BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04060.1
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477665 jgi|Araly1|477665|fgenesh2_kg.3__366__AT3G04060.1 2250 0.0
Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462 573 1e-162
Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815 174 1e-42
> Ahg477665 jgi|Araly1|477665|fgenesh2_kg.3__366__AT3G04060.1
Length=1488
Score = 2250 bits (1218), Expect = 0.0
Identities = 1376/1447 (95%), Gaps = 31/1447 (2%)
Strand=Plus/Plus
Query 1 ATACTTTTATTTTCATTTCCTTTAACTGCATAGTTCTTCCTCAAATTGCTCATACCTTTG 60
||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATATTTTTATTTTCATTTCCTTTAACTGCATAGTTCTTCCTCAAATTTCTAATACCTTTG 60
Query 61 CTTCTCTTTCTTTCTTTATTCAACCTCTTATTTCTTCTTCAGCACCAACGTGTATCTGCA 120
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 61 CTTCTCTTTCTTTCTTTCTTCAACCTCTTATTTCTTCTCCAGCGCCAACGTGTATCTGCA 120
Query 121 GTAAAC---ACATATCCATCGATCGATCTCCTCAAAAAGTTATTGTTTTCTTG------- 170
|||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 121 GTAAACAGTACATATCCATCGATCGATCTCCTCAAAAAGTTCTTGTTATCTTGAAATCCA 180
Query 171 --AAGGATT-TTTCTTGTTCTTGATCAAGC--ATACATATATATAGATGGTGGAAGAAGG 225
|||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ACAAGG-TTGTTTCTTGTTCTTGATCAAGCGTATACATATATATAGATGGTGGAAGAAGG 239
Query 226 CGGCGTAGTTGTGAATCAAGGAGGAGATCAGGAGGTGGTGGATTTGCCTCCGGGGTTTCG 285
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CGGCGTAGTTGTGAATCAAGGAGGAGATCAGGAGGTGGTGGATTTGCCTCCAGGGTTTCG 299
Query 286 GTTTCACCCTACTGATGAAGAGATAATAACTCACTACCTCAAAGAGAAGGTCTTCAACAT 345
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTTCACCCAACTGATGAAGAGATAATAACTCACTACCTCAAAGAGAAGGTCTTCAACAT 359
Query 346 CCGATTTACCGCGGCAGCGATTGGTCAAGCCGACCTCAACAAGAACGAGCCATGGGATCT 405
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCGATTCACCGCGGCAGCGATTGGTCAAGCCGACCTCAACAAGAACGAGCCATGGGATCT 419
Query 406 ACCAAAGATTGCAAAGATGGGGGAGAAGGAGTTTTACTTTTTCTGCCAGAGGGATCGGAA 465
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCAAAAATTGCAAAGATGGGAGAGAAGGAGTTTTACTTTTTCTGCCAGAGGGATCGGAA 479
Query 466 GTATCCGACCGGGATGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACCGG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GTATCCGACCGGGATGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACTGG 539
Query 526 GAAGGACAAGGAGATCTTTAGAGGCAAAGGTTGTCTTGTTGGGATGAAGAAAACACTTGT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAAGGACAAGGAGATCTTTAGAGGCAAAGGTTGTCTTGTTGGGATGAAGAAAACACTTGT 599
Query 586 TTTCTATACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCG 645
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTCTATAGAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCG 659
Query 646 TCTTGATGGAAAATATTCTTATCATAACCTCCCCAAAACCGCAAGGGATGAATGGGTGGT 705
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTTGATGGCAAATATTCTTATCATAACCTCCCCAAAACCGCAAGGGATGAATGGGTGGT 719
Query 706 GTGTAGGGTTTTTCACAAGAACGCTCCTAGTACTACAATCACTACTACAAAACAACTCTC 765
|||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||
Sbjct 720 GTGTAGGGTTTTTCACAAGAGCGATCCTAGTACTACAATCACTCCTACAAGCCAACTCTC 779
Query 766 AAGGATTGATTCTCTTGATAACATTGATCATCTCTTAGACTTCTCATCTCTCCCTCCTCT 825
