGTCCAAAGAAGG 603 || |||||||| || |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 CCTAACAAGAACTCGCCAATAGGTGAAGCACTGCAGATGCAAATAGAGGTCCAAAGAAGG 480 Query 604 CTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTTAGGATAGAGGCTCAAGGGAAG 663 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 CTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGGAAG 540 Query 664 TACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTCGGTGCA 723 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 541 TACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAAACAGAACCTCGGTGCA 600 Query 724 GCTGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAACTAGTATCTAAAGTATCAGCAGAG 783 || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 601 GCAGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAATTAGTATCTAAAGTATCAGCAGAA 660 Query 784 TACCCAAACTCTAGTTTCCTAGAACCAAAAGAACTTCAAAACCTATGCTCACAACAGATG 843 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TACCCAAACTCTAGTATCCTAGAACCAAAAGAACTTCAAAACCTATGCTCACAACAGATG 720 Query 844 CAAACAAACTATCCACCTGATTGCTCTCTTGAAAGTTGCCTGACCTCAAGCGAGGGAACG 903 ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 721 CAAACAACCTATCCACCAGATTGCTCTCTAGAAAGTTGCCTGACCTCAAGCGAGGGAACA 780 Query 904 CAGAAAAA-CTCGAAAATGCTAGAGAACAACAGATTAGGACTAAGAACGTATATTGGTGA 962 |||||||| || |||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 781 CAGAAAAACCT-GAAAATGCTAGAGAACAACAGATTAGGACTAAGAACATATCTTGGTGA 839 Query 963 TTCAACATCGGAGCAGAAAGAGATTATGGAAGAACCATTGTTCCAAAGAATGGAGCTCAC 1022 ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 840 TTCAACATCCGAGCAGAAAGAGATTATGGAAGAACAATTGTTCCAAAGAAGGGAGCTCAC 899 Query 1023 ATGGACAGAAGGTCTAAGAGGGAATCCATATCTTTCAACAATGGTGAGTGAAGCAGAACA 1082 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 900 ATGGACAGAAGGTCTAAGAGGGAATCCATATCTTTCAGCAATGGTGAGTGAAGCAGAACA 959 Query 1083 AAGAATCTCATATTCAGAAAGAAGTCCAGGTAGATTATCAATAGGAGTAGGATTGCACGG 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 AAGAATCTCATATTCAGAAAGAAGTCCAGGTAGATTATCAATAGGAGTAGGATTGCACGG 1019 Query 1143 ACACAAAAGCCAACATCAACAAGGCAACAATGAGGATCATAAGCTTGAAACACGAAACCG 1202 ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||| Sbjct 1020 ACACAAAAGTCAACATCAACAAGGCAACAATGAGGACCATAAGTTTGAAACACGAAGCCG 1079 Query 1203 GAAAGGCATGGATTCAACAACAGAGCTAGATCTCAACACACATGTTGAAAACTATTGTAC 1262 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1080 GAAAGGCATGGATTCAACAACAGAGCTAGATCTCAACACACATGTTGAAAACTTTTGTAC 1139 Query 1263 AACGCGTACGAAACAGTTCGACTTGAATGGTTTCAGCTGGAACTGA 1308 || ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1140 AAAGCGTACGAAACAGTTTGACTTGAATGGTTTCAGCTGGAACTGA 1185 > Ahg488696 jgi|Araly1|488696|fgenesh2_kg.6__1830__AT5G18240.4 Length=1587 Score = 994 bits (538), Expect = 0.0 Identities = 1018/1241 (82%), Gaps = 67/1241 (5%) Strand=Plus/Plus Query 116 CAGACTTTATGTATTACCAAAACCAGCACCAAGGAAAGAACATCCTCTCATCTTCAAGAA 175 ||||| ||||||||||||||||||||||||||||||||| ||||||||| || || |||| Sbjct 122 CAGAC-TTATGTATTACCAAAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAA 180 Query 176 TG--CATATAACTTCTGAAAGGCATCCATTCCTTAGAGGG-AATAGTC-CAGGTGATTCT 231 || ||| | | |||||||||| |||| ||||| || ||| ||| | | |||| |||||| Sbjct 181 TGCCCAT-TCA-TTCTGAAAGGAATCCGTTCCTCAG-GGGAAAT-GGCACAGGAGATTCT 236 Query 232 GGACTTATCCTATCAACCGATGCAAAGCCACGCCTAAAATGGACTCCAGATCTTCATGAG 291 ||||| ||||| ||||| |||||||||||| | ||||||||||||||||||||||| ||| Sbjct 237 GGACTCATCCTCTCAACTGATGCAAAGCCAAGACTAAAATGGACTCCAGATCTTCACGAG 296 Query 292 AGATTCATTGAAGCAGTCAATCAACTCGGTGGAGCAGATAAAGCTACTCCTAAGACAATC 351 ||||| ||||||| |||||||| || || |||| |||||| |||||||||||||||||| Sbjct 297 AGATTTGTTGAAGCGGTCAATCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAATC 356 Query 352 ATGAAAGTCATGGGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAA 411 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 357 ATGAAAGTCATGGGTATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAAA 416 Query 412 TACAGGCTGAGCAAGAATCTCAACGGACAAGCTAACAACAGCTTCAACAAAATAGGTATA 471 || ||||| ||||||||||| || ||||||||||||| ||| || ||||| | | || | Sbjct 417 TATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGTG 476 Query 472 ATGACCATGATGGAAGAAAAGACTCCTGATGCAGACGAAATTCAAAGCGAGAATTTAAGC 531 ||||||||| | |||||||| ||||||| | |||||||| ||| || |||| ||||||| Sbjct 477 ATGACCATGGTAGAAGAAAACCCTCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAGC 536 Query 532 ATTGGACCACAGCCAAACAAGAA-TTCACCAATAGGTGAAGCACTGCAAATGCAAATAGA 590 |||||||||||||| | || ||| || || ||| |||| || || |||||||||||||| Sbjct 537 ATTGGACCACAGCCGACCATGAACTT-GCCCATAAGTGATGCCCTTCAAATGCAAATAGA 595 Query 591 GGTCCAAAGAAGGCTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTTAGGATAGA 650 ||| || |||||||| || |||||||||||||||||||||||||||||||| |||||||| Sbjct 596 GGTTCAGAGAAGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGA 655 Query 651 GGCTCAAGGGAAGTACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAGACA 710 ||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||| Sbjct 656 GGCTCAAGGAAAGTACTTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACA 715 Query 711 GAACCTCGGTGCAGCTGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAACTAGTATCTAA 770 |||||| |||||||||||||| ||||| | |||| ||||||||| ||| |||||||||| Sbjct 716 GAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAA 775 Query 771 AGTATCAGCAGAGTACCCAAACTCTAGTTTCCTAGAACCAAAAGAACTTCAAAACCTATG 830 |||||||||||| || ||| ||||||||||||||||||| |||||||| || || ||| | Sbjct 776 AGTATCAGCAGAATATCCAGACTCTAGTTTCCTAGAACCGAAAGAACTCCAGAATCTACG 835 Query 831 CTCA-CAACAGATGCAAACAAACTATCCACCTGATTGCTCTCTTGAAAGTTGCCTGACCT 889 | || ||||||||||||||| |||||||||| | | ||| || || |||||||| |||| Sbjct 836 C-CATCAACAGATGCAAACAGCCTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCT 894 Query 890 CAAGCGAGGGAA-CGCAGAAAAACTCGAAA-ATGCTAGAGAACAACAGATTAGGACTAAG 947 |||| || |||| | |||||| | | ||| ||||| || ||||||| | ||| |||| Sbjct 895 CAAGTGAAGGAAAC-CAGAAAGCCCC-AAAGATGCTTGA---CAACAGACTGGGATTAAG 949 Query 948 AACGTATATTGGTGATTCAACATCGGAGCAGAAAGAGATTATGGAAGAACCATTGTTCCA 1007 ||| ||||| || |||||||| || |||||||||||||| |||||||||||||| ||||| Sbjct 950 AACATATATCGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAACCATTCTTCCA 1009 Query 1008 AAGAATGGAGCTCACATGGACAGAAG--GT---C-TAAGAG-G-G-AA---T---CCATA 1052 ||||||||||||||||| |||||| | | | |||| | | || | ||||| Sbjct 1010 TCGAATGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAGTAACAATAGGCCATA 1069 Query 1053 TCTTTCAACAATGG-TGAGTGA-AGCAGAACAAAGAATCTCAT-ATTCA-GAAAGAAGTC 1108 |||||| ||||||| | | | | |||||| |||||||| | || || ||| |||| | Sbjct 1070 TCTTTCGACAATGGCTAACA-ACA-CAGAACCGAGAATCTCGTCAT-CAAGAA-GAAGCC 1125 Query 1109 CAGGTAGATTATCAATAGGAGTAGGATTGCACGGACACAAA--AGCCAACATCAACAAGG 1166 | || ||||| ||||||||||| ||||| || | ||||| | || | | | ||| Sbjct 1126 CTGGAAGATTGTCAATAGGAGTGGGATTACATGAACACAGAGGAGGGAG--T-AGCAA-- 1180 Query 1167 CAACAATGAGGAT-CATAAGCTTGAAACA-CGA-AACCG-GAA-AG-GCATGGATTCAA- 1219 ||||| |||| || || ||| || || ||| || | ||| | ||| | || || Sbjct 1181 CAACAGTGAGTATACAGAAGAAAGATTCAACGAGAATGGTGAAGATTGCAAGC-TTGAAA 1239 Query 1220 CA-ACA---GA---GCT--AGATCTCAACACACATGTTGAAAACTATTGTACAACGCGTA 1270 || ||| || ||| |||||| |||||||| | ||||||||| | ||||||||| Sbjct 1240 CACACACAAGAACAGCTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGTC 1299 Query 1271 CGAAACAGTTCGACTTGAATGGTTTCAGCTGGAACTGAGAA 1311 |||||||||| || |||||||||||||||||||| |||||| Sbjct 1300 CGAAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGAGAA 1340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50360373357 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5