BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04070.1 Length=1254 Score E Sequences producing significant alignments: (Bits) Value Ahg477666 jgi|Araly1|477666|fgenesh2_kg.3__367__AT3G04070.1 2004 0.0 Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1 156 4e-37 Ahg918785 jgi|Araly1|918785|scaffold_100066.1 63.9 3e-09 > Ahg477666 jgi|Araly1|477666|fgenesh2_kg.3__367__AT3G04070.1 Length=1259 Score = 2004 bits (1085), Expect = 0.0 Identities = 1203/1260 (95%), Gaps = 7/1260 (1%) Strand=Plus/Plus Query 1 AAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCATAGCTCTTCACCAAAACCAAT 60 |||||||||||||||||||||||||||||||||||||| | | || |||||||||||||| Sbjct 1 AAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCTTTGTTCATCACCAAAACCAAT 60 Query 61 ATTTTCTCCTTTGTTGTTCTTTCTTTTCTATCAAAACTTTCTACTTAAAATATCATTCCT 120 ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 61 ATTTTCTCCTTCGTTGTTCTTTCTTTCCTATCAAAACTTTATACTTAAAATATCATTCCA 120 Query 121 TTAAACAATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCC 180 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 AGAAA-AATGATAAGCAAGGATCCAAGATCGAGTTTACCACCAGGGTTTCGATTTCATCC 179 Query 181 AACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 AACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCGGTCCC 239 Query 241 GCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAA 299 Query 301 GGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAA 360 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 300 GGCTCCATTTGGAGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGAAAATATCCTAA 359 Query 361 CGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 360 CGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACTGACAA 419 Query 421 ATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATaaaaaaaGCTCT 480 ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ATTAATTGCGGTAGCGAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCT 479 Query 481 TGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATA 539 Query 541 TCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGA 600 |||||||||||| || ||||||||||||||||| | || ||||||||||||| ||||| | Sbjct 540 TCGTCTTGCCGACTCTTTATCTCCCAAAAGAATCAGCTGTTCTAGGAGCGGTAGTAGCCA 599 Query 601 AGTTAATAATAATTTTGGAGATAGGAA--T----TCTAAAGAATATTCGATGAGACTGGA 654 ||| ||||||||| ||||||||||||| | |||||||||||||||||||| ||||| Sbjct 600 AGTCAATAATAATCTTGGAGATAGGAATTTGAAATCTAAAGAATATTCGATGAGGCTGGA 659 Query 655 TGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGT 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGT 719 Query 715 TGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCG 779 Query 775 CGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTG 834 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 780 CGGAACCTTTTTGCCAAATTTGCAAAACGATCAACCCCTTAAACGTCAGAAGTCTTCTTG 839 Query 835 TTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGA 894 ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 840 TTCATTCTCAAACTTATTAGACGCTACAGATTTGACGTTCCTCGCAAATTTTCTAAACGA 899 Query 895 AACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCC 954 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 900 AACCCCGGAAAATCGTTCTGAATCGGATTTTTCTTTCATGAGTGGCAATTTCTCTAATCC 959 Query 955 TGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTC 1014 |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 960 TGACATCTACGGAAACCATTACTTGGATCAGAAGTTACCACAGTTGAGCTCTCCTACTTC 1019 Query 1015 AGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAA 1074 ||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||| Sbjct 1020 AGAGACAAGCGGCGTCGGAAACAAAAGAGAGAGACTAGATTTTGCGGAAGAAACGATAAA 1079 Query 1075 CGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCA 1134 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1080 CGCTTCGAAGAAGATGATGAACACCTATAGTTACAATAATAGTATAGATCAAATGGATCA 1139 Query 1135 TAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCA 1194 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1140 TAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCTTGATGAGTTCTCACCTTCA 1199 Query 1195 ATATCAAGGCTAGAGAGAATATTAATTTGAAAACCTAATCACGAATTAGGGATCATTCGG 1254 |||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| Sbjct 1200 GTATCAAGGCTAGAGAGAATATTTATTTGAAAACCTAATGACGAATTGGGGATCATTCGG 1259 > Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1 Length=1558 Score = 156 bits (84), Expect = 4e-37 Identities = 210/270 (78%), Gaps = 12/270 (4%) Strand=Plus/Plus Query 158 CCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCT-AAGGAA 216 |||||||| || || ||||| ||||| |||||||| || | | |||||||| || | Sbjct 178 CCTCCAGGCTTCCGGTTTCACCCAACCGATGAAGAGCTTGTGGTTCATTACCTCAA--AC 235 Query 217 G-AAAGTTTCCTCTTCCCCAGT-CCCGCTTTCGATTATCGCCGATGTCGATATCTACAAA 274 | |||| ||||| | || | || | | | || |||||||| |||||| |||| ||| Sbjct 236 GCAAAGCCGCCTCTGCTCCTTTACCTG-TAGCCATCATCGCCGAAGTCGATCTCTATAAA 294 Query 275 TCCGATCCATGGG-ATTTACCAGCTAAGGC-TCCATTTGGGGAGA-AAGAGTGGTATTTT 331 | ||||||||||| | || || ||||| || | | ||||| || | |||| ||||| || Sbjct 295 TTCGATCCATGGGAACTT-CCCGCTAAAGCGT-CGTTTGGAGA-ACAAGAATGGTACTTC 351 Query 332 TTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCT 391 |||||||| | ||| |||| ||||||||||||||||||||||||||||| || | || Sbjct 352 TTCAGTCCTCGAGATCGGAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCAACTTCA 411 Query 392 GGATATTGGAAAGCAACCGGAACAGATAAA 421 |||||||||||||| ||||| ||||||||| Sbjct 412 GGATATTGGAAAGCGACCGGTACAGATAAA 441 > Ahg918785 jgi|Araly1|918785|scaffold_100066.1 Length=938 Score = 63.9 bits (34), Expect = 3e-09 Identities = 47/53 (89%), Gaps = 2/53 (4%) Strand=Plus/Plus Query 633 AAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAA 685 ||||||| || | || |||||||||||||||||||||||||||||||| ||| Sbjct 454 AAGAATAGTC--TCAGGCTGGATGATTGGGTTCTTTGCCGGATTTACAACAAA 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46853064993 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5