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 AAGGATTGATTCACTTGATAACATTGATCATCTCTTAGACTTCTCGTCTCTCCCTCCTCT 839
Query 826 CATAGATCCGGGTTTCTTGGGTCAACCCGGCCCAAGCTTCTCCGGTGCCCGTCAACAACA 885
||||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||
Sbjct 840 CATAGATCCGGGTTTCTTGGGTCAATCCAGCCCAAGCTTCTCCGGTGTCCGCCAACAACA 899
Query 886 CGATCTCAAACCTGTTCTCCACCATCCTACAACCGCACCAGTCGACAACACTTACCTTC- 944
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 CGACCTCAAACCTGTCCTCCACCATCCTACAACCGCACCAGTCGACAACACTTACC-TCT 958
Query 945 CTACCCAAGCTCTCAATTTCCCTTACCACTCGGTCCATAATTCCGGATCTGATTTCGGCT 1004
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 CTACCCAAACTTTCAATTTCCCTTACCACTCGGTCCATAATTCCGGATCTGATTTCGGTT 1018
Query 1005 ACGGGGCAGGTTCAGGCAATAATAACAAAGGTATGATCAAGTTGGAGCATTCTCTTGTGA 1064
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1019 ACGGGGCAGGTTCAGGCAATAATGACAAAGGTATGATTAAGTTGGAGCATTCTCTTGTGA 1078
Query 1065 GTGTGTCTCAAGAAACCGGTTTGAGTTCCGATGTGAACACAACCGCAACGCCAGAGATAT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTGTGTCTCAAGAAACCGGTTTGAGTTCCGATGTGAACACAACCGCAACGCCAGAGATAT 1138
Query 1125 CTTCTTATCCAATGATGATGAATCCGGCA---A-TG--------ATGGATGGTAGCAAGT 1172
||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 1139 CTTCTTATCCAATGATGATGAATCCGGCAGCCAATGCGGCGGTGATGGATGGTAGCAAGT 1198
Query 1173 CAGCGTGTGATGGTCTTGATGACTTGATCTTCTGGGAAGATTTATATACTAGCTAAATTT 1232
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAGCGTGTGATGATCTTGATGACTTGATCTTCTGGGAAGATTTATATACTAGCTAAATTT 1258
Query 1233 GGGAAAAGGTTATTTGTTAATTGTGATTGAAGAGTGGCATATTGATTACTCGTCTAGTGT 1292
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1259 GGGAAAAGGTTATTTGTTAATTGTGATTGAAGAGTGGCATATTGATTACTTGTCTAGTGT 1318
Query 1293 TTTTAATCGTGTAATTAGTTCGTATATAATATACATGTACATAAGATCATTAGGTTTATT 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTTTAATCGTGTAATTAGTTCGTATATAATATACATGTACATAAGATCATTAGGTTTATT 1378
Query 1353 AGGC-ATTGGACTTTAGTTCGGTGATTGCTTACCTAGTTTTTAGCTTGAGAAAAAAGGCT 1411
|||| ||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 1379 AGGCCATTGGACTTCAGTTCGATGATTGTTTACTTAGTTTTTAGCTTGAGAAAAAAGGCT 1438
Query 1412 GTCATTG 1418
|||||||
Sbjct 1439 GTCATTG 1445
> Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462
Length=1005
Score = 573 bits (310), Expect = 1e-162
Identities = 550/662 (83%), Gaps = 31/662 (5%)
Strand=Plus/Plus
Query 213 TGGTGGAAGAAGGCG-GCGTAGTTGTGAATCAAGGAGGAGATCAGGAGGTGGTGGATTTG 271
|||| |||||||||| | || | | ||||||| ||||| || | ||| | |||||||||
Sbjct 11 TGGTCGAAGAAGGCGTG-GT-G-T-TGAATCATGGAGGTGA--A-GAGCTTGTGGATTTG 63
Query 272 CCTCCGGGGTTTC-GGTTTCACCCTACTGATGAAGAGATAATAAC-TCACTACCTCAAAG 329
|| || |||||| ||||||| || || || |||||||| ||||| | | ||||| || |
Sbjct 64 CCACC-TGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACAT-ATTACCTTAAGG 121
Query 330 AGAAGGTCTTCAACATCCGATTTACCGCGGCAGCGATTGGTCAAGCCGACCTCAACAAGA 389
||||||| || |||| |||||| || |||| || || || |||| || |||||||||
Sbjct 122 AGAAGGTTTTAAACAGCCGATTCACGGCGGTGGCCATGGGAGAAGCTGATCTCAACAAGT 181
Query 390 ACGAGCCATGGGATCTACCAAAGATTGCAAAGATGGGGGAGAAGGAGTTTTACTTTTTCT 449
||||| |||||| | ||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 182 GTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTTTACTTCTTCT 241
Query 450 GCCAGAGGGATC-GGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACCGTGTCTGGT 508
| || ||||| | ||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 242 GTCAAAGGGA-CAGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACAGAGTCCGGA 300
Query 509 TATTGGAAGGCGACCGGGAAGGACAAGGAGATCTTTAGAGGCAAAGGTTGTCTTGTTGGG 568
|||||||| |||||||||||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct 301 TATTGGAAAGCGACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 360
Query 569 ATGAAGAAAACACTTGT-TTTCTATACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTG 627
||||||||||||||||| ||| |||| |||||||||||| |||||||||||||| |||||
Sbjct 361 ATGAAGAAAACACTTGTGTTT-TATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTG 419
Query 628 GGTTATGCATGAATATCGTCTTGATGGAAAATATTCTTATCATAACCTCCCCAAAACCGC 687
||| |||||||||||||||||||| || |||||||| ||||| || ||||||||| | ||
Sbjct 420 GGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATCACAATCTCCCCAAATCTGC 479
Query 688 AAGGGATGAATGGGTGGTGTGTAGGGTTTTTCACAAGAACGCTCCTAGTACTACAATC-A 746
|||||| |||||||| |||||||||||||||||||||||| |||| |||||||| | |
Sbjct 480 AAGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACTACAACCCA 539
Query 747 -CTACT-AC-A-AA-AC--A---AC--TCTCA--AGGATTGATTCTCTTGATAACATTGA 792
| | | || | || || | | ||||| ||||| |||||||| || ||||||||
Sbjct 540 ACCATTGACGAGAATACCCATTGAAGATCTCACGAGGATGGATTCTCTAGAGAACATTGA 599
Query 793 TCATCTCTTAGACTTCTCATCTCTCCCTCCTCTCATAGATCCGGGTTTCTTGGGTCAACC 852
||||||| ||||||| |||||||| ||||| ||||||||||| ||||| |||||||| |
Sbjct 600 TCATCTCCTAGACTTTTCATCTCTTCCTCCCCTCATAGATCCAAGTTTCATGGGTCAAAC 659
Query 853 CG 854
||
Sbjct 660 CG 661
> Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815
Length=1110
Score = 174 bits (94), Expect = 1e-42
Identities = 247/319 (77%), Gaps = 18/319 (6%)
Strand=Plus/Plus
Query 419 AAGATGGGGGAGAAGGAGTTTTACTT-TTTCTGCCAGAGGGATCGGAAGTATCCGACCGG 477
|||||||| ||||| || | ||||| ||| ||| | || ||||| ||||| || ||
Sbjct 199 AAGATGGGAGAGAAAGAATGGTACTTCTTT-AGCCTCCGTGACCGGAAATATCCAACGGG 257
Query 478 GATGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACCGGGAAGGACAAG-G 536
| |||| || ||| | || || | | ||||||| ||||| || ||||| || ||| || |
Sbjct 258 GCTGAGAACAAACAGAGCAACTGAGGCTGGTTACTGGAAAGCTACCGGAAAAGAC-AGAG 316
Query 537 AGATCTTTAGAGGCAAAG-GTTGT---CTTGTTGGGATGAAGAAAACACTTGT-TTTCTA 591
|||||||||| | ||| |||| ||||||||||||||||| || ||||| ||| ||
Sbjct 317 AGATCTTTAG-TTCCAAGACTTGTGCACTTGTTGGGATGAAGAAGACTCTTGTCTTT-TA 374
Query 592 TACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCGTCTTGA 651
| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 375 CAAAGGAAGAGCTCCTAAAGGAGAGAAGAGTAATTGGGTTATGCATGAATATCGTCTTGA 434
Query 652 TGGAAAATAT-TCTTATCATAACCTCCCCAA-AACCGC-AAGGGATGAATGGGTGGTGTG 708
|| |||| | ||||| ||| | || | || || | | |||| ||||||||||| | |
Sbjct 435 AGGCAAAT-TCTCTTACCATTTCATCTC-AAGAAGCTCCAAGG-ATGAATGGGTGATCTC 491
Query 709 TAGGGTTTTTCACAAGAAC 727
||||||||| || || |||
Sbjct 492 TAGGGTTTTCCAGAA-AAC 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55649847945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5